Rh1DG023500

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005210
Physical Location & Seq
Forward (+)
3684596 .. 3691284
6689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG023500.1

Sequence Viewer

Length: 417 bp
ATGGCCTCCTCCCCCGACCACAACCACACCCTGAACGGCGATTCCAACACCCACGCCTCCAAAAAGCCCAAACTCTCCTTCATCACCCCCTCCGAAATCGCCGCCGAATTCTCCCACCATGACCCCACCGTCGCCCGAATCAACAACGGCAGCTTCGGGTCCTGCCCCGACTCCGTCCTCCAGGCCCAGCGCCGCTGGCAGCTCAAGTACCTCTCCCAACCTGATCACTTCTACTTCAACCACCTCCAAGCCGGCATCCTCCACTCCCGCACCCTCATTAAGGACCTCATCAACGCCGACCACGTCAACGAGGTCTCCATCGTCGACAACGCCACCACGGCCGCCGCCATCGTCCTCCAGCAGGCCGCCTGGGGCTTCTCGGAAAGCAATGAGTCCAGTGACAAACCGAGATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

138

Amino Acids

15.26

Weight (kDa)

6.27

Isoelectric Point (pI)

44.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
AccI GTMKAC 1 cut(s) 324
AciI CCGC 6 cut(s) 102, 193, 268, 342, 345, 366
AcoI YGGCCR 1 cut(s) 339
AcsI RAATTY 1 cut(s) 107
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 280, 361
AgsI TTSAA 1 cut(s) 238
AjiI CACGTC 1 cut(s) 304
AjnI CCWGG 2 cut(s) 180, 368
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AloI GAACNNNNNNTCC 2 cut(s) 26, 58
AluBI AGCT 2 cut(s) 153, 202
AluI AGCT 2 cut(s) 153, 202
Alw26I GTCTC 1 cut(s) 319
AoxI GGCC 4 cut(s) 3, 183, 339, 363
ApeKI GCWGC 2 cut(s) 150, 199
ApoI RAATTY 1 cut(s) 107
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 3 cut(s) 159, 184, 283
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 2 cut(s) 159, 283
BbvI GCAGC 2 cut(s) 162, 211
BccI CCATC 2 cut(s) 326, 356
BceAI ACGGC 3 cut(s) 52, 163, 354
BciT130I CCWGG 2 cut(s) 182, 370
BclI TGATCA 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 1 cut(s) 415
BfoI RGCGCY 1 cut(s) 193
BglI GCCNNNNNGGC 1 cut(s) 338
BisI GCNGC 7 cut(s) 102, 151, 193, 200, 342, 345, 366
BlsI GCNGC 7 cut(s) 103, 152, 194, 201, 343, 346, 367
Bme1390I CCNGG 2 cut(s) 182, 370
Bme18I GGWCC 2 cut(s) 159, 283
BmgBI CACGTC 1 cut(s) 304
BmgT120I GGNCC 3 cut(s) 159, 184, 283
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 2 cut(s) 182, 370
BmsI GCATC 1 cut(s) 264
BpmI CTGGAG 2 cut(s) 164, 341
BpuEI CTTGAG 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 2 cut(s) 336, 369
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 361
Bse118I RCCGGY 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 396
Bse3DI GCAATG 1 cut(s) 394
BseBI CCWGG 2 cut(s) 182, 370
BseDI CCNNGG 2 cut(s) 336, 369
BseGI GGATG 1 cut(s) 255
BseLI CCNNNNNNNGG 2 cut(s) 280, 361
BseMI GCAATG 1 cut(s) 394
BseNI ACTGG 1 cut(s) 396
BseX3I CGGCCG 1 cut(s) 339
BseXI GCAGC 2 cut(s) 162, 211
BseYI CCCAGC 1 cut(s) 186
Bsh1285I CGRYCG 1 cut(s) 342
BshFI GGCC 4 cut(s) 5, 185, 341, 365
BsiEI CGRYCG 1 cut(s) 342
BsiSI CCGG 1 cut(s) 252
BslI CCNNNNNNNGG 2 cut(s) 280, 361
BsmAI GTCTC 1 cut(s) 319
BsnI GGCC 4 cut(s) 5, 185, 341, 365
Bso31I GGTCTC 1 cut(s) 319
Bsp143I GATC 1 cut(s) 223
BspACI CCGC 6 cut(s) 102, 193, 268, 342, 345, 366
BspANI GGCC 4 cut(s) 5, 185, 341, 365
BspLI GGNNCC 1 cut(s) 160
BspTNI GGTCTC 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 394
BsrFI RCCGGY 1 cut(s) 251
BsrI ACTGG 1 cut(s) 396
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 2 cut(s) 336, 369
BssMI GATC 1 cut(s) 223
Bst2UI CCWGG 2 cut(s) 182, 370
Bst4CI ACNGT 1 cut(s) 130
BstC8I GCNNGC 3 cut(s) 197, 253, 363
BstDSI CCRYGG 1 cut(s) 336
BstENI CCTNNNNNAGG 2 cut(s) 278, 359
BstF5I GGATG 1 cut(s) 255
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 1 cut(s) 223
BstMCI CGRYCG 1 cut(s) 342
BstMWI GCNNNNNNNGC 2 cut(s) 196, 338
BstNI CCWGG 2 cut(s) 182, 370
BstSCI CCNGG 2 cut(s) 180, 368
BstV1I GCAGC 2 cut(s) 162, 211
BstZI CGGCCG 1 cut(s) 339
BsuRI GGCC 4 cut(s) 5, 185, 341, 365
BtgI CCRYGG 1 cut(s) 336
BtrI CACGTC 1 cut(s) 304
BtsCI GGATG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 403
Cac8I GCNNGC 3 cut(s) 197, 253, 363
CfoI GCGC 1 cut(s) 192
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 3 cut(s) 159, 184, 283
Csp6I GTAC 1 cut(s) 208
CviAII CATG 1 cut(s) 119
CviJI RGCY 9 cut(s) 5, 67, 153, 185, 202, 251, 341, 365, 375
CviKI_1 RGCY 9 cut(s) 5, 67, 153, 185, 202, 251, 341, 365, 375
CviQI GTAC 1 cut(s) 208
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
EaeI YGGCCR 1 cut(s) 339
EagI CGGCCG 1 cut(s) 339
EclXI CGGCCG 1 cut(s) 339
Eco31I GGTCTC 1 cut(s) 319
Eco47I GGWCC 2 cut(s) 159, 283
Eco52I CGGCCG 1 cut(s) 339
EcoNI CCTNNNNNAGG 2 cut(s) 278, 359
EcoO109I RGGNCCY 2 cut(s) 159, 283
EcoRI GAATTC 1 cut(s) 107
EcoRII CCWGG 2 cut(s) 180, 368
FaeI CATG 1 cut(s) 122
FaiI YATR 1 cut(s) 120
FatI CATG 1 cut(s) 118
FauI CCCGC 1 cut(s) 275
FbaI TGATCA 1 cut(s) 223
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 7 cut(s) 102, 151, 193, 200, 342, 345, 366
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 7 cut(s) 102, 151, 193, 200, 342, 345, 366
FspBI CTAG 1 cut(s) 415
GlaI GCGC 1 cut(s) 191
GluI GCNGC 7 cut(s) 102, 151, 193, 200, 342, 345, 366
GsaI CCCAGC 1 cut(s) 190
GsuI CTGGAG 2 cut(s) 164, 341
HaeII RGCGCY 1 cut(s) 193
HaeIII GGCC 4 cut(s) 5, 185, 341, 365
HapII CCGG 1 cut(s) 252
HhaI GCGC 1 cut(s) 192
Hin1II CATG 1 cut(s) 122
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HincII GTYRAC 2 cut(s) 307, 325
HindII GTYRAC 2 cut(s) 307, 325
HinfI GANTC 5 cut(s) 41, 138, 170, 392, 411
HpaII CCGG 1 cut(s) 252
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 2 cut(s) 307, 325
Hpy188I TCNGA 2 cut(s) 94, 382
Hpy8I GTNNAC 2 cut(s) 307, 325
Hpy99I CGWCG 2 cut(s) 134, 326
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 303
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 338
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 1 cut(s) 122
HspAI GCGC 1 cut(s) 190
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Ksp22I TGATCA 1 cut(s) 223
Kzo9I GATC 1 cut(s) 223
Lsp1109I GCAGC 2 cut(s) 162, 211
LweI GCATC 1 cut(s) 264
MaeI CTAG 1 cut(s) 415
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 1 cut(s) 398
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MluCI AATT 1 cut(s) 107
MlyI GAGTC 2 cut(s) 164, 401
MmeI TCCRAC 1 cut(s) 69
MroNI GCCGGC 1 cut(s) 251
MseI TTAA 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 2 cut(s) 182, 370
MvaI CCWGG 2 cut(s) 182, 370
MwoI GCNNNNNNNGC 2 cut(s) 196, 338
NaeI GCCGGC 1 cut(s) 253
NdeII GATC 1 cut(s) 223
NgoMIV GCCGGC 1 cut(s) 251
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 1 cut(s) 160
NmuCI GTSAC 1 cut(s) 398
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PdiI GCCGGC 1 cut(s) 253
PfeI GAWTC 3 cut(s) 41, 138, 411
PflFI GACNNNGTC 2 cut(s) 173, 302
PkrI GCNGC 7 cut(s) 103, 152, 194, 201, 343, 346, 367
PleI GAGTC 2 cut(s) 164, 400
PpsI GAGTC 2 cut(s) 164, 400
PpuMI RGGWCCY 2 cut(s) 159, 283
Psp5II RGGWCCY 2 cut(s) 159, 283
Psp6I CCWGG 2 cut(s) 180, 368
PspFI CCCAGC 1 cut(s) 186
PspGI CCWGG 2 cut(s) 180, 368
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 3 cut(s) 159, 184, 283
PspPPI RGGWCCY 2 cut(s) 159, 283
PsyI GACNNNGTC 2 cut(s) 173, 302
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SalI GTCGAC 1 cut(s) 323
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 7 cut(s) 102, 151, 193, 200, 342, 345, 366
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 3 cut(s) 159, 184, 283
SchI GAGTC 2 cut(s) 164, 401
ScrFI CCNGG 2 cut(s) 182, 370
SetI ASST 8 cut(s) 155, 204, 213, 223, 246, 288, 306, 315
SfaNI GCATC 1 cut(s) 264
SinI GGWCC 2 cut(s) 159, 283
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 1 cut(s) 107
SsiI CCGC 6 cut(s) 102, 193, 268, 342, 345, 366
SspMI CTAG 1 cut(s) 415
StyD4I CCNGG 2 cut(s) 180, 368
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 1 cut(s) 306
TaqI TCGA 1 cut(s) 324
TasI AATT 1 cut(s) 107
TauI GCSGC 5 cut(s) 104, 195, 344, 347, 368
TfiI GAWTC 3 cut(s) 41, 138, 411
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 1 cut(s) 398
TseI GCWGC 2 cut(s) 150, 199
Tsp45I GTSAC 1 cut(s) 398
TspDTI ATGAA 1 cut(s) 70
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 1 cut(s) 403
Tth111I GACNNNGTC 2 cut(s) 173, 302
VpaK11BI GGWCC 2 cut(s) 159, 283
XagI CCTNNNNNAGG 2 cut(s) 278, 359
XapI RAATTY 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 324
XspI CTAG 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.