Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005210

Physical Location & Seq

Genomic Coordinates Reverse (-)

44392537 .. 44414594

Gene Structure 22058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG336200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTGCTTGGGTTTTGACTGGGACACAACTGATATGAGTATTATGTTGCTTGCCAAGATTTCCGTGCCATTAATGGGGACTGCACGGATTGTTATAAATAGCCTCCACATCAAGGGAGATCTTCTCCTGATGCCAGTTTTGAATGGGAGAGCAATTTTGTACTCATTTCTGTCAGTTCCTGATGTGAGGATAGGAGTTGCGTTTGGTAGTGGTGGAAGCCAATCACTACCTGCTACAGAGCTTCCTTTTGTTTCTTCTTGGCTGGTGAAAATTCTTACTGACACCTTGTTTAAGACGATGGTTGAACCTCGCCGCTGTTATTACTCTATGCCAGCAGGAAGCCTAAGGAAAGAGGCTGTTGGAGGTATTATATATGTGACAGTCGTTTCAGCCAGTAAACTTTCTAGATCTGGCTTGAGATTAAGCCCATCCAGAAGGCAATTTGATAGTACTTCAGAAGAGAATTTTGTTGATAAAGATCTGCAGACATTTGTGGAGGTTGAGCTTGAACTTGCTCTGGAAAACCTCTGGAAAACCAACCCCTTTGTCTCCGTCTTCTTCTACTCCTCGGCGAGTGGCGACGGCTCGGTTGGCTCCTCGCCTCCTCTTCTCATCAATCATCATCTGGAGTTCTGCACTTCTGCTGTTCTGGGTGACTGGATTATGGATAGCCGCACTGCAATTTTTGGAGCTGTTTGTGAGCACCATGGTTCATTTTCTTTATGGGCGGAGGCGGCCAATGGGGCTCTGCCTTCTATTGTTTTGGTCCATGGGATTTTTGGCTTTGGCAAAGGGAGGCTGGGAGGTTCGTCATATTTCGCCGGAGCTGAGAAGAAAGACAAGAGGGTTCTGGTGCCGGATTTGGGATCTCTGACCAGCGTTGACGACAGGTCCCTATACTTGTTCTTGTTTCTGTTCTCCTTTTGGTGCCAACAGCAACTGCTGCTAGAACCCAAGATGGATCAGAGGACTGGGGCTATGTTGAAGTCCGACTCAAAGCACACATGTTCTGGTGGCTTTATAGAAGTCCTAACAGAGTTGAGGATCACTCAAAGCCATGGCCAATTATTCTCTGGCTCCAAGGTGGACTTGGAGGTTAGGGAGTTGGGATTGGGAACTTTGAAGAGGTTGGGCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0005096 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0007275 GO:0007399 GO:0008047 GO:0008150 GO:0009898 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0010720 GO:0010975 GO:0010976 GO:0016020 GO:0022008 GO:0022603 GO:0022604 GO:0023051 GO:0023057 GO:0030154 GO:0030234 GO:0030307 GO:0030695 GO:0031224 GO:0031226 GO:0031235 GO:0031344 GO:0031346 GO:0032501 GO:0032502 GO:0040008 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045595 GO:0045597 GO:0045664 GO:0045666 GO:0045927 GO:0046578 GO:0046580 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0048638 GO:0048639 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050767 GO:0050769 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0051056 GO:0051058 GO:0051094 GO:0051128 GO:0051130 GO:0051239 GO:0051240 GO:0051336 GO:0051345 GO:0051960 GO:0051962 GO:0060284 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0098552 GO:0098562 GO:0098772 GO:0120035 GO:1902531 GO:1902532 GO:1903859 GO:1903861 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

379

Amino Acids

41.49

Weight (kDa)

6.51

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005210)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390731 RchiOBHm_Chr5g0024111
rosa_multiflora	Rmu_sc0004031.1_g000007 Rmu_sc0013809.1_g000011 Rmu_sc0034927.1_g000001
rosa_rugosa	Rorug03G0108500 Rorug04G0346300 Rorug05G0081600 Rorug06G0311200 Rorug07G0213800
rosa_samantha	Rh1DG023500 Rh1DG057300 Rh2BG158100 Rh2BG387200 Rh2BG406800 Rh2BG533000 Rh2CG336200 Rh3BG347400 Rh3CG300700 Rh4CG141500 Rh4CG158300 Rh4DG375200 Rh5BG362200 Rh6CG135300 Rh6CG212500 Rh7CG199100 Rh7DG321700 Rh7DG335400 Rh7DG393400
rosa_wichuraiana	Rw4G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	95
Acc36I	ACCTGC	1 cut(s)	238
AccB1I	GGYRCC	2 cut(s)	853, 927
AciI	CCGC	4 cut(s)	313, 673, 728, 734
AclWI	GGATC	3 cut(s)	874, 969, 1052
AcoI	YGGCCR	2 cut(s)	735, 1060
AcsI	RAATTY	2 cut(s)	270, 463
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	2 cut(s)	161, 451
AfiI	CCNNNNNNNGG	3 cut(s)	74, 112, 863
AflIII	ACRYGT	1 cut(s)	1004
AgsI	TTSAA	5 cut(s)	142, 305, 509, 985, 1123
AhdI	GACNNNNNGTC	1 cut(s)	889
AluBI	AGCT	4 cut(s)	241, 505, 692, 827
AluI	AGCT	4 cut(s)	241, 505, 692, 827
Alw21I	GWGCWC	1 cut(s)	705
Alw26I	GTCTC	1 cut(s)	553
AlwI	GGATC	3 cut(s)	874, 969, 1052
AlwNI	CAGNNNCTG	2 cut(s)	179, 940
AoxI	GGCC	3 cut(s)	735, 1060, 1132
ApeKI	GCWGC	1 cut(s)	943
ApoI	RAATTY	2 cut(s)	270, 463
AseI	ATTAAT	1 cut(s)	71
AspS9I	GGNCC	3 cut(s)	766, 891, 1132
AsuHPI	GGTGA	2 cut(s)	277, 665
AvaII	GGWCC	2 cut(s)	766, 891
AxyI	CCTNAGG	1 cut(s)	344
BalI	TGGCCA	1 cut(s)	1062
BanI	GGYRCC	2 cut(s)	853, 927
BanII	GRGCYC	1 cut(s)	748
BbsI	GAAGAC	1 cut(s)	547
Bbv12I	GWGCWC	1 cut(s)	705
BbvI	GCAGC	1 cut(s)	930
BccI	CCATC	3 cut(s)	292, 436, 952
BceAI	ACGGC	1 cut(s)	598
BcoDI	GTCTC	1 cut(s)	553
BfaI	CTAG	2 cut(s)	405, 947
BfmI	CTRYAG	2 cut(s)	234, 482
BfuAI	ACCTGC	1 cut(s)	238
BglI	GCCNNNNNGGC	1 cut(s)	743
BglII	AGATCT	3 cut(s)	118, 407, 478
BisI	GCNGC	4 cut(s)	313, 673, 735, 944
BlsI	GCNGC	4 cut(s)	314, 674, 736, 945
BmcAI	AGTACT	1 cut(s)	451
Bme18I	GGWCC	2 cut(s)	766, 891
BmeRI	GACNNNNNGTC	1 cut(s)	889
BmgT120I	GGNCC	3 cut(s)	766, 891, 1132
BmiI	GGNNCC	5 cut(s)	595, 855, 893, 929, 1078
BmrI	ACTGGG	2 cut(s)	28, 981
BmsI	GCATC	1 cut(s)	120
BmuI	ACTGGG	2 cut(s)	28, 981
BpiI	GAAGAC	1 cut(s)	547
BplI	GAGNNNNNCTC	4 cut(s)	108, 140, 1033, 1065
BpmI	CTGGAG	1 cut(s)	647
BpuEI	CTTGAG	1 cut(s)	436
BsaBI	GATNNNNATC	1 cut(s)	477
BsaJI	CCNNGG	5 cut(s)	567, 706, 769, 1057, 1080
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 112, 863
Bse1I	ACTGG	5 cut(s)	23, 134, 393, 662, 976
Bse21I	CCTNAGG	1 cut(s)	344
Bse8I	GATNNNNATC	1 cut(s)	477
BseDI	CCNNGG	5 cut(s)	567, 706, 769, 1057, 1080
BseGI	GGATG	1 cut(s)	428
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	3 cut(s)	74, 112, 863
BseMII	CTCAG	1 cut(s)	819
BseNI	ACTGG	5 cut(s)	23, 134, 393, 662, 976
BseRI	GAGGAG	3 cut(s)	556, 586, 594
BseXI	GCAGC	1 cut(s)	930
BseYI	CCCAGC	1 cut(s)	799
BsgI	GTGCAG	2 cut(s)	66, 619
BshFI	GGCC	3 cut(s)	737, 1062, 1134
BshNI	GGYRCC	2 cut(s)	853, 927
BsiHKAI	GWGCWC	1 cut(s)	705
BsiSI	CCGG	2 cut(s)	822, 857
BslFI	GGGAC	3 cut(s)	35, 91, 877
BslI	CCNNNNNNNGG	3 cut(s)	74, 112, 863
BsmAI	GTCTC	1 cut(s)	553
BsmFI	GGGAC	3 cut(s)	35, 91, 877
BsnI	GGCC	3 cut(s)	737, 1062, 1134
Bsp1286I	GDGCHC	2 cut(s)	705, 748
Bsp143I	GATC	6 cut(s)	118, 407, 478, 866, 961, 1044
Bsp19I	CCATGG	3 cut(s)	706, 769, 1057
BspACI	CCGC	4 cut(s)	313, 673, 728, 734
BspANI	GGCC	3 cut(s)	737, 1062, 1134
BspCNI	CTCAG	1 cut(s)	820
BspLI	GGNNCC	5 cut(s)	595, 855, 893, 929, 1078
BspMAI	CTGCAG	1 cut(s)	486
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	3 cut(s)	874, 969, 1052
BspT107I	GGYRCC	2 cut(s)	853, 927
BsrI	ACTGG	5 cut(s)	23, 134, 393, 662, 976
BssECI	CCNNGG	5 cut(s)	567, 706, 769, 1057, 1080
BssMI	GATC	6 cut(s)	118, 407, 478, 866, 961, 1044
BssT1I	CCWWGG	4 cut(s)	706, 769, 1057, 1080
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	3 cut(s)	453, 612, 1118
BstAPI	GCANNNNNTGC	1 cut(s)	943
BstC8I	GCNNGC	2 cut(s)	51, 333
BstDEI	CTNAG	2 cut(s)	344, 828
BstDSI	CCRYGG	3 cut(s)	706, 769, 1057
BstF5I	GGATG	1 cut(s)	428
BstKTI	GATC	6 cut(s)	121, 410, 481, 869, 964, 1047
BstMAI	GTCTC	1 cut(s)	553
BstMBI	GATC	6 cut(s)	118, 407, 478, 866, 961, 1044
BstMWI	GCNNNNNNNGC	4 cut(s)	591, 734, 743, 943
BstNSI	RCATGY	1 cut(s)	1008
BstSFI	CTRYAG	2 cut(s)	234, 482
BstV1I	GCAGC	1 cut(s)	930
BstV2I	GAAGAC	1 cut(s)	547
BstX2I	RGATCY	4 cut(s)	118, 407, 478, 866
BstYI	RGATCY	4 cut(s)	118, 407, 478, 866
Bsu36I	CCTNAGG	1 cut(s)	344
BsuRI	GGCC	3 cut(s)	737, 1062, 1134
BtgI	CCRYGG	3 cut(s)	706, 769, 1057
BtsCI	GGATG	1 cut(s)	428
BtsI	GCAGTG	1 cut(s)	675
BtsIMutI	CAGTG	1 cut(s)	675
BveI	ACCTGC	1 cut(s)	238
Cac8I	GCNNGC	2 cut(s)	51, 333
CaiI	CAGNNNCTG	2 cut(s)	179, 940
Cfr13I	GGNCC	3 cut(s)	766, 891, 1132
Csp6I	GTAC	2 cut(s)	160, 450
CviAII	CATG	4 cut(s)	707, 770, 1005, 1058
CviQI	GTAC	2 cut(s)	160, 450
DdeI	CTNAG	2 cut(s)	344, 828
DpnI	GATC	6 cut(s)	120, 409, 480, 868, 963, 1046
DpnII	GATC	6 cut(s)	118, 407, 478, 866, 961, 1044
DriI	GACNNNNNGTC	1 cut(s)	889
EaeI	YGGCCR	2 cut(s)	735, 1060
Eam1104I	CTCTTC	3 cut(s)	453, 612, 1118
Eam1105I	GACNNNNNGTC	1 cut(s)	889
EarI	CTCTTC	3 cut(s)	453, 612, 1118
EciI	GGCGGA	1 cut(s)	743
Eco130I	CCWWGG	4 cut(s)	706, 769, 1057, 1080
Eco24I	GRGCYC	1 cut(s)	748
Eco47I	GGWCC	2 cut(s)	766, 891
Eco57I	CTGAAG	1 cut(s)	438
Eco81I	CCTNAGG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	891
EcoT14I	CCWWGG	4 cut(s)	706, 769, 1057, 1080
EcoT38I	GRGCYC	1 cut(s)	748
ErhI	CCWWGG	4 cut(s)	706, 769, 1057, 1080
FaeI	CATG	4 cut(s)	710, 773, 1008, 1061
FalI	AAGNNNNNCTT	2 cut(s)	1073, 1105
FaqI	GGGAC	3 cut(s)	35, 91, 877
FatI	CATG	4 cut(s)	706, 769, 1004, 1057
Fnu4HI	GCNGC	4 cut(s)	313, 673, 735, 944
FokI	GGATG	1 cut(s)	415
FriOI	GRGCYC	1 cut(s)	748
Fsp4HI	GCNGC	4 cut(s)	313, 673, 735, 944
FspBI	CTAG	2 cut(s)	405, 947
GluI	GCNGC	4 cut(s)	313, 673, 735, 944
GsaI	CCCAGC	1 cut(s)	803
GsuI	CTGGAG	1 cut(s)	647
HaeIII	GGCC	3 cut(s)	737, 1062, 1134
HapII	CCGG	2 cut(s)	822, 857
Hin1II	CATG	4 cut(s)	710, 773, 1008, 1061
HincII	GTYRAC	1 cut(s)	883
HindII	GTYRAC	1 cut(s)	883
HinfI	GANTC	1 cut(s)	992
HpaII	CCGG	2 cut(s)	822, 857
HphI	GGTGA	2 cut(s)	277, 665
Hpy166II	GTNNAC	3 cut(s)	398, 883, 1087
Hpy188I	TCNGA	4 cut(s)	457, 873, 966, 991
Hpy188III	TCNNGA	7 cut(s)	127, 179, 405, 432, 518, 529, 626
Hpy8I	GTNNAC	3 cut(s)	398, 883, 1087
Hpy99I	CGWCG	1 cut(s)	584
HpyAV	CCTTC	2 cut(s)	429, 762
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4V	TGCA	4 cut(s)	83, 484, 636, 680
HpyF10VI	GCNNNNNNNGC	4 cut(s)	591, 734, 743, 943
HpyF3I	CTNAG	2 cut(s)	344, 828
Hsp92II	CATG	4 cut(s)	710, 773, 1008, 1061
Kzo9I	GATC	6 cut(s)	118, 407, 478, 866, 961, 1044
LmnI	GCTCC	4 cut(s)	599, 689, 824, 1082
Lsp1109I	GCAGC	1 cut(s)	930
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	2 cut(s)	405, 947
MaeIII	GTNAC	2 cut(s)	376, 653
MalI	GATC	6 cut(s)	120, 409, 480, 868, 963, 1046
MboI	GATC	6 cut(s)	118, 407, 478, 866, 961, 1044
MboII	GAAGA	8 cut(s)	113, 246, 470, 547, 550, 599, 844, 1135
MflI	RGATCY	4 cut(s)	118, 407, 478, 866
MhlI	GDGCHC	2 cut(s)	705, 748
MlsI	TGGCCA	1 cut(s)	1062
MluCI	AATT	6 cut(s)	153, 270, 440, 463, 681, 1064
MluNI	TGGCCA	1 cut(s)	1062
MlyI	GAGTC	1 cut(s)	986
MmeI	TCCRAC	2 cut(s)	340, 1014
Mox20I	TGGCCA	1 cut(s)	1062
MscI	TGGCCA	1 cut(s)	1062
MseI	TTAA	3 cut(s)	71, 291, 422
Msp20I	TGGCCA	1 cut(s)	1062
MspA1I	CMGCKG	1 cut(s)	315
MspI	CCGG	2 cut(s)	822, 857
MwoI	GCNNNNNNNGC	4 cut(s)	591, 734, 743, 943
NcoI	CCATGG	3 cut(s)	706, 769, 1057
NdeII	GATC	6 cut(s)	118, 407, 478, 866, 961, 1044
NlaIII	CATG	4 cut(s)	710, 773, 1008, 1061
NlaIV	GGNNCC	5 cut(s)	595, 855, 893, 929, 1078
NmeAIII	GCCGAG	1 cut(s)	548
NmuCI	GTSAC	2 cut(s)	376, 653
NspI	RCATGY	1 cut(s)	1008
PciI	ACATGT	1 cut(s)	1004
PkrI	GCNGC	4 cut(s)	314, 674, 736, 945
PleI	GAGTC	1 cut(s)	986
PpsI	GAGTC	1 cut(s)	986
PpuMI	RGGWCCY	1 cut(s)	891
PscI	ACATGT	1 cut(s)	1004
PshBI	ATTAAT	1 cut(s)	71
PsiI	TTATAA	1 cut(s)	95
Psp5II	RGGWCCY	1 cut(s)	891
PspFI	CCCAGC	1 cut(s)	799
PspN4I	GGNNCC	5 cut(s)	595, 855, 893, 929, 1078
PspPI	GGNCC	3 cut(s)	766, 891, 1132
PspPPI	RGGWCCY	1 cut(s)	891
PstI	CTGCAG	1 cut(s)	486
PstNI	CAGNNNCTG	2 cut(s)	179, 940
PsuI	RGATCY	4 cut(s)	118, 407, 478, 866
RsaI	GTAC	2 cut(s)	161, 451
RsaNI	GTAC	2 cut(s)	160, 450
SaqAI	TTAA	3 cut(s)	71, 291, 422
SatI	GCNGC	4 cut(s)	313, 673, 735, 944
Sau3AI	GATC	6 cut(s)	118, 407, 478, 866, 961, 1044
Sau96I	GGNCC	3 cut(s)	766, 891, 1132
ScaI	AGTACT	1 cut(s)	451
SchI	GAGTC	1 cut(s)	986
SduI	GDGCHC	2 cut(s)	705, 748
SfaNI	GCATC	1 cut(s)	120
SfcI	CTRYAG	2 cut(s)	234, 482
SinI	GGWCC	2 cut(s)	766, 891
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
Sse9I	AATT	6 cut(s)	153, 270, 440, 463, 681, 1064
SsiI	CCGC	4 cut(s)	313, 673, 728, 734
SspMI	CTAG	2 cut(s)	405, 947
StyI	CCWWGG	4 cut(s)	706, 769, 1057, 1080
TaaI	ACNGT	1 cut(s)	382
TasI	AATT	6 cut(s)	153, 270, 440, 463, 681, 1064
TatI	WGTACW	2 cut(s)	159, 449
TauI	GCSGC	3 cut(s)	315, 675, 737
Tru1I	TTAA	3 cut(s)	71, 291, 422
Tru9I	TTAA	3 cut(s)	71, 291, 422
TscAI	CASTG	1 cut(s)	682
TseFI	GTSAC	2 cut(s)	376, 653
TseI	GCWGC	1 cut(s)	943
Tsp45I	GTSAC	2 cut(s)	376, 653
TspDTI	ATGAA	1 cut(s)	702
TspGWI	ACGGA	3 cut(s)	52, 100, 541
TspRI	CASTG	1 cut(s)	682
VpaK11BI	GGWCC	2 cut(s)	766, 891
VspI	ATTAAT	1 cut(s)	71
XapI	RAATTY	2 cut(s)	270, 463
XbaI	TCTAGA	1 cut(s)	404
XceI	RCATGY	1 cut(s)	1008
XcmI	CCANNNNNNNNNTGG	3 cut(s)	776, 1070, 1087
XspI	CTAG	2 cut(s)	405, 947
ZrmI	AGTACT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.