Rh2BG387200

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005210
Physical Location & Seq
Reverse (-)
55000485 .. 55002275
1791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG387200.1

Sequence Viewer

Length: 711 bp
ATGGCCTCCTCCCCCGACCACAACCACACCCTGAACGGCGATTCCAACACCCACGCCTCCAAAAAGCCCAAACTCTCCTTCATCACCCCCTCCGAAATCGCCGCCGAATTCTCCCACCACGACCCCACCGTCGCCCGAATCAACAACGGCAGCTTCGGGTCCTGCCCTGACTCCGTCCTCCAGGCCCAGCGCCGCTGGCAGCTCAAGTACCTCTCCCAGCCCAATCACTTCTACTTCAACCACCTCCAAGCCGGCATCATCCACTCCCGCACCCTCATCAACGCCGACCACGTCGACGAGGTCTCCATCGTCGACAACGCCACCACCGCCATCGTCCTCCAGCAGGCCGCCTTGGGCTTCTCCGAGAGCAAGTTCGAGCAGGGACGTAGAGTAGTAGTACCAAAAATGCCGCTTGGGGAAAGAGCAGGTGACAAAAGCGAGTCTCGCTACTGCGGCGTGGAGACGGAGTTCAGCGATGACATGCCCAACGTCCTCGCCTTCAATCTCACCCATGGCTCCTTCGACTTCGTCGTCGCTACTCTGTCTCCAAAATCGTGGTGGTTTATTCGCCATGATGGAGGAAGAAGAACCCATCTTCCTTTAAGGGATTTTTCCAGGCTTTTACGGAAGGTGGTGTTTGTCTTTGAAACTAAACACAAGTTTGTTTTTAGAGGGAATTTTGGTTCTGATGGAGATGAGAATAGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

236

Amino Acids

26.53

Weight (kDa)

7.25

Isoelectric Point (pI)

48.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 416
AasI GACNNNNNNGTC 2 cut(s) 128, 530
Acc36I ACCTGC 1 cut(s) 416
AccI GTMKAC 2 cut(s) 294, 312
AciI CCGC 7 cut(s) 102, 193, 268, 327, 348, 410, 453
AcsI RAATTY 2 cut(s) 107, 676
AfaI GTAC 2 cut(s) 209, 399
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 3 cut(s) 238, 502, 647
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 2 cut(s) 180, 614
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AloI GAACNNNNNNTCC 8 cut(s) 26, 58, 452, 484, 580, 612, 667, 699
AluBI AGCT 2 cut(s) 153, 202
AluI AGCT 2 cut(s) 153, 202
Alw26I GTCTC 4 cut(s) 307, 447, 455, 549
AoxI GGCC 3 cut(s) 3, 183, 345
ApeKI GCWGC 2 cut(s) 150, 199
ApoI RAATTY 2 cut(s) 107, 676
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 2 cut(s) 159, 184
AsuHPI GGTGA 3 cut(s) 76, 440, 499
AvaII GGWCC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 162, 211
BccI CCATC 5 cut(s) 314, 338, 569, 600, 683
BceAI ACGGC 2 cut(s) 52, 163
BciT130I CCWGG 2 cut(s) 182, 616
BcoDI GTCTC 4 cut(s) 307, 447, 455, 549
BfoI RGCGCY 1 cut(s) 193
BfuAI ACCTGC 1 cut(s) 416
BisI GCNGC 7 cut(s) 102, 151, 193, 200, 348, 410, 454
BlsI GCNGC 7 cut(s) 103, 152, 194, 201, 349, 411, 455
Bme1390I CCNGG 2 cut(s) 182, 616
Bme18I GGWCC 1 cut(s) 159
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 2 cut(s) 159, 184
BmiI GGNNCC 2 cut(s) 160, 517
BmrFI CCNGG 2 cut(s) 182, 616
BmsI GCATC 1 cut(s) 264
BpmI CTGGAG 2 cut(s) 164, 323
BpuEI CTTGAG 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 307
BsaJI CCNNGG 2 cut(s) 351, 511
BsaXI ACNNNNNCTCC 6 cut(s) 287, 317, 452, 482, 529, 559
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse118I RCCGGY 1 cut(s) 251
BseBI CCWGG 2 cut(s) 182, 616
BseDI CCNNGG 2 cut(s) 351, 511
BseGI GGATG 1 cut(s) 258
BseLI CCNNNNNNNGG 1 cut(s) 343
BseXI GCAGC 2 cut(s) 162, 211
BseYI CCCAGC 2 cut(s) 186, 216
BshFI GGCC 3 cut(s) 5, 185, 347
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 396
BslI CCNNNNNNNGG 1 cut(s) 343
BsmAI GTCTC 4 cut(s) 307, 447, 455, 549
BsmBI CGTCTC 1 cut(s) 455
BsmFI GGGAC 1 cut(s) 396
BsnI GGCC 3 cut(s) 5, 185, 347
Bso31I GGTCTC 1 cut(s) 307
Bsp19I CCATGG 1 cut(s) 511
BspACI CCGC 7 cut(s) 102, 193, 268, 327, 348, 410, 453
BspANI GGCC 3 cut(s) 5, 185, 347
BspLI GGNNCC 2 cut(s) 160, 517
BspMI ACCTGC 1 cut(s) 416
BspTNI GGTCTC 1 cut(s) 307
BsrFI RCCGGY 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 2 cut(s) 351, 511
BssT1I CCWWGG 2 cut(s) 351, 511
Bst2UI CCWGG 2 cut(s) 182, 616
Bst4CI ACNGT 1 cut(s) 130
BstC8I GCNNGC 3 cut(s) 197, 253, 345
BstDSI CCRYGG 1 cut(s) 511
BstENI CCTNNNNNAGG 1 cut(s) 341
BstF5I GGATG 1 cut(s) 258
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 1 cut(s) 192
BstMAI GTCTC 4 cut(s) 307, 447, 455, 549
BstMWI GCNNNNNNNGC 4 cut(s) 196, 326, 444, 453
BstNI CCWGG 2 cut(s) 182, 616
BstNSI RCATGY 1 cut(s) 484
BstSCI CCNGG 2 cut(s) 180, 614
BstV1I GCAGC 2 cut(s) 162, 211
BstXI CCANNNNNNTGG 1 cut(s) 555
BsuRI GGCC 3 cut(s) 5, 185, 347
BtgI CCRYGG 1 cut(s) 511
BtgZI GCGATG 1 cut(s) 489
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 1 cut(s) 258
BveI ACCTGC 1 cut(s) 416
Cac8I GCNNGC 3 cut(s) 197, 253, 345
CfoI GCGC 1 cut(s) 192
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 2 cut(s) 159, 184
Csp6I GTAC 2 cut(s) 208, 398
CviAII CATG 3 cut(s) 481, 512, 572
CviQI GTAC 2 cut(s) 208, 398
DrdI GACNNNNNNGTC 2 cut(s) 128, 530
DseDI GACNNNNNNGTC 2 cut(s) 128, 530
Eco130I CCWWGG 2 cut(s) 351, 511
Eco31I GGTCTC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 159
EcoNI CCTNNNNNAGG 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 159
EcoRI GAATTC 1 cut(s) 107
EcoRII CCWGG 2 cut(s) 180, 614
EcoT14I CCWWGG 2 cut(s) 351, 511
ErhI CCWWGG 2 cut(s) 351, 511
Esp3I CGTCTC 1 cut(s) 455
FaeI CATG 3 cut(s) 484, 515, 575
FaiI YATR 3 cut(s) 482, 513, 573
FaqI GGGAC 1 cut(s) 396
FatI CATG 3 cut(s) 480, 511, 571
FauI CCCGC 1 cut(s) 275
FblI GTMKAC 2 cut(s) 294, 312
Fnu4HI GCNGC 7 cut(s) 102, 151, 193, 200, 348, 410, 454
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 7 cut(s) 102, 151, 193, 200, 348, 410, 454
GlaI GCGC 1 cut(s) 191
GluI GCNGC 7 cut(s) 102, 151, 193, 200, 348, 410, 454
GsaI CCCAGC 2 cut(s) 190, 220
GsuI CTGGAG 2 cut(s) 164, 323
HaeII RGCGCY 1 cut(s) 193
HaeIII GGCC 3 cut(s) 5, 185, 347
HapII CCGG 1 cut(s) 252
HhaI GCGC 1 cut(s) 192
Hin1II CATG 3 cut(s) 484, 515, 575
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HincII GTYRAC 2 cut(s) 295, 313
HindII GTYRAC 2 cut(s) 295, 313
HinfI GANTC 4 cut(s) 41, 138, 170, 440
HpaII CCGG 1 cut(s) 252
HphI GGTGA 3 cut(s) 76, 440, 499
Hpy166II GTNNAC 2 cut(s) 295, 313
Hpy188I TCNGA 3 cut(s) 94, 364, 688
Hpy8I GTNNAC 2 cut(s) 295, 313
Hpy99I CGWCG 6 cut(s) 134, 296, 299, 314, 533, 536
HpyAV CCTTC 4 cut(s) 88, 508, 529, 622
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 3 cut(s) 291, 385, 489
HpyF10VI GCNNNNNNNGC 4 cut(s) 196, 326, 444, 453
HpySE526I ACGT 3 cut(s) 291, 385, 489
Hsp92II CATG 3 cut(s) 484, 515, 575
HspAI GCGC 1 cut(s) 190
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
LmnI GCTCC 1 cut(s) 521
Lsp1109I GCAGC 2 cut(s) 162, 211
LweI GCATC 1 cut(s) 264
MaeII ACGT 3 cut(s) 291, 385, 489
MaeIII GTNAC 1 cut(s) 428
MboII GAAGA 3 cut(s) 587, 594, 597
MluCI AATT 2 cut(s) 107, 676
MlyI GAGTC 2 cut(s) 164, 449
MmeI TCCRAC 1 cut(s) 69
MroNI GCCGGC 1 cut(s) 251
MseI TTAA 1 cut(s) 602
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 2 cut(s) 182, 616
MvaI CCWGG 2 cut(s) 182, 616
MwoI GCNNNNNNNGC 4 cut(s) 196, 326, 444, 453
NaeI GCCGGC 1 cut(s) 253
NcoI CCATGG 1 cut(s) 511
NgoMIV GCCGGC 1 cut(s) 251
NlaIII CATG 3 cut(s) 484, 515, 575
NlaIV GGNNCC 2 cut(s) 160, 517
NmuCI GTSAC 1 cut(s) 428
NspI RCATGY 1 cut(s) 484
PaqCI CACCTGC 1 cut(s) 416
PcsI WCGNNNNNNNCGW 3 cut(s) 126, 288, 528
PdiI GCCGGC 1 cut(s) 253
PfeI GAWTC 2 cut(s) 41, 138
PflFI GACNNNGTC 4 cut(s) 173, 290, 299, 527
PkrI GCNGC 7 cut(s) 103, 152, 194, 201, 349, 411, 455
PleI GAGTC 2 cut(s) 164, 448
PpsI GAGTC 2 cut(s) 164, 448
PpuMI RGGWCCY 1 cut(s) 159
Psp5II RGGWCCY 1 cut(s) 159
Psp6I CCWGG 2 cut(s) 180, 614
PspFI CCCAGC 2 cut(s) 186, 216
PspGI CCWGG 2 cut(s) 180, 614
PspN4I GGNNCC 2 cut(s) 160, 517
PspPI GGNCC 2 cut(s) 159, 184
PspPPI RGGWCCY 1 cut(s) 159
PsyI GACNNNGTC 4 cut(s) 173, 290, 299, 527
RsaI GTAC 2 cut(s) 209, 399
RsaNI GTAC 2 cut(s) 208, 398
SalI GTCGAC 2 cut(s) 293, 311
SaqAI TTAA 1 cut(s) 602
SatI GCNGC 7 cut(s) 102, 151, 193, 200, 348, 410, 454
Sau96I GGNCC 2 cut(s) 159, 184
SchI GAGTC 2 cut(s) 164, 449
ScrFI CCNGG 2 cut(s) 182, 616
SfaNI GCATC 1 cut(s) 264
SgrDI CGTCGACG 1 cut(s) 293
SinI GGWCC 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 2 cut(s) 107, 676
SsiI CCGC 7 cut(s) 102, 193, 268, 327, 348, 410, 453
StyD4I CCNGG 2 cut(s) 180, 614
StyI CCWWGG 2 cut(s) 351, 511
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 3 cut(s) 294, 388, 492
TaqI TCGA 4 cut(s) 294, 312, 375, 522
TasI AATT 2 cut(s) 107, 676
TauI GCSGC 5 cut(s) 104, 195, 350, 412, 456
TfiI GAWTC 2 cut(s) 41, 138
Tru1I TTAA 1 cut(s) 602
Tru9I TTAA 1 cut(s) 602
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 2 cut(s) 150, 199
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 1 cut(s) 70
TspGWI ACGGA 3 cut(s) 163, 479, 640
Tth111I GACNNNGTC 4 cut(s) 173, 290, 299, 527
VpaK11BI GGWCC 1 cut(s) 159
XagI CCTNNNNNAGG 1 cut(s) 341
XapI RAATTY 2 cut(s) 107, 676
XceI RCATGY 1 cut(s) 484
XcmI CCANNNNNNNNNTGG 1 cut(s) 555
XmiI GTMKAC 2 cut(s) 294, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.