Rmu_sc0034927.1_g000001

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034927.1
OG0005210
Physical Location & Seq
Reverse (-)
47 .. 620
574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034927.1_g000001.1.cds

Sequence Viewer

Length: 574 bp
attctcccaccacgaccccaccgtcgcccgaatcaacaacggcagcttcgggtcctgccccgactccgtcctcccggcccagcgccactggcagctcaagtacctctcccagcccgatcacttctacttcaaccacctccaagccgggatcctccactcccgcaccctcatcaaggacctcatcaacgtcgaccacgtcgacgaggtctccatcgtcgacaacgccaccaccgtcgccgccatcgtcctccagcaggccgcctggggcttctccgagagcaagttcgagcagggcgacgccgtcgtcatgctccactacgcctacggcgccgtcaagaagtcgattgaggcctacgtcactcacgccggcgggcacgtcattgaggtacccttgccgtttcctttgaattccaacgatgagattgtaaccgagtttaagaaggctttggagaaggggaaggataatggtaggagggttaggctacattccttctcccgattgccacgtcaactccgtcaagtggaaccacaccagttagtcactctcactcttgttcttcatttgttgatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

190

Amino Acids

21.39

Weight (kDa)

6.97

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 21, 303
Acc65I GGTACC 1 cut(s) 386
AccB1I GGYRCC 2 cut(s) 327, 386
AccI GTMKAC 3 cut(s) 190, 199, 217
AciI CCGC 4 cut(s) 161, 238, 259, 370
AclWI GGATC 2 cut(s) 143, 156
AcsI RAATTY 1 cut(s) 407
AcyI GRCGYC 2 cut(s) 298, 328
AfaI GTAC 2 cut(s) 102, 388
AfiI CCNNNNNNNGG 3 cut(s) 173, 254, 521
AgsI TTSAA 2 cut(s) 131, 407
AjiI CACGTC 3 cut(s) 197, 377, 507
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 2 cut(s) 46, 95
AluI AGCT 2 cut(s) 46, 95
Alw26I GTCTC 1 cut(s) 212
AlwI GGATC 2 cut(s) 143, 156
AoxI GGCC 3 cut(s) 76, 256, 349
ApeKI GCWGC 2 cut(s) 43, 92
ApoI RAATTY 1 cut(s) 407
Asp718I GGTACC 1 cut(s) 386
AspLEI GCGC 2 cut(s) 85, 330
AspS9I GGNCC 3 cut(s) 52, 77, 176
AsuC2I CCSGG 2 cut(s) 75, 146
AvaII GGWCC 2 cut(s) 52, 176
BaeGI GKGCMC 1 cut(s) 376
BamHI GGATCC 1 cut(s) 148
BanI GGYRCC 2 cut(s) 327, 386
BbvI GCAGC 2 cut(s) 55, 104
BccI CCATC 2 cut(s) 219, 249
BceAI ACGGC 5 cut(s) 56, 285, 315, 341, 380
BciT130I CCWGG 1 cut(s) 263
BcnI CCSGG 2 cut(s) 75, 146
BcoDI GTCTC 1 cut(s) 212
BfoI RGCGCY 2 cut(s) 86, 331
BisI GCNGC 4 cut(s) 44, 93, 238, 259
BlsI GCNGC 4 cut(s) 45, 94, 239, 260
Bme1390I CCNGG 3 cut(s) 75, 146, 263
Bme18I GGWCC 2 cut(s) 52, 176
BmgBI CACGTC 3 cut(s) 197, 377, 507
BmgT120I GGNCC 3 cut(s) 52, 77, 176
BmiI GGNNCC 5 cut(s) 53, 150, 329, 388, 526
BmrFI CCNGG 3 cut(s) 75, 146, 263
BpmI CTGGAG 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 81
BpuMI CCSGG 2 cut(s) 75, 146
BsaHI GRCGYC 2 cut(s) 298, 328
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 262
BsaXI ACNNNNNCTCC 4 cut(s) 192, 222, 496, 526
Bsc4I CCNNNNNNNGG 3 cut(s) 173, 254, 521
Bse118I RCCGGY 1 cut(s) 366
Bse1I ACTGG 2 cut(s) 93, 533
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 262
BseLI CCNNNNNNNGG 3 cut(s) 173, 254, 521
BseNI ACTGG 2 cut(s) 93, 533
BseSI GKGCMC 1 cut(s) 376
BseXI GCAGC 2 cut(s) 55, 104
BseYI CCCAGC 2 cut(s) 79, 109
BshFI GGCC 3 cut(s) 78, 258, 351
BshNI GGYRCC 2 cut(s) 327, 386
BsiSI CCGG 3 cut(s) 75, 145, 367
BslI CCNNNNNNNGG 3 cut(s) 173, 254, 521
BsmAI GTCTC 1 cut(s) 212
BsnI GGCC 3 cut(s) 78, 258, 351
Bso31I GGTCTC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 376
Bsp143I GATC 2 cut(s) 116, 148
BspACI CCGC 4 cut(s) 161, 238, 259, 370
BspANI GGCC 3 cut(s) 78, 258, 351
BspLI GGNNCC 5 cut(s) 53, 150, 329, 388, 526
BspPI GGATC 2 cut(s) 143, 156
BspT107I GGYRCC 2 cut(s) 327, 386
BspTNI GGTCTC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 366
BsrI ACTGG 2 cut(s) 93, 533
BssAI RCCGGY 1 cut(s) 366
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 2 cut(s) 116, 148
BssNI GRCGYC 2 cut(s) 298, 328
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 2 cut(s) 23, 233
BstACI GRCGYC 2 cut(s) 298, 328
BstC8I GCNNGC 3 cut(s) 256, 368, 372
BstENI CCTNNNNNAGG 2 cut(s) 171, 252
BstH2I RGCGCY 2 cut(s) 86, 331
BstHHI GCGC 2 cut(s) 85, 330
BstKTI GATC 2 cut(s) 119, 151
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 2 cut(s) 116, 148
BstMWI GCNNNNNNNGC 2 cut(s) 89, 327
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 3 cut(s) 73, 144, 261
BstSLI GKGCMC 1 cut(s) 376
BstV1I GCAGC 2 cut(s) 55, 104
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BsuRI GGCC 3 cut(s) 78, 258, 351
BtrI CACGTC 3 cut(s) 197, 377, 507
BtsIMutI CAGTG 1 cut(s) 86
Cac8I GCNNGC 3 cut(s) 256, 368, 372
CfoI GCGC 2 cut(s) 85, 330
Cfr10I RCCGGY 1 cut(s) 366
Cfr13I GGNCC 3 cut(s) 52, 77, 176
CseI GACGC 1 cut(s) 306
Csp6I GTAC 2 cut(s) 101, 387
CviAII CATG 1 cut(s) 308
CviQI GTAC 2 cut(s) 101, 387
DinI GGCGCC 1 cut(s) 329
DpnI GATC 2 cut(s) 118, 150
DpnII GATC 2 cut(s) 116, 148
DrdI GACNNNNNNGTC 2 cut(s) 21, 303
DseDI GACNNNNNNGTC 2 cut(s) 21, 303
Eco147I AGGCCT 1 cut(s) 351
Eco31I GGTCTC 1 cut(s) 212
Eco47I GGWCC 2 cut(s) 52, 176
EcoNI CCTNNNNNAGG 2 cut(s) 171, 252
EcoO109I RGGNCCY 2 cut(s) 52, 176
EcoRI GAATTC 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 261
EgeI GGCGCC 1 cut(s) 329
EheI GGCGCC 1 cut(s) 329
FaeI CATG 1 cut(s) 311
FaiI YATR 1 cut(s) 309
FatI CATG 1 cut(s) 307
FauI CCCGC 2 cut(s) 168, 363
FblI GTMKAC 3 cut(s) 190, 199, 217
Fnu4HI GCNGC 4 cut(s) 44, 93, 238, 259
Fsp4HI GCNGC 4 cut(s) 44, 93, 238, 259
GlaI GCGC 2 cut(s) 84, 329
GluI GCNGC 4 cut(s) 44, 93, 238, 259
GsaI CCCAGC 2 cut(s) 83, 113
GsuI CTGGAG 1 cut(s) 234
HaeII RGCGCY 2 cut(s) 86, 331
HaeIII GGCC 3 cut(s) 78, 258, 351
HapII CCGG 3 cut(s) 75, 145, 367
HgaI GACGC 1 cut(s) 306
HhaI GCGC 2 cut(s) 85, 330
Hin1I GRCGYC 2 cut(s) 298, 328
Hin1II CATG 1 cut(s) 311
Hin6I GCGC 2 cut(s) 83, 328
HinP1I GCGC 2 cut(s) 83, 328
HincII GTYRAC 4 cut(s) 191, 200, 218, 510
HindII GTYRAC 4 cut(s) 191, 200, 218, 510
HinfI GANTC 2 cut(s) 31, 63
HpaII CCGG 3 cut(s) 75, 145, 367
Hpy166II GTNNAC 4 cut(s) 191, 200, 218, 510
Hpy188I TCNGA 1 cut(s) 275
Hpy188III TCNNGA 2 cut(s) 335, 496
Hpy8I GTNNAC 4 cut(s) 191, 200, 218, 510
Hpy99I CGWCG 8 cut(s) 27, 192, 201, 204, 219, 237, 300, 306
HpyAV CCTTC 4 cut(s) 434, 446, 452, 500
HpyCH4III ACNGT 2 cut(s) 23, 233
HpyCH4IV ACGT 5 cut(s) 187, 196, 355, 376, 506
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 327
HpySE526I ACGT 5 cut(s) 187, 196, 355, 376, 506
Hsp92I GRCGYC 2 cut(s) 298, 328
Hsp92II CATG 1 cut(s) 311
HspAI GCGC 2 cut(s) 83, 328
KasI GGCGCC 1 cut(s) 327
KpnI GGTACC 1 cut(s) 390
KroI GCCGGC 1 cut(s) 366
KroNI GCCGGC 1 cut(s) 368
Kzo9I GATC 2 cut(s) 116, 148
LmnI GCTCC 1 cut(s) 316
Lsp1109I GCAGC 2 cut(s) 55, 104
MaeII ACGT 5 cut(s) 187, 196, 355, 376, 506
MaeIII GTNAC 3 cut(s) 356, 425, 539
MalI GATC 2 cut(s) 118, 150
MboI GATC 2 cut(s) 116, 148
MboII GAAGA 1 cut(s) 549
MflI RGATCY 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 376
MluCI AATT 1 cut(s) 407
Mly113I GGCGCC 1 cut(s) 328
MlyI GAGTC 1 cut(s) 57
MmeI TCCRAC 1 cut(s) 436
MreI CGCCGGCG 1 cut(s) 366
MroNI GCCGGC 1 cut(s) 366
MseI TTAA 1 cut(s) 436
MspI CCGG 3 cut(s) 75, 145, 367
MspR9I CCNGG 3 cut(s) 75, 146, 263
MvaI CCWGG 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 89, 327
NaeI GCCGGC 1 cut(s) 368
NarI GGCGCC 1 cut(s) 328
NciI CCSGG 2 cut(s) 75, 146
NdeII GATC 2 cut(s) 116, 148
NgoMIV GCCGGC 1 cut(s) 366
NlaIII CATG 1 cut(s) 311
NlaIV GGNNCC 5 cut(s) 53, 150, 329, 388, 526
NmuCI GTSAC 2 cut(s) 356, 539
PceI AGGCCT 1 cut(s) 351
PcsI WCGNNNNNNNCGW 7 cut(s) 19, 193, 196, 229, 241, 292, 512
PdiI GCCGGC 1 cut(s) 368
PfeI GAWTC 1 cut(s) 31
PflFI GACNNNGTC 4 cut(s) 66, 195, 204, 300
PkrI GCNGC 4 cut(s) 45, 94, 239, 260
PleI GAGTC 1 cut(s) 57
PluTI GGCGCC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 57
PpuMI RGGWCCY 2 cut(s) 52, 176
Psp5II RGGWCCY 2 cut(s) 52, 176
Psp6I CCWGG 1 cut(s) 261
PspFI CCCAGC 2 cut(s) 79, 109
PspGI CCWGG 1 cut(s) 261
PspN4I GGNNCC 5 cut(s) 53, 150, 329, 388, 526
PspPI GGNCC 3 cut(s) 52, 77, 176
PspPPI RGGWCCY 2 cut(s) 52, 176
PsuI RGATCY 1 cut(s) 148
PsyI GACNNNGTC 4 cut(s) 66, 195, 204, 300
RsaI GTAC 2 cut(s) 102, 388
RsaNI GTAC 2 cut(s) 101, 387
SalI GTCGAC 3 cut(s) 189, 198, 216
SaqAI TTAA 1 cut(s) 436
SatI GCNGC 4 cut(s) 44, 93, 238, 259
Sau3AI GATC 2 cut(s) 116, 148
Sau96I GGNCC 3 cut(s) 52, 77, 176
SchI GAGTC 1 cut(s) 57
ScrFI CCNGG 3 cut(s) 75, 146, 263
SduI GDGCHC 1 cut(s) 376
SfoI GGCGCC 1 cut(s) 329
SgrAI CRCCGGYG 1 cut(s) 366
SgrDI CGTCGACG 1 cut(s) 198
SinI GGWCC 2 cut(s) 52, 176
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
Sse9I AATT 1 cut(s) 407
SseBI AGGCCT 1 cut(s) 351
SsiI CCGC 4 cut(s) 161, 238, 259, 370
SspDI GGCGCC 1 cut(s) 327
StuI AGGCCT 1 cut(s) 351
StyD4I CCNGG 3 cut(s) 73, 144, 261
TaaI ACNGT 2 cut(s) 23, 233
TaiI ACGT 5 cut(s) 190, 199, 358, 379, 509
TaqI TCGA 5 cut(s) 190, 199, 217, 286, 342
TasI AATT 1 cut(s) 407
TauI GCSGC 2 cut(s) 240, 261
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 1 cut(s) 436
Tru9I TTAA 1 cut(s) 436
TscAI CASTG 1 cut(s) 93
TseFI GTSAC 2 cut(s) 356, 539
TseI GCWGC 2 cut(s) 43, 92
Tsp45I GTSAC 2 cut(s) 356, 539
TspDTI ATGAA 1 cut(s) 549
TspGWI ACGGA 2 cut(s) 56, 504
TspRI CASTG 1 cut(s) 93
Tth111I GACNNNGTC 4 cut(s) 66, 195, 204, 300
VpaK11BI GGWCC 2 cut(s) 52, 176
XagI CCTNNNNNAGG 2 cut(s) 171, 252
XapI RAATTY 1 cut(s) 407
XmiI GTMKAC 3 cut(s) 190, 199, 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.