Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005210

Physical Location & Seq

Genomic Coordinates Reverse (-)

74204648 .. 74205332

Gene Structure 685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG533000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCCTCCTCCCCCGACCACAACCACACCCTGAACGGCGATTCCAACACCCACGCCTCCAAAAAGCCCAAACTCTCCTTCATCACCCCCTCCGAAATCGCCTCTGAATTCTCCCACCACGACCCCACCGTCGCCCGAATCAACAACGGCAGCTTCGAGTCCTGCCCTGACTCCGTCCTCCAGGCCCAGCGCCGCTGGCAGCTCAAGTACATCTCCCAGCCCGATCACTTCTACTTCAACCACCTCCAAGCCGGCATCCTCCACTCCCGCACCCTCATCAAGGACCTCATCAACGCCACCACCGCCGCCGCCATCGTCCTCCAGCAGGCCGCCTGGGGCTTCTCCGATAGCAAGTTCGAGCAGGACGACGTTGTCGTCATGCTCCACTACGCCTACGGCGTCGTCAAGAAGTCGATTGAGGCCTACGTCACTCGCGCCGGCGGGCACGTCATTGAGGTACCCTTGCCGTTTCCTTTGAGGAAGAGAAGCAAACACGAGCTGCGGCATAAAAGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

172

Amino Acids

19.41

Weight (kDa)

9.24

Isoelectric Point (pI)

65.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005210)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390731 RchiOBHm_Chr5g0024111
rosa_multiflora	Rmu_sc0004031.1_g000007 Rmu_sc0013809.1_g000011 Rmu_sc0034927.1_g000001
rosa_rugosa	Rorug03G0108500 Rorug04G0346300 Rorug05G0081600 Rorug06G0311200 Rorug07G0213800
rosa_samantha	Rh1DG023500 Rh1DG057300 Rh2BG158100 Rh2BG387200 Rh2BG406800 Rh2BG533000 Rh2CG336200 Rh3BG347400 Rh3CG300700 Rh4CG141500 Rh4CG158300 Rh4DG375200 Rh5BG362200 Rh6CG135300 Rh6CG212500 Rh7CG199100 Rh7DG321700 Rh7DG335400 Rh7DG393400
rosa_wichuraiana	Rw4G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	128, 371, 374
Acc65I	GGTACC	1 cut(s)	457
AccB1I	GGYRCC	1 cut(s)	457
AccII	CGCG	1 cut(s)	435
AciI	CCGC	8 cut(s)	193, 268, 303, 306, 309, 330, 441, 502
AcsI	RAATTY	1 cut(s)	107
AcyI	GRCGYC	1 cut(s)	399
AfaI	GTAC	2 cut(s)	209, 459
AfiI	CCNNNNNNNGG	2 cut(s)	280, 325
AgsI	TTSAA	1 cut(s)	238
AjiI	CACGTC	1 cut(s)	448
AjnI	CCWGG	2 cut(s)	180, 332
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
AluBI	AGCT	3 cut(s)	153, 202, 499
AluI	AGCT	3 cut(s)	153, 202, 499
AoxI	GGCC	4 cut(s)	3, 183, 327, 420
ApeKI	GCWGC	3 cut(s)	150, 199, 499
ApoI	RAATTY	1 cut(s)	107
Asp718I	GGTACC	1 cut(s)	457
AspLEI	GCGC	2 cut(s)	192, 437
AspS9I	GGNCC	2 cut(s)	184, 283
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	283
BaeGI	GKGCMC	1 cut(s)	447
BanI	GGYRCC	1 cut(s)	457
BauI	CACGAG	1 cut(s)	494
BbvI	GCAGC	3 cut(s)	162, 211, 486
BccI	CCATC	1 cut(s)	320
BceAI	ACGGC	4 cut(s)	52, 163, 412, 451
BciT130I	CCWGG	2 cut(s)	182, 334
BfoI	RGCGCY	1 cut(s)	193
BisI	GCNGC	8 cut(s)	151, 193, 200, 306, 309, 330, 500, 503
BlsI	GCNGC	8 cut(s)	152, 194, 201, 307, 310, 331, 501, 504
Bme1390I	CCNGG	2 cut(s)	182, 334
Bme18I	GGWCC	1 cut(s)	283
BmgBI	CACGTC	1 cut(s)	448
BmgT120I	GGNCC	2 cut(s)	184, 283
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	2 cut(s)	182, 334
BmsI	GCATC	1 cut(s)	264
BpmI	CTGGAG	2 cut(s)	164, 305
BpuEI	CTTGAG	1 cut(s)	188
BsaHI	GRCGYC	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 325
Bse118I	RCCGGY	2 cut(s)	251, 437
BseBI	CCWGG	2 cut(s)	182, 334
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	280, 325
BseSI	GKGCMC	1 cut(s)	447
BseXI	GCAGC	3 cut(s)	162, 211, 486
BseYI	CCCAGC	2 cut(s)	186, 216
Bsh1236I	CGCG	1 cut(s)	435
BshFI	GGCC	4 cut(s)	5, 185, 329, 422
BshNI	GGYRCC	1 cut(s)	457
BsiSI	CCGG	2 cut(s)	252, 438
BslI	CCNNNNNNNGG	2 cut(s)	280, 325
BsnI	GGCC	4 cut(s)	5, 185, 329, 422
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	8 cut(s)	193, 268, 303, 306, 309, 330, 441, 502
BspANI	GGCC	4 cut(s)	5, 185, 329, 422
BspFNI	CGCG	1 cut(s)	435
BspLI	GGNNCC	1 cut(s)	459
BspT107I	GGYRCC	1 cut(s)	457
BsrFI	RCCGGY	2 cut(s)	251, 437
BssAI	RCCGGY	2 cut(s)	251, 437
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	1 cut(s)	223
BssNI	GRCGYC	1 cut(s)	399
BssSI	CACGAG	1 cut(s)	494
Bst2BI	CACGAG	1 cut(s)	494
Bst2UI	CCWGG	2 cut(s)	182, 334
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	476
BstACI	GRCGYC	1 cut(s)	399
BstC8I	GCNNGC	5 cut(s)	197, 253, 327, 439, 443
BstENI	CCTNNNNNAGG	2 cut(s)	278, 323
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	435
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	2 cut(s)	192, 437
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	3 cut(s)	196, 302, 511
BstNI	CCWGG	2 cut(s)	182, 334
BstSCI	CCNGG	2 cut(s)	180, 332
BstSLI	GKGCMC	1 cut(s)	447
BstUI	CGCG	1 cut(s)	435
BstV1I	GCAGC	3 cut(s)	162, 211, 486
BsuRI	GGCC	4 cut(s)	5, 185, 329, 422
BtrI	CACGTC	1 cut(s)	448
BtsCI	GGATG	1 cut(s)	255
Cac8I	GCNNGC	5 cut(s)	197, 253, 327, 439, 443
CfoI	GCGC	2 cut(s)	192, 437
Cfr10I	RCCGGY	2 cut(s)	251, 437
Cfr13I	GGNCC	2 cut(s)	184, 283
CseI	GACGC	1 cut(s)	388
Csp6I	GTAC	2 cut(s)	208, 458
CviAII	CATG	1 cut(s)	379
CviQI	GTAC	2 cut(s)	208, 458
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
DrdI	GACNNNNNNGTC	3 cut(s)	128, 371, 374
DseDI	GACNNNNNNGTC	3 cut(s)	128, 371, 374
Eam1104I	CTCTTC	1 cut(s)	476
EarI	CTCTTC	1 cut(s)	476
Eco147I	AGGCCT	1 cut(s)	422
Eco47I	GGWCC	1 cut(s)	283
EcoNI	CCTNNNNNAGG	2 cut(s)	278, 323
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	107
EcoRII	CCWGG	2 cut(s)	180, 332
FaeI	CATG	1 cut(s)	382
FaiI	YATR	2 cut(s)	380, 507
FatI	CATG	1 cut(s)	378
FauI	CCCGC	2 cut(s)	275, 434
Fnu4HI	GCNGC	8 cut(s)	151, 193, 200, 306, 309, 330, 500, 503
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	8 cut(s)	151, 193, 200, 306, 309, 330, 500, 503
GlaI	GCGC	2 cut(s)	191, 436
GluI	GCNGC	8 cut(s)	151, 193, 200, 306, 309, 330, 500, 503
GsaI	CCCAGC	2 cut(s)	190, 220
GsuI	CTGGAG	2 cut(s)	164, 305
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	4 cut(s)	5, 185, 329, 422
HapII	CCGG	2 cut(s)	252, 438
HgaI	GACGC	1 cut(s)	388
HhaI	GCGC	2 cut(s)	192, 437
Hin1I	GRCGYC	1 cut(s)	399
Hin1II	CATG	1 cut(s)	382
Hin6I	GCGC	2 cut(s)	190, 435
HinP1I	GCGC	2 cut(s)	190, 435
HinfI	GANTC	4 cut(s)	41, 138, 158, 170
HpaII	CCGG	2 cut(s)	252, 438
HphI	GGTGA	1 cut(s)	76
Hpy188I	TCNGA	4 cut(s)	94, 106, 346, 518
Hpy188III	TCNNGA	1 cut(s)	406
Hpy99I	CGWCG	3 cut(s)	134, 371, 404
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	3 cut(s)	369, 426, 447
HpyF10VI	GCNNNNNNNGC	3 cut(s)	196, 302, 511
HpySE526I	ACGT	3 cut(s)	369, 426, 447
Hsp92I	GRCGYC	1 cut(s)	399
Hsp92II	CATG	1 cut(s)	382
HspAI	GCGC	2 cut(s)	190, 435
KpnI	GGTACC	1 cut(s)	461
KroI	GCCGGC	2 cut(s)	251, 437
KroNI	GCCGGC	2 cut(s)	253, 439
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	387
Lsp1109I	GCAGC	3 cut(s)	162, 211, 486
LweI	GCATC	1 cut(s)	264
MaeII	ACGT	3 cut(s)	369, 426, 447
MaeIII	GTNAC	1 cut(s)	427
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	1 cut(s)	493
MhlI	GDGCHC	1 cut(s)	447
MluCI	AATT	1 cut(s)	107
MlyI	GAGTC	2 cut(s)	164, 167
MmeI	TCCRAC	1 cut(s)	69
MreI	CGCCGGCG	1 cut(s)	437
MroNI	GCCGGC	2 cut(s)	251, 437
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	2 cut(s)	252, 438
MspR9I	CCNGG	2 cut(s)	182, 334
MvaI	CCWGG	2 cut(s)	182, 334
MvnI	CGCG	1 cut(s)	435
MwoI	GCNNNNNNNGC	3 cut(s)	196, 302, 511
NaeI	GCCGGC	2 cut(s)	253, 439
NdeII	GATC	1 cut(s)	223
NgoMIV	GCCGGC	2 cut(s)	251, 437
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	1 cut(s)	459
NmuCI	GTSAC	1 cut(s)	427
PceI	AGGCCT	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	5 cut(s)	126, 153, 363, 372, 396
PdiI	GCCGGC	2 cut(s)	253, 439
PfeI	GAWTC	2 cut(s)	41, 138
PflFI	GACNNNGTC	2 cut(s)	173, 371
PkrI	GCNGC	8 cut(s)	152, 194, 201, 307, 310, 331, 501, 504
PleI	GAGTC	2 cut(s)	164, 166
PpsI	GAGTC	2 cut(s)	164, 166
PpuMI	RGGWCCY	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	283
Psp6I	CCWGG	2 cut(s)	180, 332
PspFI	CCCAGC	2 cut(s)	186, 216
PspGI	CCWGG	2 cut(s)	180, 332
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	2 cut(s)	184, 283
PspPPI	RGGWCCY	1 cut(s)	283
PsyI	GACNNNGTC	2 cut(s)	173, 371
RsaI	GTAC	2 cut(s)	209, 459
RsaNI	GTAC	2 cut(s)	208, 458
SatI	GCNGC	8 cut(s)	151, 193, 200, 306, 309, 330, 500, 503
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	2 cut(s)	184, 283
SchI	GAGTC	2 cut(s)	164, 167
ScrFI	CCNGG	2 cut(s)	182, 334
SduI	GDGCHC	1 cut(s)	447
SetI	ASST	9 cut(s)	155, 204, 246, 288, 372, 429, 450, 459, 501
SfaNI	GCATC	1 cut(s)	264
SgrAI	CRCCGGYG	1 cut(s)	437
SinI	GGWCC	1 cut(s)	283
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	107
SseBI	AGGCCT	1 cut(s)	422
SsiI	CCGC	8 cut(s)	193, 268, 303, 306, 309, 330, 441, 502
StuI	AGGCCT	1 cut(s)	422
StyD4I	CCNGG	2 cut(s)	180, 332
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	3 cut(s)	372, 429, 450
TaqI	TCGA	3 cut(s)	156, 357, 413
TasI	AATT	1 cut(s)	107
TatI	WGTACW	1 cut(s)	207
TauI	GCSGC	5 cut(s)	195, 308, 311, 332, 505
TfiI	GAWTC	2 cut(s)	41, 138
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	3 cut(s)	150, 199, 499
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	1 cut(s)	70
TspGWI	ACGGA	1 cut(s)	163
Tth111I	GACNNNGTC	2 cut(s)	173, 371
VpaK11BI	GGWCC	1 cut(s)	283
XagI	CCTNNNNNAGG	2 cut(s)	278, 323
XapI	RAATTY	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.