Rh1DG057300

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005210
Physical Location & Seq
Forward (+)
9332961 .. 9336265
3305 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG057300.1

Sequence Viewer

Length: 546 bp
ATGGCCTCCTCCCCCGACTACAACCACACCCTGAACGGCGATTCCAACACCCACGCCTCCAAAAAGCCCAAACTCTCCTTCATCACCCCCTCCGAAATCGCCGCCAAATTCTCCCACCACGACCCCACCGTCGCCCGAATCAACAACGGCAGCTTCGGGTCCTGCCCCTACTCCGTCCTCCAGGCCCAACGCTGCTGGCAGCTCAAGTACCTCTCCCACCTCCAAGCCGGCATCCTCCACTCTCGCACCCTCATCAAGGACCTTATCAACGCCGACCACGTCGACGAGGTCTCCATCGTCGACAACGCCACCACCGCCGCCGCCATCGTCCTCCAGCAGGCCGCCTGGGGCTTCTCCGAGAGCAAATGTGTTAGTCGAGATGAGGCCGCCTTGGCTGTGGCTCAAAAGGCCACAAAAAATTATGAAAAAGCTGTCTTGCTGAACTGGAACAGTCCCCAGGCAAAGCCATGGCCTTTTACTGAGTGGAAGTTTTATAGCATTTTCTTTATTCGTGGCGCATCAATTTATGCAGAACAGGTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

181

Amino Acids

20.1

Weight (kDa)

8.73

Isoelectric Point (pI)

31.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
AccI GTMKAC 2 cut(s) 282, 300
AciI CCGC 6 cut(s) 102, 315, 318, 321, 342, 387
AcsI RAATTY 1 cut(s) 107
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 256, 337
AjiI CACGTC 1 cut(s) 280
AjnI CCWGG 3 cut(s) 180, 344, 456
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AloI GAACNNNNNNTCC 2 cut(s) 26, 58
AluBI AGCT 3 cut(s) 153, 202, 431
AluI AGCT 3 cut(s) 153, 202, 431
Alw26I GTCTC 1 cut(s) 295
AoxI GGCC 6 cut(s) 3, 183, 339, 384, 408, 470
ApeKI GCWGC 3 cut(s) 150, 192, 199
ApoI RAATTY 1 cut(s) 107
AspLEI GCGC 1 cut(s) 518
AspS9I GGNCC 3 cut(s) 159, 184, 259
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 2 cut(s) 159, 259
BbvI GCAGC 3 cut(s) 162, 179, 211
BccI CCATC 2 cut(s) 302, 332
BceAI ACGGC 2 cut(s) 52, 163
BciT130I CCWGG 3 cut(s) 182, 346, 458
BcoDI GTCTC 1 cut(s) 295
BglI GCCNNNNNGGC 1 cut(s) 392
BisI GCNGC 8 cut(s) 102, 151, 193, 200, 318, 321, 342, 387
BlsI GCNGC 8 cut(s) 103, 152, 194, 201, 319, 322, 343, 388
Bme1390I CCNGG 3 cut(s) 182, 346, 458
Bme18I GGWCC 2 cut(s) 159, 259
BmgBI CACGTC 1 cut(s) 280
BmgT120I GGNCC 3 cut(s) 159, 184, 259
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 3 cut(s) 182, 346, 458
BmsI GCATC 2 cut(s) 240, 527
BpmI CTGGAG 2 cut(s) 164, 317
BpuEI CTTGAG 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 295
BsaJI CCNNGG 4 cut(s) 345, 390, 456, 467
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 337
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 449
BseBI CCWGG 3 cut(s) 182, 346, 458
BseDI CCNNGG 4 cut(s) 345, 390, 456, 467
BseGI GGATG 1 cut(s) 231
BseLI CCNNNNNNNGG 2 cut(s) 256, 337
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 1 cut(s) 449
BseXI GCAGC 3 cut(s) 162, 179, 211
BshFI GGCC 6 cut(s) 5, 185, 341, 386, 410, 472
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 1 cut(s) 438
BslI CCNNNNNNNGG 2 cut(s) 256, 337
BsmAI GTCTC 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 438
BsnI GGCC 6 cut(s) 5, 185, 341, 386, 410, 472
Bso31I GGTCTC 1 cut(s) 295
Bsp19I CCATGG 1 cut(s) 467
BspACI CCGC 6 cut(s) 102, 315, 318, 321, 342, 387
BspANI GGCC 6 cut(s) 5, 185, 341, 386, 410, 472
BspCNI CTCAG 1 cut(s) 472
BspLI GGNNCC 1 cut(s) 160
BspTNI GGTCTC 1 cut(s) 295
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 1 cut(s) 449
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 4 cut(s) 345, 390, 456, 467
BssT1I CCWWGG 2 cut(s) 390, 467
Bst2UI CCWGG 3 cut(s) 182, 346, 458
Bst4CI ACNGT 2 cut(s) 130, 452
BstC8I GCNNGC 3 cut(s) 197, 229, 339
BstDEI CTNAG 1 cut(s) 480
BstDSI CCRYGG 1 cut(s) 467
BstENI CCTNNNNNAGG 2 cut(s) 254, 335
BstF5I GGATG 1 cut(s) 231
BstHHI GCGC 1 cut(s) 518
BstMAI GTCTC 1 cut(s) 295
BstMWI GCNNNNNNNGC 3 cut(s) 314, 392, 407
BstNI CCWGG 3 cut(s) 182, 346, 458
BstSCI CCNGG 3 cut(s) 180, 344, 456
BstV1I GCAGC 3 cut(s) 162, 179, 211
BsuRI GGCC 6 cut(s) 5, 185, 341, 386, 410, 472
BtgI CCRYGG 1 cut(s) 467
BtrI CACGTC 1 cut(s) 280
BtsCI GGATG 1 cut(s) 231
Cac8I GCNNGC 3 cut(s) 197, 229, 339
CfoI GCGC 1 cut(s) 518
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 3 cut(s) 159, 184, 259
Csp6I GTAC 1 cut(s) 208
CviAII CATG 1 cut(s) 468
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 1 cut(s) 480
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
Eco130I CCWWGG 2 cut(s) 390, 467
Eco31I GGTCTC 1 cut(s) 295
Eco47I GGWCC 2 cut(s) 159, 259
EcoNI CCTNNNNNAGG 2 cut(s) 254, 335
EcoO109I RGGNCCY 2 cut(s) 159, 259
EcoRII CCWGG 3 cut(s) 180, 344, 456
EcoT14I CCWWGG 2 cut(s) 390, 467
ErhI CCWWGG 2 cut(s) 390, 467
FaeI CATG 1 cut(s) 471
FaiI YATR 4 cut(s) 423, 469, 495, 528
FaqI GGGAC 1 cut(s) 438
FatI CATG 1 cut(s) 467
FblI GTMKAC 2 cut(s) 282, 300
Fnu4HI GCNGC 8 cut(s) 102, 151, 193, 200, 318, 321, 342, 387
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 8 cut(s) 102, 151, 193, 200, 318, 321, 342, 387
GlaI GCGC 1 cut(s) 517
GluI GCNGC 8 cut(s) 102, 151, 193, 200, 318, 321, 342, 387
GsuI CTGGAG 2 cut(s) 164, 317
HaeIII GGCC 6 cut(s) 5, 185, 341, 386, 410, 472
HapII CCGG 1 cut(s) 228
HhaI GCGC 1 cut(s) 518
Hin1II CATG 1 cut(s) 471
Hin6I GCGC 1 cut(s) 516
HinP1I GCGC 1 cut(s) 516
HincII GTYRAC 2 cut(s) 283, 301
HindII GTYRAC 2 cut(s) 283, 301
HinfI GANTC 2 cut(s) 41, 138
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 2 cut(s) 283, 301
Hpy188I TCNGA 2 cut(s) 94, 358
Hpy188III TCNNGA 1 cut(s) 377
Hpy8I GTNNAC 2 cut(s) 283, 301
Hpy99I CGWCG 4 cut(s) 134, 284, 287, 302
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 2 cut(s) 130, 452
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 1 cut(s) 530
HpyF10VI GCNNNNNNNGC 3 cut(s) 314, 392, 407
HpyF3I CTNAG 1 cut(s) 480
HpySE526I ACGT 1 cut(s) 279
Hsp92II CATG 1 cut(s) 471
HspAI GCGC 1 cut(s) 516
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
Lsp1109I GCAGC 3 cut(s) 162, 179, 211
LweI GCATC 2 cut(s) 240, 527
MaeII ACGT 1 cut(s) 279
MluCI AATT 3 cut(s) 107, 418, 522
MmeI TCCRAC 1 cut(s) 69
MroNI GCCGGC 1 cut(s) 227
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 3 cut(s) 182, 346, 458
MvaI CCWGG 3 cut(s) 182, 346, 458
MwoI GCNNNNNNNGC 3 cut(s) 314, 392, 407
NaeI GCCGGC 1 cut(s) 229
NcoI CCATGG 1 cut(s) 467
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 1 cut(s) 471
NlaIV GGNNCC 1 cut(s) 160
PcsI WCGNNNNNNNCGW 2 cut(s) 126, 276
PdiI GCCGGC 1 cut(s) 229
PfeI GAWTC 2 cut(s) 41, 138
PflFI GACNNNGTC 2 cut(s) 278, 287
PkrI GCNGC 8 cut(s) 103, 152, 194, 201, 319, 322, 343, 388
PpuMI RGGWCCY 2 cut(s) 159, 259
Psp5II RGGWCCY 2 cut(s) 159, 259
Psp6I CCWGG 3 cut(s) 180, 344, 456
PspGI CCWGG 3 cut(s) 180, 344, 456
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 3 cut(s) 159, 184, 259
PspPPI RGGWCCY 2 cut(s) 159, 259
PsyI GACNNNGTC 2 cut(s) 278, 287
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SalI GTCGAC 2 cut(s) 281, 299
SatI GCNGC 8 cut(s) 102, 151, 193, 200, 318, 321, 342, 387
Sau96I GGNCC 3 cut(s) 159, 184, 259
ScrFI CCNGG 3 cut(s) 182, 346, 458
SetI ASST 9 cut(s) 155, 204, 213, 222, 264, 282, 291, 433, 540
SfaNI GCATC 2 cut(s) 240, 527
SgrDI CGTCGACG 1 cut(s) 281
SinI GGWCC 2 cut(s) 159, 259
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 3 cut(s) 107, 418, 522
SsiI CCGC 6 cut(s) 102, 315, 318, 321, 342, 387
StyD4I CCNGG 3 cut(s) 180, 344, 456
StyI CCWWGG 2 cut(s) 390, 467
TaaI ACNGT 2 cut(s) 130, 452
TaiI ACGT 1 cut(s) 282
TaqI TCGA 3 cut(s) 282, 300, 376
TasI AATT 3 cut(s) 107, 418, 522
TauI GCSGC 5 cut(s) 104, 320, 323, 344, 389
TfiI GAWTC 2 cut(s) 41, 138
TseI GCWGC 3 cut(s) 150, 192, 199
TspDTI ATGAA 2 cut(s) 70, 438
TspGWI ACGGA 1 cut(s) 163
Tth111I GACNNNGTC 2 cut(s) 278, 287
VpaK11BI GGWCC 2 cut(s) 159, 259
XagI CCTNNNNNAGG 2 cut(s) 254, 335
XapI RAATTY 1 cut(s) 107
XmiI GTMKAC 2 cut(s) 282, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.