Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0005210

Physical Location & Seq

Genomic Coordinates Forward (+)

38475142 .. 38475522

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG321700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGCCTCCTCCCCCGACCACAACCACACCCTGAACGGCGATTCCAACACCCACGCCTCCAAAAAGCCCAAACTCTCCTTCATCACCCCCTCCGAAATCGCCGCCGAATTCTCCCACCACGACCCCACCGTCGCCCGAATCAACAACGGCAGCTTCGGGTCCTGCCCCGACTCCGTCCTCCAGGCCCAGTGCCGCTGGCAGCTCAAGTACCTCTCCCAGCCCGATCACTTCTACTTCAACCACCTCCAAGCCGGCATCATCCACTCCCGCACCCTCATCAAGGACCTCATCAACGCCGACCACGTCGACGAGGTCTCCATCGTCGACAACGCCACCACCGCCGCCGCCATCGTCCTCCAGCAGGCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

123

Amino Acids

13.52

Weight (kDa)

6.16

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005210)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390731 RchiOBHm_Chr5g0024111
rosa_multiflora	Rmu_sc0004031.1_g000007 Rmu_sc0013809.1_g000011 Rmu_sc0034927.1_g000001
rosa_rugosa	Rorug03G0108500 Rorug04G0346300 Rorug05G0081600 Rorug06G0311200 Rorug07G0213800
rosa_samantha	Rh1DG023500 Rh1DG057300 Rh2BG158100 Rh2BG387200 Rh2BG406800 Rh2BG533000 Rh2CG336200 Rh3BG347400 Rh3CG300700 Rh4CG141500 Rh4CG158300 Rh4DG375200 Rh5BG362200 Rh6CG135300 Rh6CG212500 Rh7CG199100 Rh7DG321700 Rh7DG335400 Rh7DG393400
rosa_wichuraiana	Rw4G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AccI	GTMKAC	2 cut(s)	306, 324
AciI	CCGC	6 cut(s)	102, 193, 268, 339, 342, 345
AcsI	RAATTY	1 cut(s)	107
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	280, 361
AgsI	TTSAA	1 cut(s)	238
AjiI	CACGTC	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	180
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
AluBI	AGCT	2 cut(s)	153, 202
AluI	AGCT	2 cut(s)	153, 202
Alw26I	GTCTC	1 cut(s)	319
AoxI	GGCC	2 cut(s)	3, 183
ApeKI	GCWGC	2 cut(s)	150, 199
ApoI	RAATTY	1 cut(s)	107
AspS9I	GGNCC	3 cut(s)	159, 184, 283
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	2 cut(s)	159, 283
BbvI	GCAGC	2 cut(s)	162, 211
BccI	CCATC	2 cut(s)	326, 356
BceAI	ACGGC	2 cut(s)	52, 163
BciT130I	CCWGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	319
BisI	GCNGC	6 cut(s)	102, 151, 193, 200, 342, 345
BlsI	GCNGC	6 cut(s)	103, 152, 194, 201, 343, 346
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	2 cut(s)	159, 283
BmgBI	CACGTC	1 cut(s)	304
BmgT120I	GGNCC	3 cut(s)	159, 184, 283
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	1 cut(s)	182
BmrI	ACTGGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	181
BpmI	CTGGAG	2 cut(s)	164, 341
BpuEI	CTTGAG	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 361
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	182
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	2 cut(s)	280, 361
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	2 cut(s)	162, 211
BseYI	CCCAGC	1 cut(s)	216
BshFI	GGCC	2 cut(s)	5, 185
BsiSI	CCGG	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	280, 361
BsmAI	GTCTC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	5, 185
Bso31I	GGTCTC	1 cut(s)	319
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	6 cut(s)	102, 193, 268, 339, 342, 345
BspANI	GGCC	2 cut(s)	5, 185
BspLI	GGNNCC	1 cut(s)	160
BspTNI	GGTCTC	1 cut(s)	319
BsrFI	RCCGGY	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	251
BssMI	GATC	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	130
BstC8I	GCNNGC	3 cut(s)	197, 253, 363
BstENI	CCTNNNNNAGG	2 cut(s)	278, 359
BstF5I	GGATG	1 cut(s)	258
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	162, 211
BsuRI	GGCC	2 cut(s)	5, 185
BtrI	CACGTC	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	258
BtsIMutI	CAGTG	1 cut(s)	194
Cac8I	GCNNGC	3 cut(s)	197, 253, 363
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	3 cut(s)	159, 184, 283
Csp6I	GTAC	1 cut(s)	208
CviJI	RGCY	8 cut(s)	5, 67, 153, 185, 202, 220, 251, 365
CviKI_1	RGCY	8 cut(s)	5, 67, 153, 185, 202, 220, 251, 365
CviQI	GTAC	1 cut(s)	208
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eco31I	GGTCTC	1 cut(s)	319
Eco47I	GGWCC	2 cut(s)	159, 283
EcoNI	CCTNNNNNAGG	2 cut(s)	278, 359
EcoO109I	RGGNCCY	2 cut(s)	159, 283
EcoRI	GAATTC	1 cut(s)	107
EcoRII	CCWGG	1 cut(s)	180
FauI	CCCGC	1 cut(s)	275
FblI	GTMKAC	2 cut(s)	306, 324
Fnu4HI	GCNGC	6 cut(s)	102, 151, 193, 200, 342, 345
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	6 cut(s)	102, 151, 193, 200, 342, 345
GluI	GCNGC	6 cut(s)	102, 151, 193, 200, 342, 345
GsaI	CCCAGC	1 cut(s)	220
GsuI	CTGGAG	2 cut(s)	164, 341
HaeIII	GGCC	2 cut(s)	5, 185
HapII	CCGG	1 cut(s)	252
HincII	GTYRAC	2 cut(s)	307, 325
HindII	GTYRAC	2 cut(s)	307, 325
HinfI	GANTC	3 cut(s)	41, 138, 170
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	2 cut(s)	307, 325
Hpy188I	TCNGA	1 cut(s)	94
Hpy8I	GTNNAC	2 cut(s)	307, 325
Hpy99I	CGWCG	4 cut(s)	134, 308, 311, 326
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	303
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpySE526I	ACGT	1 cut(s)	303
KroI	GCCGGC	1 cut(s)	251
KroNI	GCCGGC	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	223
LpnPI	CCDG	9 cut(s)	44, 167, 175, 181, 194, 200, 230, 265, 347
Lsp1109I	GCAGC	2 cut(s)	162, 211
LweI	GCATC	1 cut(s)	264
MaeII	ACGT	1 cut(s)	303
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MluCI	AATT	1 cut(s)	107
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	69
MroNI	GCCGGC	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	1 cut(s)	182
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	338
NaeI	GCCGGC	1 cut(s)	253
NdeII	GATC	1 cut(s)	223
NgoMIV	GCCGGC	1 cut(s)	251
NlaIV	GGNNCC	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 300
PdiI	GCCGGC	1 cut(s)	253
PfeI	GAWTC	2 cut(s)	41, 138
PflFI	GACNNNGTC	3 cut(s)	173, 302, 311
PkrI	GCNGC	6 cut(s)	103, 152, 194, 201, 343, 346
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PpuMI	RGGWCCY	2 cut(s)	159, 283
Psp5II	RGGWCCY	2 cut(s)	159, 283
Psp6I	CCWGG	1 cut(s)	180
PspFI	CCCAGC	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	3 cut(s)	159, 184, 283
PspPPI	RGGWCCY	2 cut(s)	159, 283
PsyI	GACNNNGTC	3 cut(s)	173, 302, 311
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SalI	GTCGAC	2 cut(s)	305, 323
SatI	GCNGC	6 cut(s)	102, 151, 193, 200, 342, 345
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	3 cut(s)	159, 184, 283
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	182
SetI	ASST	7 cut(s)	155, 204, 213, 246, 288, 306, 315
SfaNI	GCATC	1 cut(s)	264
SgrDI	CGTCGACG	1 cut(s)	305
SinI	GGWCC	2 cut(s)	159, 283
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	107
SsiI	CCGC	6 cut(s)	102, 193, 268, 339, 342, 345
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	2 cut(s)	306, 324
TasI	AATT	1 cut(s)	107
TauI	GCSGC	4 cut(s)	104, 195, 344, 347
TfiI	GAWTC	2 cut(s)	41, 138
TscAI	CASTG	1 cut(s)	194
TseI	GCWGC	2 cut(s)	150, 199
TspDTI	ATGAA	1 cut(s)	70
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	1 cut(s)	194
Tth111I	GACNNNGTC	3 cut(s)	173, 302, 311
VpaK11BI	GGWCC	2 cut(s)	159, 283
XagI	CCTNNNNNAGG	2 cut(s)	278, 359
XapI	RAATTY	1 cut(s)	107
XmiI	GTMKAC	2 cut(s)	306, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.