Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005210

Physical Location & Seq

Genomic Coordinates Reverse (-)

17098882 .. 17099839

Gene Structure 958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG135300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 592 bp

ATGGCCTCCTCCCCCGACCACAACCACACCCTGAACGGCGATTCCAACACCCACGCCTCCAAAAAGCCCAAACTCTCCTTCATCACCCCCTCCGAAATCGCCGCCGAATTCTCCCACCACGACCCCACCGTCGCCCGAATCAACAACGGCAGCTTCGGGTCCTGCCCCGACTCCGTCCTCCAGGCCCAGCGCCGCTGGCAGCTCAAGTACCTCCCCCAGCCCGATCACTTCTACTTCAACCACCTCCAAGCCGGCATCATCCACTCCCGCACCCTCATCAAGGACCTCATCAACGCCGACCACGTCGACGAGGTCTCCATCGTCGACAACGCCACCACCGCCGCCGCCATCGTCCTCCAGCAGGCCGCCTGGGGCTTCTCCGAGAGCAAATTCGAGCAGGGCGACAAAGGGAAGGCTAATGCTCCGCATTTGACGGGTTTCTTTCTTAAGTTGTTTGTATGGATTGTTGAGGTCCCCATTATTGGTTCTTTGATAATTTCAGTGTTGAAGAAGCAGAATAAGATGACTCAGTTATTGAGGAACACTGTGATTCCAGAAGCACCCATGTTCAAACCTGAATTTCCTCCTCAAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

197

Amino Acids

21.92

Weight (kDa)

7.17

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005210)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390731 RchiOBHm_Chr5g0024111
rosa_multiflora	Rmu_sc0004031.1_g000007 Rmu_sc0013809.1_g000011 Rmu_sc0034927.1_g000001
rosa_rugosa	Rorug03G0108500 Rorug04G0346300 Rorug05G0081600 Rorug06G0311200 Rorug07G0213800
rosa_samantha	Rh1DG023500 Rh1DG057300 Rh2BG158100 Rh2BG387200 Rh2BG406800 Rh2BG533000 Rh2CG336200 Rh3BG347400 Rh3CG300700 Rh4CG141500 Rh4CG158300 Rh4DG375200 Rh5BG362200 Rh6CG135300 Rh6CG212500 Rh7CG199100 Rh7DG321700 Rh7DG335400 Rh7DG393400
rosa_wichuraiana	Rw4G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AccI	GTMKAC	2 cut(s)	306, 324
AciI	CCGC	8 cut(s)	102, 193, 268, 339, 342, 345, 366, 425
AcsI	RAATTY	3 cut(s)	107, 389, 578
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	3 cut(s)	280, 361, 482
AflII	CTTAAG	1 cut(s)	446
AgsI	TTSAA	3 cut(s)	238, 508, 571
AjiI	CACGTC	1 cut(s)	304
AjnI	CCWGG	2 cut(s)	180, 368
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
AluBI	AGCT	2 cut(s)	153, 202
AluI	AGCT	2 cut(s)	153, 202
Alw26I	GTCTC	1 cut(s)	319
AoxI	GGCC	3 cut(s)	3, 183, 363
ApeKI	GCWGC	2 cut(s)	150, 199
ApoI	RAATTY	3 cut(s)	107, 389, 578
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	4 cut(s)	159, 184, 283, 472
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	3 cut(s)	159, 283, 472
BbvI	GCAGC	2 cut(s)	162, 211
BccI	CCATC	2 cut(s)	326, 356
BceAI	ACGGC	2 cut(s)	52, 163
BciT130I	CCWGG	2 cut(s)	182, 370
BcoDI	GTCTC	1 cut(s)	319
BfoI	RGCGCY	1 cut(s)	193
BfrI	CTTAAG	1 cut(s)	446
BisI	GCNGC	7 cut(s)	102, 151, 193, 200, 342, 345, 366
BlsI	GCNGC	7 cut(s)	103, 152, 194, 201, 343, 346, 367
Bme1390I	CCNGG	2 cut(s)	182, 370
Bme18I	GGWCC	3 cut(s)	159, 283, 472
BmgBI	CACGTC	1 cut(s)	304
BmgT120I	GGNCC	4 cut(s)	159, 184, 283, 472
BmiI	GGNNCC	2 cut(s)	160, 474
BmrFI	CCNGG	2 cut(s)	182, 370
BmsI	GCATC	1 cut(s)	264
BpmI	CTGGAG	2 cut(s)	164, 341
BpuEI	CTTGAG	2 cut(s)	188, 573
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 361, 482
Bse118I	RCCGGY	1 cut(s)	251
BseBI	CCWGG	2 cut(s)	182, 370
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	3 cut(s)	280, 361, 482
BseMII	CTCAG	1 cut(s)	542
BseRI	GAGGAG	1 cut(s)	576
BseXI	GCAGC	2 cut(s)	162, 211
BseYI	CCCAGC	2 cut(s)	186, 216
BshFI	GGCC	3 cut(s)	5, 185, 365
BsiSI	CCGG	1 cut(s)	252
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	3 cut(s)	280, 361, 482
BsmAI	GTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	458
BsnI	GGCC	3 cut(s)	5, 185, 365
Bso31I	GGTCTC	1 cut(s)	319
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	8 cut(s)	102, 193, 268, 339, 342, 345, 366, 425
BspANI	GGCC	3 cut(s)	5, 185, 365
BspCNI	CTCAG	1 cut(s)	541
BspLI	GGNNCC	2 cut(s)	160, 474
BspTI	CTTAAG	1 cut(s)	446
BspTNI	GGTCTC	1 cut(s)	319
BsrFI	RCCGGY	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	1 cut(s)	223
Bst2UI	CCWGG	2 cut(s)	182, 370
Bst4CI	ACNGT	2 cut(s)	130, 547
BstAFI	CTTAAG	1 cut(s)	446
BstC8I	GCNNGC	3 cut(s)	197, 253, 363
BstDEI	CTNAG	1 cut(s)	528
BstENI	CCTNNNNNAGG	2 cut(s)	278, 359
BstF5I	GGATG	1 cut(s)	258
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 338
BstNI	CCWGG	2 cut(s)	182, 370
BstSCI	CCNGG	2 cut(s)	180, 368
BstV1I	GCAGC	2 cut(s)	162, 211
BsuRI	GGCC	3 cut(s)	5, 185, 365
BtrI	CACGTC	1 cut(s)	304
BtsCI	GGATG	1 cut(s)	258
BtsIMutI	CAGTG	2 cut(s)	507, 543
Cac8I	GCNNGC	3 cut(s)	197, 253, 363
CfoI	GCGC	1 cut(s)	192
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	4 cut(s)	159, 184, 283, 472
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	1 cut(s)	565
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	528
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eco31I	GGTCTC	1 cut(s)	319
Eco47I	GGWCC	3 cut(s)	159, 283, 472
EcoNI	CCTNNNNNAGG	2 cut(s)	278, 359
EcoO109I	RGGNCCY	3 cut(s)	159, 283, 472
EcoRI	GAATTC	1 cut(s)	107
EcoRII	CCWGG	2 cut(s)	180, 368
FaeI	CATG	1 cut(s)	568
FaiI	YATR	2 cut(s)	460, 566
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	1 cut(s)	564
FauI	CCCGC	1 cut(s)	275
FblI	GTMKAC	2 cut(s)	306, 324
Fnu4HI	GCNGC	7 cut(s)	102, 151, 193, 200, 342, 345, 366
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	7 cut(s)	102, 151, 193, 200, 342, 345, 366
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	7 cut(s)	102, 151, 193, 200, 342, 345, 366
GsaI	CCCAGC	2 cut(s)	190, 220
GsuI	CTGGAG	2 cut(s)	164, 341
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	3 cut(s)	5, 185, 365
HapII	CCGG	1 cut(s)	252
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	568
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HincII	GTYRAC	2 cut(s)	307, 325
HindII	GTYRAC	2 cut(s)	307, 325
HinfI	GANTC	5 cut(s)	41, 138, 170, 526, 550
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	2 cut(s)	307, 325
Hpy188I	TCNGA	2 cut(s)	94, 382
Hpy188III	TCNNGA	1 cut(s)	554
Hpy8I	GTNNAC	2 cut(s)	307, 325
Hpy99I	CGWCG	4 cut(s)	134, 308, 311, 326
HpyAV	CCTTC	2 cut(s)	88, 406
HpyCH4III	ACNGT	2 cut(s)	130, 547
HpyCH4IV	ACGT	1 cut(s)	303
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 338
HpyF3I	CTNAG	1 cut(s)	528
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	1 cut(s)	568
HspAI	GCGC	1 cut(s)	190
KroI	GCCGGC	1 cut(s)	251
KroNI	GCCGGC	1 cut(s)	253
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	427
Lsp1109I	GCAGC	2 cut(s)	162, 211
LweI	GCATC	1 cut(s)	264
MaeII	ACGT	1 cut(s)	303
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	1 cut(s)	520
MluCI	AATT	4 cut(s)	107, 389, 495, 578
MlyI	GAGTC	2 cut(s)	164, 520
MmeI	TCCRAC	1 cut(s)	69
MroNI	GCCGGC	1 cut(s)	251
MseI	TTAA	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	195
MspCI	CTTAAG	1 cut(s)	446
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	2 cut(s)	182, 370
MvaI	CCWGG	2 cut(s)	182, 370
MwoI	GCNNNNNNNGC	2 cut(s)	196, 338
NaeI	GCCGGC	1 cut(s)	253
NdeII	GATC	1 cut(s)	223
NgoMIV	GCCGGC	1 cut(s)	251
NlaIII	CATG	1 cut(s)	568
NlaIV	GGNNCC	2 cut(s)	160, 474
PcsI	WCGNNNNNNNCGW	3 cut(s)	126, 300, 399
PdiI	GCCGGC	1 cut(s)	253
PfeI	GAWTC	3 cut(s)	41, 138, 550
PflFI	GACNNNGTC	3 cut(s)	173, 302, 311
PkrI	GCNGC	7 cut(s)	103, 152, 194, 201, 343, 346, 367
PleI	GAGTC	2 cut(s)	164, 520
PpsI	GAGTC	2 cut(s)	164, 520
PpuMI	RGGWCCY	3 cut(s)	159, 283, 472
Psp5II	RGGWCCY	3 cut(s)	159, 283, 472
Psp6I	CCWGG	2 cut(s)	180, 368
PspFI	CCCAGC	2 cut(s)	186, 216
PspGI	CCWGG	2 cut(s)	180, 368
PspN4I	GGNNCC	2 cut(s)	160, 474
PspPI	GGNCC	4 cut(s)	159, 184, 283, 472
PspPPI	RGGWCCY	3 cut(s)	159, 283, 472
PsyI	GACNNNGTC	3 cut(s)	173, 302, 311
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SalI	GTCGAC	2 cut(s)	305, 323
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	7 cut(s)	102, 151, 193, 200, 342, 345, 366
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	4 cut(s)	159, 184, 283, 472
SchI	GAGTC	2 cut(s)	164, 520
ScrFI	CCNGG	2 cut(s)	182, 370
SetI	ASST	9 cut(s)	155, 204, 213, 246, 288, 306, 315, 474, 577
SfaNI	GCATC	1 cut(s)	264
SgrDI	CGTCGACG	1 cut(s)	305
SinI	GGWCC	3 cut(s)	159, 283, 472
SmlI	CTYRAG	3 cut(s)	203, 446, 588
SmoI	CTYRAG	3 cut(s)	203, 446, 588
Sse9I	AATT	4 cut(s)	107, 389, 495, 578
SsiI	CCGC	8 cut(s)	102, 193, 268, 339, 342, 345, 366, 425
StyD4I	CCNGG	2 cut(s)	180, 368
TaaI	ACNGT	2 cut(s)	130, 547
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	3 cut(s)	306, 324, 393
TasI	AATT	4 cut(s)	107, 389, 495, 578
TauI	GCSGC	5 cut(s)	104, 195, 344, 347, 368
TfiI	GAWTC	3 cut(s)	41, 138, 550
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	2 cut(s)	507, 550
TseI	GCWGC	2 cut(s)	150, 199
TspDTI	ATGAA	1 cut(s)	70
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	2 cut(s)	507, 550
Tth111I	GACNNNGTC	3 cut(s)	173, 302, 311
Vha464I	CTTAAG	1 cut(s)	446
VpaK11BI	GGWCC	3 cut(s)	159, 283, 472
XagI	CCTNNNNNAGG	2 cut(s)	278, 359
XapI	RAATTY	3 cut(s)	107, 389, 578
XmiI	GTMKAC	2 cut(s)	306, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.