Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0005210

Physical Location & Seq

Genomic Coordinates Reverse (-)

33667537 .. 33667944

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G014540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCCTCCTCCCCCGACCACAACCACACCCTGAACGGCGATTCCAACACCCACGCCTCCAAAAAGCCCAAACTCTCCTTCATCACCCCCTCCGAAATCGCCGCCGAATTCTCCCACCACGACCCCACCGTCGCCCGAATCAACAACGGCAGCTTCGGGTTCTGCCCTGACTCCGTCCTCCAGGCCCAGCGCCCCTGGCAGCTCAAGTACCTCTCCCAGCCCGATCACTTCTACTTCAACCACCTCCAAGCCGGGCATCATCCACTCCCGCACCCTCATCAAGGACCTCATCAACGCCGACCACGTCGACGAGGTCTCCAACACGGTCAACGCCACCACCGCCACCTCCATCGTCCTCCAGCAGGCCGCCTGGGGCTTCTCCGAGAGCAAGTTCGAGCAGGGACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

135

Amino Acids

15.39

Weight (kDa)

11.1

Isoelectric Point (pI)

53.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005210)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390731 RchiOBHm_Chr5g0024111
rosa_multiflora	Rmu_sc0004031.1_g000007 Rmu_sc0013809.1_g000011 Rmu_sc0034927.1_g000001
rosa_rugosa	Rorug03G0108500 Rorug04G0346300 Rorug05G0081600 Rorug06G0311200 Rorug07G0213800
rosa_samantha	Rh1DG023500 Rh1DG057300 Rh2BG158100 Rh2BG387200 Rh2BG406800 Rh2BG533000 Rh2CG336200 Rh3BG347400 Rh3CG300700 Rh4CG141500 Rh4CG158300 Rh4DG375200 Rh5BG362200 Rh6CG135300 Rh6CG212500 Rh7CG199100 Rh7DG321700 Rh7DG335400 Rh7DG393400
rosa_wichuraiana	Rw4G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	128
AccI	GTMKAC	1 cut(s)	307
AciI	CCGC	4 cut(s)	102, 269, 340, 367
AcsI	RAATTY	1 cut(s)	107
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	2 cut(s)	281, 362
AgsI	TTSAA	1 cut(s)	238
AjiI	CACGTC	1 cut(s)	305
AjnI	CCWGG	3 cut(s)	180, 194, 369
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
AluBI	AGCT	2 cut(s)	153, 202
AluI	AGCT	2 cut(s)	153, 202
Alw26I	GTCTC	1 cut(s)	320
AoxI	GGCC	3 cut(s)	3, 183, 364
ApeKI	GCWGC	2 cut(s)	150, 199
ApoI	RAATTY	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	2 cut(s)	184, 284
AsuC2I	CCSGG	1 cut(s)	253
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	162, 211
BccI	CCATC	1 cut(s)	357
BceAI	ACGGC	2 cut(s)	52, 163
BciT130I	CCWGG	3 cut(s)	182, 196, 371
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	1 cut(s)	320
BfoI	RGCGCY	1 cut(s)	193
BisI	GCNGC	4 cut(s)	102, 151, 200, 367
BlsI	GCNGC	4 cut(s)	103, 152, 201, 368
Bme1390I	CCNGG	4 cut(s)	182, 196, 253, 371
Bme18I	GGWCC	1 cut(s)	284
BmgBI	CACGTC	1 cut(s)	305
BmgT120I	GGNCC	2 cut(s)	184, 284
BmrFI	CCNGG	4 cut(s)	182, 196, 253, 371
BmsI	GCATC	1 cut(s)	265
BpmI	CTGGAG	2 cut(s)	164, 342
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	2 cut(s)	194, 370
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 362
BseBI	CCWGG	3 cut(s)	182, 196, 371
BseDI	CCNNGG	2 cut(s)	194, 370
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	281, 362
BseXI	GCAGC	2 cut(s)	162, 211
BseYI	CCCAGC	2 cut(s)	186, 216
BshFI	GGCC	3 cut(s)	5, 185, 366
BsiSI	CCGG	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	281, 362
BsmAI	GTCTC	1 cut(s)	320
BsnI	GGCC	3 cut(s)	5, 185, 366
Bso31I	GGTCTC	1 cut(s)	320
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	4 cut(s)	102, 269, 340, 367
BspANI	GGCC	3 cut(s)	5, 185, 366
BspTNI	GGTCTC	1 cut(s)	320
BssECI	CCNNGG	2 cut(s)	194, 370
BssMI	GATC	1 cut(s)	223
Bst2UI	CCWGG	3 cut(s)	182, 196, 371
Bst4CI	ACNGT	2 cut(s)	130, 326
BstC8I	GCNNGC	1 cut(s)	364
BstENI	CCTNNNNNAGG	2 cut(s)	279, 360
BstF5I	GGATG	1 cut(s)	259
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 339
BstNI	CCWGG	3 cut(s)	182, 196, 371
BstSCI	CCNGG	4 cut(s)	180, 194, 251, 369
BstV1I	GCAGC	2 cut(s)	162, 211
BsuRI	GGCC	3 cut(s)	5, 185, 366
BtrI	CACGTC	1 cut(s)	305
BtsCI	GGATG	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	364
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	2 cut(s)	184, 284
Csp6I	GTAC	1 cut(s)	208
CviJI	RGCY	9 cut(s)	5, 67, 153, 185, 202, 220, 251, 366, 376
CviKI_1	RGCY	9 cut(s)	5, 67, 153, 185, 202, 220, 251, 366, 376
CviQI	GTAC	1 cut(s)	208
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
DrdI	GACNNNNNNGTC	1 cut(s)	128
DseDI	GACNNNNNNGTC	1 cut(s)	128
Eco31I	GGTCTC	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	284
EcoNI	CCTNNNNNAGG	2 cut(s)	279, 360
EcoO109I	RGGNCCY	1 cut(s)	284
EcoRI	GAATTC	1 cut(s)	107
EcoRII	CCWGG	3 cut(s)	180, 194, 369
FauI	CCCGC	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	307
Fnu4HI	GCNGC	4 cut(s)	102, 151, 200, 367
FokI	GGATG	1 cut(s)	246
Fsp4HI	GCNGC	4 cut(s)	102, 151, 200, 367
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	4 cut(s)	102, 151, 200, 367
GsaI	CCCAGC	2 cut(s)	190, 220
GsuI	CTGGAG	2 cut(s)	164, 342
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	3 cut(s)	5, 185, 366
HapII	CCGG	1 cut(s)	252
HhaI	GCGC	1 cut(s)	192
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HincII	GTYRAC	2 cut(s)	308, 329
HindII	GTYRAC	2 cut(s)	308, 329
HinfI	GANTC	3 cut(s)	41, 138, 170
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	2 cut(s)	308, 329
Hpy188I	TCNGA	2 cut(s)	94, 383
Hpy8I	GTNNAC	2 cut(s)	308, 329
Hpy99I	CGWCG	3 cut(s)	134, 309, 312
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	2 cut(s)	130, 326
HpyCH4IV	ACGT	2 cut(s)	304, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 339
HpySE526I	ACGT	2 cut(s)	304, 404
HspAI	GCGC	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	223
Lsp1109I	GCAGC	2 cut(s)	162, 211
LweI	GCATC	1 cut(s)	265
MaeII	ACGT	2 cut(s)	304, 404
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MluCI	AATT	1 cut(s)	107
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	2 cut(s)	69, 343
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	4 cut(s)	182, 196, 253, 371
MvaI	CCWGG	3 cut(s)	182, 196, 371
MwoI	GCNNNNNNNGC	2 cut(s)	196, 339
NciI	CCSGG	1 cut(s)	253
NdeII	GATC	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	2 cut(s)	126, 301
PfeI	GAWTC	2 cut(s)	41, 138
PflFI	GACNNNGTC	3 cut(s)	173, 303, 312
PkrI	GCNGC	4 cut(s)	103, 152, 201, 368
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PpuMI	RGGWCCY	1 cut(s)	284
Psp5II	RGGWCCY	1 cut(s)	284
Psp6I	CCWGG	3 cut(s)	180, 194, 369
PspFI	CCCAGC	2 cut(s)	186, 216
PspGI	CCWGG	3 cut(s)	180, 194, 369
PspPI	GGNCC	2 cut(s)	184, 284
PspPPI	RGGWCCY	1 cut(s)	284
PsyI	GACNNNGTC	3 cut(s)	173, 303, 312
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SalI	GTCGAC	1 cut(s)	306
SatI	GCNGC	4 cut(s)	102, 151, 200, 367
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	2 cut(s)	184, 284
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	4 cut(s)	182, 196, 253, 371
SetI	ASST	9 cut(s)	155, 204, 213, 246, 289, 307, 316, 348, 407
SfaNI	GCATC	1 cut(s)	265
SgrDI	CGTCGACG	1 cut(s)	306
SinI	GGWCC	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	107
SsiI	CCGC	4 cut(s)	102, 269, 340, 367
StyD4I	CCNGG	4 cut(s)	180, 194, 251, 369
TaaI	ACNGT	2 cut(s)	130, 326
TaiI	ACGT	2 cut(s)	307, 407
TaqI	TCGA	2 cut(s)	307, 394
TasI	AATT	1 cut(s)	107
TauI	GCSGC	2 cut(s)	104, 369
TfiI	GAWTC	2 cut(s)	41, 138
TseI	GCWGC	2 cut(s)	150, 199
TspDTI	ATGAA	1 cut(s)	70
TspGWI	ACGGA	1 cut(s)	163
Tth111I	GACNNNGTC	3 cut(s)	173, 303, 312
VpaK11BI	GGWCC	1 cut(s)	284
XagI	CCTNNNNNAGG	2 cut(s)	279, 360
XapI	RAATTY	1 cut(s)	107
XmiI	GTMKAC	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.