Rh4CG158300

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0005210
Physical Location & Seq
Reverse (-)
34802354 .. 34802749
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG158300.1

Sequence Viewer

Length: 396 bp
ATGGCCTCCTCCCCCGACCACAACCACACCCTGAACGGCGATTCCAACACCCACGCCTCCAAAAAGCCCAAACTCTCCTTCATCACCCCCTCCGAAATCGCCGCCGAATTCTCCCACCACGACCCCACCGTCGCCCGAATCAACAACGACAGCTTCGGGTCCTGCCCCGACTACGTCCTCCAGGCCCAGCGCCGCTGGCAGCTCAAGTACCTCTCCCAGCCCGATCACTTCTACTTCAACCACCTCCAAGCCGGCATCCTCCACTCCCGCACCCTCATCAAGGACCTCATCAACGCCGACCACGTCCACGAGGTCTCCATCGTTGACAACGCCACCACCGCCGCCGCCATCGTCCTCCAGCAAGCCGCCTGGGGCTTCTCCGAGAGCAAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

131

Amino Acids

14.64

Weight (kDa)

6.33

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
AciI CCGC 7 cut(s) 102, 193, 268, 339, 342, 345, 366
AcsI RAATTY 1 cut(s) 107
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 1 cut(s) 238
AjiI CACGTC 1 cut(s) 304
AjnI CCWGG 2 cut(s) 180, 368
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
AloI GAACNNNNNNTCC 2 cut(s) 26, 58
AluBI AGCT 2 cut(s) 153, 202
AluI AGCT 2 cut(s) 153, 202
Alw26I GTCTC 1 cut(s) 319
AoxI GGCC 2 cut(s) 3, 183
ApeKI GCWGC 1 cut(s) 199
ApoI RAATTY 1 cut(s) 107
AspLEI GCGC 1 cut(s) 192
AspS9I GGNCC 3 cut(s) 159, 184, 283
AsuHPI GGTGA 1 cut(s) 76
AvaII GGWCC 2 cut(s) 159, 283
BauI CACGAG 1 cut(s) 308
BbvI GCAGC 1 cut(s) 211
BccI CCATC 2 cut(s) 326, 356
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 2 cut(s) 182, 370
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 1 cut(s) 394
BfoI RGCGCY 1 cut(s) 193
BisI GCNGC 6 cut(s) 102, 193, 200, 342, 345, 366
BlsI GCNGC 6 cut(s) 103, 194, 201, 343, 346, 367
Bme1390I CCNGG 2 cut(s) 182, 370
Bme18I GGWCC 2 cut(s) 159, 283
BmgBI CACGTC 1 cut(s) 304
BmgT120I GGNCC 3 cut(s) 159, 184, 283
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 2 cut(s) 182, 370
BmsI GCATC 1 cut(s) 264
BpmI CTGGAG 2 cut(s) 164, 341
BpuEI CTTGAG 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 369
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse118I RCCGGY 1 cut(s) 251
BseBI CCWGG 2 cut(s) 182, 370
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 280
BseXI GCAGC 1 cut(s) 211
BseYI CCCAGC 2 cut(s) 186, 216
BshFI GGCC 2 cut(s) 5, 185
BsiSI CCGG 1 cut(s) 252
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 319
BsnI GGCC 2 cut(s) 5, 185
Bso31I GGTCTC 1 cut(s) 319
Bsp143I GATC 1 cut(s) 223
BspACI CCGC 7 cut(s) 102, 193, 268, 339, 342, 345, 366
BspANI GGCC 2 cut(s) 5, 185
BspLI GGNNCC 1 cut(s) 160
BspTNI GGTCTC 1 cut(s) 319
BsrFI RCCGGY 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 369
BssMI GATC 1 cut(s) 223
BssSI CACGAG 1 cut(s) 308
Bst2BI CACGAG 1 cut(s) 308
Bst2UI CCWGG 2 cut(s) 182, 370
Bst4CI ACNGT 1 cut(s) 130
BstC8I GCNNGC 3 cut(s) 197, 253, 363
BstENI CCTNNNNNAGG 1 cut(s) 278
BstF5I GGATG 1 cut(s) 255
BstH2I RGCGCY 1 cut(s) 193
BstHHI GCGC 1 cut(s) 192
BstKTI GATC 1 cut(s) 226
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 2 cut(s) 196, 338
BstNI CCWGG 2 cut(s) 182, 370
BstSCI CCNGG 2 cut(s) 180, 368
BstV1I GCAGC 1 cut(s) 211
BsuRI GGCC 2 cut(s) 5, 185
BtrI CACGTC 1 cut(s) 304
BtsCI GGATG 1 cut(s) 255
Cac8I GCNNGC 3 cut(s) 197, 253, 363
CfoI GCGC 1 cut(s) 192
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 3 cut(s) 159, 184, 283
Csp6I GTAC 1 cut(s) 208
CviJI RGCY 9 cut(s) 5, 67, 153, 185, 202, 220, 251, 365, 375
CviKI_1 RGCY 9 cut(s) 5, 67, 153, 185, 202, 220, 251, 365, 375
CviQI GTAC 1 cut(s) 208
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
Eco31I GGTCTC 1 cut(s) 319
Eco47I GGWCC 2 cut(s) 159, 283
EcoNI CCTNNNNNAGG 1 cut(s) 278
EcoO109I RGGNCCY 2 cut(s) 159, 283
EcoRI GAATTC 1 cut(s) 107
EcoRII CCWGG 2 cut(s) 180, 368
FauI CCCGC 1 cut(s) 275
Fnu4HI GCNGC 6 cut(s) 102, 193, 200, 342, 345, 366
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 6 cut(s) 102, 193, 200, 342, 345, 366
FspBI CTAG 1 cut(s) 394
GlaI GCGC 1 cut(s) 191
GluI GCNGC 6 cut(s) 102, 193, 200, 342, 345, 366
GsaI CCCAGC 2 cut(s) 190, 220
GsuI CTGGAG 2 cut(s) 164, 341
HaeII RGCGCY 1 cut(s) 193
HaeIII GGCC 2 cut(s) 5, 185
HapII CCGG 1 cut(s) 252
HhaI GCGC 1 cut(s) 192
Hin6I GCGC 1 cut(s) 190
HinP1I GCGC 1 cut(s) 190
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 2 cut(s) 41, 138
HpaII CCGG 1 cut(s) 252
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 2 cut(s) 307, 325
Hpy188I TCNGA 2 cut(s) 94, 382
Hpy8I GTNNAC 2 cut(s) 307, 325
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 2 cut(s) 174, 303
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 338
HpySE526I ACGT 2 cut(s) 174, 303
HspAI GCGC 1 cut(s) 190
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Kzo9I GATC 1 cut(s) 223
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 1 cut(s) 264
MaeI CTAG 1 cut(s) 394
MaeII ACGT 2 cut(s) 174, 303
MalI GATC 1 cut(s) 225
MboI GATC 1 cut(s) 223
MluCI AATT 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 69
MroNI GCCGGC 1 cut(s) 251
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 1 cut(s) 252
MspR9I CCNGG 2 cut(s) 182, 370
MvaI CCWGG 2 cut(s) 182, 370
MwoI GCNNNNNNNGC 2 cut(s) 196, 338
NaeI GCCGGC 1 cut(s) 253
NdeII GATC 1 cut(s) 223
NgoMIV GCCGGC 1 cut(s) 251
NlaIV GGNNCC 1 cut(s) 160
PcsI WCGNNNNNNNCGW 2 cut(s) 126, 300
PdiI GCCGGC 1 cut(s) 253
PfeI GAWTC 2 cut(s) 41, 138
PflFI GACNNNGTC 2 cut(s) 173, 302
PkrI GCNGC 6 cut(s) 103, 194, 201, 343, 346, 367
PpuMI RGGWCCY 2 cut(s) 159, 283
Psp5II RGGWCCY 2 cut(s) 159, 283
Psp6I CCWGG 2 cut(s) 180, 368
PspFI CCCAGC 2 cut(s) 186, 216
PspGI CCWGG 2 cut(s) 180, 368
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 3 cut(s) 159, 184, 283
PspPPI RGGWCCY 2 cut(s) 159, 283
PsyI GACNNNGTC 2 cut(s) 173, 302
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SatI GCNGC 6 cut(s) 102, 193, 200, 342, 345, 366
Sau3AI GATC 1 cut(s) 223
Sau96I GGNCC 3 cut(s) 159, 184, 283
ScrFI CCNGG 2 cut(s) 182, 370
SetI ASST 8 cut(s) 155, 177, 204, 213, 246, 288, 306, 315
SfaNI GCATC 1 cut(s) 264
SinI GGWCC 2 cut(s) 159, 283
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
Sse9I AATT 1 cut(s) 107
SsiI CCGC 7 cut(s) 102, 193, 268, 339, 342, 345, 366
SspMI CTAG 1 cut(s) 394
StyD4I CCNGG 2 cut(s) 180, 368
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 2 cut(s) 177, 306
TasI AATT 1 cut(s) 107
TauI GCSGC 5 cut(s) 104, 195, 344, 347, 368
TfiI GAWTC 2 cut(s) 41, 138
TseI GCWGC 1 cut(s) 199
TspDTI ATGAA 1 cut(s) 70
Tth111I GACNNNGTC 2 cut(s) 173, 302
VpaK11BI GGWCC 2 cut(s) 159, 283
XagI CCTNNNNNAGG 1 cut(s) 278
XapI RAATTY 1 cut(s) 107
XspI CTAG 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.