Rh2BG406800

Aminotransferase class-V

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005210
Physical Location & Seq
Forward (+)
57685092 .. 57685745
654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG406800.1

Sequence Viewer

Length: 654 bp
ATGGCCCCCTCCCCCGACCACAACCACACCCTGAACGGCGATTCCAAAAAGCCCAAACTCTCCTTCATCACCCCCTCCGAAATCGCCTCCGAATTCTCCCACCACGACCCCACCGTCGCCCGAATCAACAACGGCAGCTTCGGGTCCTGCCCCGACTCCGTCCTCCAGGCCCAGCGCCGCTGGCAGCTCAAGTACCTCTCCCAGCCCGATCACTTCTACTTCAACCACCTCCAAGCCGGCATCCTCCACTCCCGCACCCTCATCAAGGACCTCATCAACGCCGACCACGTCGACAACGCCACCACCGCCGCCGCCATCGTCCTCCAGCAGGCCGCCTGGGGCTTCTCCGAGAGCAAGTTCGAGCAGGGCGACGCCGTCGTCATGCTCCACTACGCCTACGGCCCCGTCAAGAAGTCGATTGAGGCCTACATCACTCGCGCCGGCGGGCACATCATTGAGGTACCCTTGCCGTTTCCTTTGAATTCCAACGATGAGATTGTAACCGAGTTTAAGAAGGTTTTGGAGAAGGGGAAGGCTAATGGTAGGAGGGTTAGGCTACATTCCTTCTCCCGGTTGCCACGTCAACTCCGTCAAGTGGAACCACACCAGTTAGTCACTCTCACTCTCACTCTTGTTCTTCATTTGTTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 map00270
Pfam Domains
Protein Families
Aminotran_5

Protein Analysis

217

Amino Acids

24.34

Weight (kDa)

8.99

Isoelectric Point (pI)

53.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 113, 377
Acc65I GGTACC 1 cut(s) 460
AccB1I GGYRCC 1 cut(s) 460
AccI GTMKAC 1 cut(s) 291
AccII CGCG 1 cut(s) 438
AciI CCGC 7 cut(s) 178, 253, 306, 309, 312, 333, 444
AcsI RAATTY 2 cut(s) 92, 481
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 2 cut(s) 194, 462
AfiI CCNNNNNNNGG 4 cut(s) 265, 328, 570, 595
AgsI TTSAA 2 cut(s) 223, 481
AjiI CACGTC 2 cut(s) 289, 581
AjnI CCWGG 2 cut(s) 165, 335
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AloI GAACNNNNNNTCC 2 cut(s) 26, 58
AluBI AGCT 2 cut(s) 138, 187
AluI AGCT 2 cut(s) 138, 187
AoxI GGCC 5 cut(s) 3, 168, 330, 400, 423
ApeKI GCWGC 2 cut(s) 135, 184
ApoI RAATTY 2 cut(s) 92, 481
Asp718I GGTACC 1 cut(s) 460
AspLEI GCGC 2 cut(s) 177, 440
AspS9I GGNCC 5 cut(s) 4, 144, 169, 268, 401
AsuC2I CCSGG 1 cut(s) 571
AsuHPI GGTGA 1 cut(s) 61
AvaII GGWCC 2 cut(s) 144, 268
BaeGI GKGCMC 1 cut(s) 450
BanI GGYRCC 1 cut(s) 460
BbvI GCAGC 2 cut(s) 147, 196
BccI CCATC 1 cut(s) 323
BceAI ACGGC 5 cut(s) 52, 148, 359, 415, 454
BciT130I CCWGG 2 cut(s) 167, 337
BcnI CCSGG 1 cut(s) 571
BfoI RGCGCY 1 cut(s) 178
BisI GCNGC 6 cut(s) 136, 178, 185, 309, 312, 333
BlsI GCNGC 6 cut(s) 137, 179, 186, 310, 313, 334
Bme1390I CCNGG 3 cut(s) 167, 337, 571
Bme18I GGWCC 2 cut(s) 144, 268
BmgBI CACGTC 2 cut(s) 289, 581
BmgT120I GGNCC 5 cut(s) 4, 144, 169, 268, 401
BmiI GGNNCC 5 cut(s) 6, 145, 403, 462, 600
BmrFI CCNGG 3 cut(s) 167, 337, 571
BmsI GCATC 1 cut(s) 249
BpmI CTGGAG 2 cut(s) 149, 308
BpuEI CTTGAG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 571
BsaHI GRCGYC 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 336
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 4 cut(s) 265, 328, 570, 595
Bse118I RCCGGY 2 cut(s) 236, 440
Bse1I ACTGG 1 cut(s) 607
BseBI CCWGG 2 cut(s) 167, 337
BseDI CCNNGG 1 cut(s) 336
BseGI GGATG 1 cut(s) 240
BseLI CCNNNNNNNGG 4 cut(s) 265, 328, 570, 595
BseNI ACTGG 1 cut(s) 607
BseSI GKGCMC 1 cut(s) 450
BseXI GCAGC 2 cut(s) 147, 196
BseYI CCCAGC 2 cut(s) 171, 201
Bsh1236I CGCG 1 cut(s) 438
BshFI GGCC 5 cut(s) 5, 170, 332, 402, 425
BshNI GGYRCC 1 cut(s) 460
BsiSI CCGG 3 cut(s) 237, 441, 571
BslI CCNNNNNNNGG 4 cut(s) 265, 328, 570, 595
BsnI GGCC 5 cut(s) 5, 170, 332, 402, 425
Bsp1286I GDGCHC 1 cut(s) 450
Bsp143I GATC 1 cut(s) 208
BspACI CCGC 7 cut(s) 178, 253, 306, 309, 312, 333, 444
BspANI GGCC 5 cut(s) 5, 170, 332, 402, 425
BspFNI CGCG 1 cut(s) 438
BspLI GGNNCC 5 cut(s) 6, 145, 403, 462, 600
BspT107I GGYRCC 1 cut(s) 460
BsrFI RCCGGY 2 cut(s) 236, 440
BsrI ACTGG 1 cut(s) 607
BssAI RCCGGY 2 cut(s) 236, 440
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 1 cut(s) 208
BssNI GRCGYC 1 cut(s) 372
Bst2UI CCWGG 2 cut(s) 167, 337
Bst4CI ACNGT 1 cut(s) 115
BstACI GRCGYC 1 cut(s) 372
BstC8I GCNNGC 5 cut(s) 182, 238, 330, 442, 446
BstENI CCTNNNNNAGG 2 cut(s) 263, 326
BstF5I GGATG 1 cut(s) 240
BstFNI CGCG 1 cut(s) 438
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 2 cut(s) 177, 440
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstMWI GCNNNNNNNGC 2 cut(s) 181, 305
BstNI CCWGG 2 cut(s) 167, 337
BstSCI CCNGG 3 cut(s) 165, 335, 569
BstSLI GKGCMC 1 cut(s) 450
BstUI CGCG 1 cut(s) 438
BstV1I GCAGC 2 cut(s) 147, 196
BsuRI GGCC 5 cut(s) 5, 170, 332, 402, 425
BtrI CACGTC 2 cut(s) 289, 581
BtsCI GGATG 1 cut(s) 240
Cac8I GCNNGC 5 cut(s) 182, 238, 330, 442, 446
CfoI GCGC 2 cut(s) 177, 440
Cfr10I RCCGGY 2 cut(s) 236, 440
Cfr13I GGNCC 5 cut(s) 4, 144, 169, 268, 401
CseI GACGC 1 cut(s) 380
Csp6I GTAC 2 cut(s) 193, 461
CviAII CATG 1 cut(s) 382
CviQI GTAC 2 cut(s) 193, 461
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
DrdI GACNNNNNNGTC 2 cut(s) 113, 377
DseDI GACNNNNNNGTC 2 cut(s) 113, 377
Eco147I AGGCCT 1 cut(s) 425
Eco47I GGWCC 2 cut(s) 144, 268
EcoNI CCTNNNNNAGG 2 cut(s) 263, 326
EcoO109I RGGNCCY 2 cut(s) 144, 268
EcoRI GAATTC 2 cut(s) 92, 481
EcoRII CCWGG 2 cut(s) 165, 335
FaeI CATG 1 cut(s) 385
FaiI YATR 1 cut(s) 383
FatI CATG 1 cut(s) 381
FauI CCCGC 2 cut(s) 260, 437
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 6 cut(s) 136, 178, 185, 309, 312, 333
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 6 cut(s) 136, 178, 185, 309, 312, 333
GlaI GCGC 2 cut(s) 176, 439
GluI GCNGC 6 cut(s) 136, 178, 185, 309, 312, 333
GsaI CCCAGC 2 cut(s) 175, 205
GsuI CTGGAG 2 cut(s) 149, 308
HaeII RGCGCY 1 cut(s) 178
HaeIII GGCC 5 cut(s) 5, 170, 332, 402, 425
HapII CCGG 3 cut(s) 237, 441, 571
HgaI GACGC 1 cut(s) 380
HhaI GCGC 2 cut(s) 177, 440
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 1 cut(s) 385
Hin6I GCGC 2 cut(s) 175, 438
HinP1I GCGC 2 cut(s) 175, 438
HincII GTYRAC 2 cut(s) 292, 584
HindII GTYRAC 2 cut(s) 292, 584
HinfI GANTC 3 cut(s) 41, 123, 155
HpaII CCGG 3 cut(s) 237, 441, 571
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 2 cut(s) 292, 584
Hpy188I TCNGA 3 cut(s) 79, 91, 349
Hpy188III TCNNGA 1 cut(s) 409
Hpy8I GTNNAC 2 cut(s) 292, 584
Hpy99I CGWCG 4 cut(s) 119, 293, 374, 380
HpyAV CCTTC 5 cut(s) 73, 508, 520, 526, 574
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4IV ACGT 2 cut(s) 288, 580
HpyF10VI GCNNNNNNNGC 2 cut(s) 181, 305
HpySE526I ACGT 2 cut(s) 288, 580
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 1 cut(s) 385
HspAI GCGC 2 cut(s) 175, 438
KpnI GGTACC 1 cut(s) 464
KroI GCCGGC 2 cut(s) 236, 440
KroNI GCCGGC 2 cut(s) 238, 442
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 1 cut(s) 390
Lsp1109I GCAGC 2 cut(s) 147, 196
LweI GCATC 1 cut(s) 249
MaeII ACGT 2 cut(s) 288, 580
MaeIII GTNAC 2 cut(s) 499, 613
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 1 cut(s) 629
MhlI GDGCHC 1 cut(s) 450
MluCI AATT 2 cut(s) 92, 481
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 510
MreI CGCCGGCG 1 cut(s) 440
MroNI GCCGGC 2 cut(s) 236, 440
MseI TTAA 1 cut(s) 510
MspA1I CMGCKG 1 cut(s) 180
MspI CCGG 3 cut(s) 237, 441, 571
MspR9I CCNGG 3 cut(s) 167, 337, 571
MvaI CCWGG 2 cut(s) 167, 337
MvnI CGCG 1 cut(s) 438
MwoI GCNNNNNNNGC 2 cut(s) 181, 305
NaeI GCCGGC 2 cut(s) 238, 442
NciI CCSGG 1 cut(s) 571
NdeII GATC 1 cut(s) 208
NgoMIV GCCGGC 2 cut(s) 236, 440
NlaIII CATG 1 cut(s) 385
NlaIV GGNNCC 5 cut(s) 6, 145, 403, 462, 600
NmuCI GTSAC 1 cut(s) 613
PceI AGGCCT 1 cut(s) 425
PcsI WCGNNNNNNNCGW 4 cut(s) 111, 285, 366, 586
PdiI GCCGGC 2 cut(s) 238, 442
PfeI GAWTC 2 cut(s) 41, 123
PflFI GACNNNGTC 3 cut(s) 158, 287, 374
PkrI GCNGC 6 cut(s) 137, 179, 186, 310, 313, 334
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PpuMI RGGWCCY 2 cut(s) 144, 268
Psp5II RGGWCCY 2 cut(s) 144, 268
Psp6I CCWGG 2 cut(s) 165, 335
PspFI CCCAGC 2 cut(s) 171, 201
PspGI CCWGG 2 cut(s) 165, 335
PspN4I GGNNCC 5 cut(s) 6, 145, 403, 462, 600
PspPI GGNCC 5 cut(s) 4, 144, 169, 268, 401
PspPPI RGGWCCY 2 cut(s) 144, 268
PsyI GACNNNGTC 3 cut(s) 158, 287, 374
RsaI GTAC 2 cut(s) 194, 462
RsaNI GTAC 2 cut(s) 193, 461
SalI GTCGAC 1 cut(s) 290
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 6 cut(s) 136, 178, 185, 309, 312, 333
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 5 cut(s) 4, 144, 169, 268, 401
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 3 cut(s) 167, 337, 571
SduI GDGCHC 1 cut(s) 450
SetI ASST 9 cut(s) 140, 189, 198, 231, 273, 291, 462, 519, 583
SfaNI GCATC 1 cut(s) 249
SgrAI CRCCGGYG 1 cut(s) 440
SinI GGWCC 2 cut(s) 144, 268
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 2 cut(s) 92, 481
SseBI AGGCCT 1 cut(s) 425
SsiI CCGC 7 cut(s) 178, 253, 306, 309, 312, 333, 444
StuI AGGCCT 1 cut(s) 425
StyD4I CCNGG 3 cut(s) 165, 335, 569
TaaI ACNGT 1 cut(s) 115
TaiI ACGT 2 cut(s) 291, 583
TaqI TCGA 3 cut(s) 291, 360, 416
TasI AATT 2 cut(s) 92, 481
TauI GCSGC 4 cut(s) 180, 311, 314, 335
TfiI GAWTC 2 cut(s) 41, 123
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TseFI GTSAC 1 cut(s) 613
TseI GCWGC 2 cut(s) 135, 184
Tsp45I GTSAC 1 cut(s) 613
TspDTI ATGAA 2 cut(s) 55, 629
TspGWI ACGGA 2 cut(s) 148, 578
Tth111I GACNNNGTC 3 cut(s) 158, 287, 374
VpaK11BI GGWCC 2 cut(s) 144, 268
XagI CCTNNNNNAGG 2 cut(s) 263, 326
XapI RAATTY 2 cut(s) 92, 481
XmiI GTMKAC 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.