Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005210

Physical Location & Seq

Genomic Coordinates Forward (+)

7062095 .. 7064386

Gene Structure 2292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0081600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGTCCAATATGGAGAACAAGAAAGGAAACATATTGATGCAGAAGTACGAGCTGGGGCGCCTTCTCGGGAAAGGTACATTTGCAAAGGTATACCATGCTCGAAACATGAAGACCGGCCAAAGTGTTGCCATTAAGATCATAGACAAGGAGAAGGTGCAACAAGTGGGATTGATTGATCAAATCAAGCGTGAAATCTCTGTGATGCGCCTTGTTAGGCACCCAAATGTTGTTCAGCTCTATGAAGTGATGGCCAGCAAGACCAAAATCTACTTTGCCATGGAGTATGTGAGAGGTGGTGAGCTCTTCAACAAGGTTGCCAGGGGAAAGCTCAAGGAAGACATGGCTAGAAAATACTTTCAACAGTTGATTGGCGCCGTTGATTACTGCCACAGCCGCGGAGTTTATCACCGTGACATCAAGCCAGAGAATCTCCTGGTTGATGAGCATGGTAACCTCAAGGTTTCAGATTTCGGGCTGAGTGCATTGTGGGAGTCGAGAGGTCAAGATGGTCTGCTGCACACAACTTGTGGAACTCCTGCTTATGTAGCACCAGAAGTGATCAACAAGAAAGGTTATGATGGTGCCAAGGCTGATATATGGTCATGTGGGGTTGTCCTTTACGTTCTTTTGGCTGGTTTTCTTCCATTCCATGACACAAATCTCATGGAAATGTACAGGAAGATCAGCAGAGGAGACTTTAAGAGTCCGCATTGGTTCCCTCCAGAGGTTCGTAAGCTTCTTGCACGGATTCTTGATCCGAATGCCACCGCGAGAATAAGTGTGGACAAGATCATGGAGAACAGTTGGTTCAAGAAGGGGTTTAAGCACATTGATGCCCCATTACCGATTCCAGGTGATCCAAACACATCTATCACTGATGTGCATTCTGCTTTTGGATCACCAGACAGTTCTAATAGGAAACCAGCAATTACTACTGCAGCAGCAAGCCCCATGAAGCCAACTAACTTCAATGCCTTTGACATCATATCTCTCTCACCCGGATTTGATCTATCCGGTTTGTTTGAGGGTGATATGAAGCAAAGATCATCACAGTCACGATTCACCACTACAAAACCAGCCTCTACTATTGTTTCAAAATTTGAAGAGATAGCGCAGATGGAGAGATTCAGATGCATGAAGCAGGACGGAACTGTCAAGTTGCAGGGCAGCAGGGAAGGAAGAAAAGGGCAGCTTGGTATTGATGCTGAGATTTTCGAGGTCACGCCTTCGTTTTTTGTTGTGGAGGTGAAGAAAACAGCTGGGGACACATTGGAATACATGCAATTCTATGACCAAGATTTAAAGCCCTCTCTTAAAGACATAGTATGGACTTGGCAAGGAAATGATCCACAGCAACAACATCAGCCAGCAACCCAAGTTATTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

462

Amino Acids

52.1

Weight (kDa)

9.21

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	16 - 270	2.5e-76	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	17 - 266	2.9e-41	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	108 - 258	5.6e-09	Kinase-like
NAF	PF03822	320 - 380	6.5e-21	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005210)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0390731 RchiOBHm_Chr5g0024111
rosa_multiflora	Rmu_sc0004031.1_g000007 Rmu_sc0013809.1_g000011 Rmu_sc0034927.1_g000001
rosa_rugosa	Rorug03G0108500 Rorug04G0346300 Rorug05G0081600 Rorug06G0311200 Rorug07G0213800
rosa_samantha	Rh1DG023500 Rh1DG057300 Rh2BG158100 Rh2BG387200 Rh2BG406800 Rh2BG533000 Rh2CG336200 Rh3BG347400 Rh3CG300700 Rh4CG141500 Rh4CG158300 Rh4DG375200 Rh5BG362200 Rh6CG135300 Rh6CG212500 Rh7CG199100 Rh7DG321700 Rh7DG335400 Rh7DG393400
rosa_wichuraiana	Rw4G014540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1151
AccB1I	GGYRCC	4 cut(s)	57, 216, 371, 581
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	2 cut(s)	396, 770
AciI	CCGC	4 cut(s)	394, 396, 707, 768
AclWI	GGATC	4 cut(s)	749, 851, 904, 1340
AcoI	YGGCCR	2 cut(s)	115, 249
AcsI	RAATTY	1 cut(s)	1097
AcyI	GRCGYC	2 cut(s)	58, 372
AfaI	GTAC	3 cut(s)	47, 76, 674
AfiI	CCNNNNNNNGG	2 cut(s)	724, 851
AgsI	TTSAA	6 cut(s)	307, 359, 811, 970, 1095, 1103
AjnI	CCWGG	3 cut(s)	317, 432, 850
AleI	CACNNNNGTG	1 cut(s)	878
AluBI	AGCT	7 cut(s)	52, 235, 301, 328, 736, 1192, 1259
AluI	AGCT	7 cut(s)	52, 235, 301, 328, 736, 1192, 1259
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	687
AlwI	GGATC	4 cut(s)	749, 851, 904, 1340
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	2 cut(s)	115, 249
ApeKI	GCWGC	5 cut(s)	514, 938, 941, 1167, 1189
ApoI	RAATTY	1 cut(s)	1097
AspLEI	GCGC	4 cut(s)	60, 207, 374, 1114
AsuC2I	CCSGG	1 cut(s)	999
AsuHPI	GGTGA	8 cut(s)	308, 398, 866, 891, 987, 1040, 1054, 1258
AvaI	CYCGRG	1 cut(s)	65
BalI	TGGCCA	1 cut(s)	251
BanI	GGYRCC	4 cut(s)	57, 216, 371, 581
BanII	GRGCYC	1 cut(s)	303
BbsI	GAAGAC	2 cut(s)	116, 342
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	5 cut(s)	501, 950, 953, 1179, 1201
BccI	CCATC	4 cut(s)	241, 500, 572, 1111
BceAI	ACGGC	1 cut(s)	359
BciT130I	CCWGG	3 cut(s)	319, 434, 852
BclI	TGATCA	2 cut(s)	175, 558
BcnI	CCSGG	1 cut(s)	999
BcoDI	GTCTC	1 cut(s)	687
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	1 cut(s)	936
BfoI	RGCGCY	2 cut(s)	61, 375
BisI	GCNGC	6 cut(s)	394, 515, 939, 942, 1168, 1190
BlsI	GCNGC	6 cut(s)	395, 516, 940, 943, 1169, 1191
Bme1390I	CCNGG	4 cut(s)	319, 434, 852, 999
BmeT110I	CYCGRG	1 cut(s)	65
BmiI	GGNNCC	5 cut(s)	59, 218, 373, 583, 716
BmrFI	CCNGG	4 cut(s)	319, 434, 852, 999
BmsI	GCATC	5 cut(s)	27, 192, 823, 1121, 1192
BpiI	GAAGAC	2 cut(s)	116, 342
BpmI	CTGGAG	1 cut(s)	705
BpuEI	CTTGAG	2 cut(s)	314, 440
BpuMI	CCSGG	1 cut(s)	999
BsaHI	GRCGYC	2 cut(s)	58, 372
BsaJI	CCNNGG	4 cut(s)	276, 318, 394, 585
BsaWI	WCCGGW	1 cut(s)	1013
Bsc4I	CCNNNNNNNGG	2 cut(s)	724, 851
Bse118I	RCCGGY	1 cut(s)	113
BseBI	CCWGG	3 cut(s)	319, 434, 852
BseDI	CCNNGG	4 cut(s)	276, 318, 394, 585
BseLI	CCNNNNNNNGG	2 cut(s)	724, 851
BseMII	CTCAG	2 cut(s)	467, 1197
BseRI	GAGGAG	1 cut(s)	705
BseXI	GCAGC	5 cut(s)	501, 950, 953, 1179, 1201
BseYI	CCCAGC	2 cut(s)	52, 1259
BsgI	GTGCAG	1 cut(s)	500
Bsh1236I	CGCG	2 cut(s)	396, 770
BshFI	GGCC	2 cut(s)	117, 251
BshNI	GGYRCC	4 cut(s)	57, 216, 371, 581
BsiHKAI	GWGCWC	1 cut(s)	303
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	3 cut(s)	114, 999, 1014
BslFI	GGGAC	1 cut(s)	1277
BslI	CCNNNNNNNGG	2 cut(s)	724, 851
BsmAI	GTCTC	1 cut(s)	687
BsmFI	GGGAC	1 cut(s)	1277
BsmI	GAATGC	2 cut(s)	766, 883
BsnI	GGCC	2 cut(s)	117, 251
BsoBI	CYCGRG	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp1407I	TGTACA	1 cut(s)	672
Bsp19I	CCATGG	1 cut(s)	276
BspACI	CCGC	4 cut(s)	394, 396, 707, 768
BspANI	GGCC	2 cut(s)	117, 251
BspCNI	CTCAG	2 cut(s)	468, 1198
BspFNI	CGCG	2 cut(s)	396, 770
BspLI	GGNNCC	5 cut(s)	59, 218, 373, 583, 716
BspMAI	CTGCAG	1 cut(s)	940
BspPI	GGATC	4 cut(s)	749, 851, 904, 1340
BspQI	GCTCTTC	1 cut(s)	308
BspT107I	GGYRCC	4 cut(s)	57, 216, 371, 581
BsrFI	RCCGGY	1 cut(s)	113
BsrGI	TGTACA	1 cut(s)	672
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	4 cut(s)	276, 318, 394, 585
BssNAI	GTATAC	1 cut(s)	91
BssNI	GRCGYC	2 cut(s)	58, 372
BssT1I	CCWWGG	2 cut(s)	276, 585
Bst1107I	GTATAC	1 cut(s)	91
Bst2UI	CCWGG	3 cut(s)	319, 434, 852
Bst4CI	ACNGT	6 cut(s)	363, 410, 803, 908, 1053, 1153
Bst6I	CTCTTC	2 cut(s)	308, 1098
BstACI	GRCGYC	2 cut(s)	58, 372
BstAUI	TGTACA	1 cut(s)	672
BstC8I	GCNNGC	3 cut(s)	253, 946, 1368
BstDEI	CTNAG	3 cut(s)	476, 1206, 1386
BstDSI	CCRYGG	2 cut(s)	276, 394
BstEII	GGTNACC	1 cut(s)	449
BstFNI	CGCG	2 cut(s)	396, 770
BstH2I	RGCGCY	2 cut(s)	61, 375
BstHHI	GCGC	4 cut(s)	60, 207, 374, 1114
BstMAI	GTCTC	1 cut(s)	687
BstMWI	GCNNNNNNNGC	2 cut(s)	393, 545
BstNI	CCWGG	3 cut(s)	319, 434, 852
BstNSI	RCATGY	1 cut(s)	1282
BstPI	GGTNACC	1 cut(s)	449
BstSCI	CCNGG	4 cut(s)	317, 432, 850, 997
BstSFI	CTRYAG	1 cut(s)	936
BstUI	CGCG	2 cut(s)	396, 770
BstV1I	GCAGC	5 cut(s)	501, 950, 953, 1179, 1201
BstV2I	GAAGAC	2 cut(s)	116, 342
BstZ17I	GTATAC	1 cut(s)	91
BsuRI	GGCC	2 cut(s)	117, 251
BtgI	CCRYGG	2 cut(s)	276, 394
BtsIMutI	CAGTG	1 cut(s)	873
Cac8I	GCNNGC	3 cut(s)	253, 946, 1368
CfoI	GCGC	4 cut(s)	60, 207, 374, 1114
Cfr10I	RCCGGY	1 cut(s)	113
Cfr42I	CCGCGG	1 cut(s)	397
Csp6I	GTAC	3 cut(s)	46, 75, 673
CviQI	GTAC	3 cut(s)	46, 75, 673
DdeI	CTNAG	3 cut(s)	476, 1206, 1386
DinI	GGCGCC	2 cut(s)	59, 373
DraI	TTTAAA	1 cut(s)	1302
DrdI	GACNNNNNNGTC	1 cut(s)	1151
DseDI	GACNNNNNNGTC	1 cut(s)	1151
EaeI	YGGCCR	2 cut(s)	115, 249
Eam1104I	CTCTTC	2 cut(s)	308, 1098
EarI	CTCTTC	2 cut(s)	308, 1098
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	2 cut(s)	276, 585
Eco24I	GRGCYC	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	301
Eco88I	CYCGRG	1 cut(s)	65
Eco91I	GGTNACC	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	301
EcoO65I	GGTNACC	1 cut(s)	449
EcoRII	CCWGG	3 cut(s)	317, 432, 850
EcoT14I	CCWWGG	2 cut(s)	276, 585
EcoT22I	ATGCAT	1 cut(s)	1136
EcoT38I	GRGCYC	1 cut(s)	303
EgeI	GGCGCC	2 cut(s)	59, 373
EheI	GGCGCC	2 cut(s)	59, 373
ErhI	CCWWGG	2 cut(s)	276, 585
FalI	AAGNNNNNCTT	2 cut(s)	1176, 1208
FaqI	GGGAC	1 cut(s)	1277
FbaI	TGATCA	2 cut(s)	175, 558
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	6 cut(s)	394, 515, 939, 942, 1168, 1190
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	6 cut(s)	394, 515, 939, 942, 1168, 1190
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	4 cut(s)	59, 206, 373, 1113
GluI	GCNGC	6 cut(s)	394, 515, 939, 942, 1168, 1190
GsaI	CCCAGC	2 cut(s)	56, 1263
GsuI	CTGGAG	1 cut(s)	705
HaeII	RGCGCY	2 cut(s)	61, 375
HaeIII	GGCC	2 cut(s)	117, 251
HapII	CCGG	3 cut(s)	114, 999, 1014
HhaI	GCGC	4 cut(s)	60, 207, 374, 1114
Hin1I	GRCGYC	2 cut(s)	58, 372
Hin6I	GCGC	4 cut(s)	58, 205, 372, 1112
HinP1I	GCGC	4 cut(s)	58, 205, 372, 1112
HindIII	AAGCTT	1 cut(s)	734
HinfI	GANTC	7 cut(s)	427, 491, 703, 748, 847, 1059, 1125
HpaII	CCGG	3 cut(s)	114, 999, 1014
HphI	GGTGA	8 cut(s)	308, 398, 866, 891, 987, 1040, 1054, 1258
Hpy166II	GTNNAC	2 cut(s)	91, 784
Hpy188I	TCNGA	3 cut(s)	466, 759, 1130
Hpy188III	TCNNGA	7 cut(s)	67, 495, 503, 722, 752, 811, 1056
Hpy8I	GTNNAC	2 cut(s)	91, 784
HpyAV	CCTTC	5 cut(s)	71, 145, 808, 1169, 1236
HpyCH4III	ACNGT	6 cut(s)	363, 410, 803, 908, 1053, 1153
HpyCH4IV	ACGT	1 cut(s)	621
HpyF10VI	GCNNNNNNNGC	2 cut(s)	393, 545
HpyF3I	CTNAG	3 cut(s)	476, 1206, 1386
HpySE526I	ACGT	1 cut(s)	621
Hsp92I	GRCGYC	2 cut(s)	58, 372
HspAI	GCGC	4 cut(s)	58, 205, 372, 1112
KasI	GGCGCC	2 cut(s)	57, 371
Ksp22I	TGATCA	2 cut(s)	175, 558
KspI	CCGCGG	1 cut(s)	397
LguI	GCTCTTC	1 cut(s)	308
Lsp1109I	GCAGC	5 cut(s)	501, 950, 953, 1179, 1201
LweI	GCATC	5 cut(s)	27, 192, 823, 1121, 1192
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	4 cut(s)	410, 449, 1053, 1219
MboII	GAAGA	8 cut(s)	121, 295, 347, 632, 691, 1115, 1191, 1261
MhlI	GDGCHC	1 cut(s)	303
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	3 cut(s)	927, 1097, 1283
MluNI	TGGCCA	1 cut(s)	251
Mly113I	GGCGCC	2 cut(s)	58, 372
MlyI	GAGTC	2 cut(s)	500, 712
Mox20I	TGGCCA	1 cut(s)	251
Mph1103I	ATGCAT	1 cut(s)	1136
MscI	TGGCCA	1 cut(s)	251
MseI	TTAA	5 cut(s)	132, 699, 822, 1301, 1314
MslI	CAYNNNNRTG	5 cut(s)	35, 222, 668, 831, 878
Msp20I	TGGCCA	1 cut(s)	251
MspA1I	CMGCKG	2 cut(s)	396, 1259
MspI	CCGG	3 cut(s)	114, 999, 1014
MspR9I	CCNGG	4 cut(s)	319, 434, 852, 999
Mva1269I	GAATGC	2 cut(s)	766, 883
MvaI	CCWGG	3 cut(s)	319, 434, 852
MvnI	CGCG	2 cut(s)	396, 770
MwoI	GCNNNNNNNGC	2 cut(s)	393, 545
NarI	GGCGCC	2 cut(s)	58, 372
NciI	CCSGG	1 cut(s)	999
NcoI	CCATGG	1 cut(s)	276
NlaIV	GGNNCC	5 cut(s)	59, 218, 373, 583, 716
NmuCI	GTSAC	3 cut(s)	410, 1053, 1219
NsiI	ATGCAT	1 cut(s)	1136
NspI	RCATGY	1 cut(s)	1282
OliI	CACNNNNGTG	1 cut(s)	878
PciSI	GCTCTTC	1 cut(s)	308
PctI	GAATGC	2 cut(s)	766, 883
PfeI	GAWTC	5 cut(s)	427, 748, 847, 1059, 1125
PkrI	GCNGC	6 cut(s)	395, 516, 940, 943, 1169, 1191
PleI	GAGTC	2 cut(s)	499, 711
PluTI	GGCGCC	2 cut(s)	61, 375
PpsI	GAGTC	2 cut(s)	499, 711
Psp124BI	GAGCTC	1 cut(s)	303
Psp6I	CCWGG	3 cut(s)	317, 432, 850
PspEI	GGTNACC	1 cut(s)	449
PspFI	CCCAGC	2 cut(s)	52, 1259
PspGI	CCWGG	3 cut(s)	317, 432, 850
PspN4I	GGNNCC	5 cut(s)	59, 218, 373, 583, 716
PstI	CTGCAG	1 cut(s)	940
PvuII	CAGCTG	1 cut(s)	1259
RsaI	GTAC	3 cut(s)	47, 76, 674
RsaNI	GTAC	3 cut(s)	46, 75, 673
RseI	CAYNNNNRTG	5 cut(s)	35, 222, 668, 831, 878
SacI	GAGCTC	1 cut(s)	303
SacII	CCGCGG	1 cut(s)	397
SapI	GCTCTTC	1 cut(s)	308
SaqAI	TTAA	5 cut(s)	132, 699, 822, 1301, 1314
SatI	GCNGC	6 cut(s)	394, 515, 939, 942, 1168, 1190
SchI	GAGTC	2 cut(s)	500, 712
ScrFI	CCNGG	4 cut(s)	319, 434, 852, 999
SduI	GDGCHC	1 cut(s)	303
SfaNI	GCATC	5 cut(s)	27, 192, 823, 1121, 1192
SfcI	CTRYAG	1 cut(s)	936
SfoI	GGCGCC	2 cut(s)	59, 373
Sfr303I	CCGCGG	1 cut(s)	397
SgrBI	CCGCGG	1 cut(s)	397
SmiMI	CAYNNNNRTG	5 cut(s)	35, 222, 668, 831, 878
SmlI	CTYRAG	2 cut(s)	329, 455
SmoI	CTYRAG	2 cut(s)	329, 455
Sse9I	AATT	3 cut(s)	927, 1097, 1283
SsiI	CCGC	4 cut(s)	394, 396, 707, 768
SspDI	GGCGCC	2 cut(s)	57, 371
SspMI	CTAG	1 cut(s)	345
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	4 cut(s)	317, 432, 850, 997
StyI	CCWWGG	2 cut(s)	276, 585
TaaI	ACNGT	6 cut(s)	363, 410, 803, 908, 1053, 1153
TaiI	ACGT	1 cut(s)	624
TaqI	TCGA	3 cut(s)	100, 494, 1215
TasI	AATT	3 cut(s)	927, 1097, 1283
TatI	WGTACW	1 cut(s)	672
TauI	GCSGC	1 cut(s)	396
TfiI	GAWTC	5 cut(s)	427, 748, 847, 1059, 1125
Tru1I	TTAA	5 cut(s)	132, 699, 822, 1301, 1314
Tru9I	TTAA	5 cut(s)	132, 699, 822, 1301, 1314
TscAI	CASTG	1 cut(s)	880
TseFI	GTSAC	3 cut(s)	410, 1053, 1219
TseI	GCWGC	5 cut(s)	514, 938, 941, 1167, 1189
Tsp45I	GTSAC	3 cut(s)	410, 1053, 1219
TspDTI	ATGAA	5 cut(s)	122, 255, 968, 1049, 1151
TspGWI	ACGGA	2 cut(s)	760, 1161
TspRI	CASTG	1 cut(s)	880
XapI	RAATTY	1 cut(s)	1097
XceI	RCATGY	1 cut(s)	1282
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	1 cut(s)	345
Zsp2I	ATGCAT	1 cut(s)	1136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.