Rmu_ssc0000024.1_g000008

Transport and Golgi organisation 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000024.1
OG0002621
Physical Location & Seq
Reverse (-)
40013 .. 44791
4779 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1551 bp
atgtgtatagcggcgttcgtgtggcagtctcacccacgctaccccttcctcctcctcctcaacagggacgaatatttcaaccgggaaacggcggctttgcaatggtgggacgacaccctcgggatattgggcggaagagatgcggtggaaggtgggacatggctggcttgttccaaggatggtaaggtggcttttctcactaatgtcagagagctcaacagactcgtgcaatgcaagagcagaggagaactcccatttcttttcttgtcgggtaaaaagagtccgatggaatttgcagaggaagttgttgaggaggcagataagtacaacggttttaacctgatattggctgatcttcgttctaagaccatgctttatgtaaccaacataccaaaggaggaaaaaaagtttatcactgaggtttcaccggggattcatgtattgacaaatgatgcaatgcttgattctccttggcctaagtctcaacgacttagcaatagtttcaaagagatgctcaacaagtatggagatgatgaagtttcgttaaaggaaatggctctacgactaatgacagacgagaccagagacgacaaaagcctgctaccttgcatttattctccagaagtagaatacgaactaagttccatatatattgaatatgcccctgcattggggtattatggtactagaagcactgaagcagtgtctgtcaatacaaatggggaagtcaccttttatgagagatttatagctggggattggcatgaaaggaccgagaccttccagattgaagaggagataggccttgccgaccccagtggtggcaacttttctagcacaagtgcacgggttgcagccacaatgctcgccgcaggagcatttcttgtggttgtccacagtcgcagggtcggtcctgaagcacttctgcagtgtcctgcgaatacaactcggatcaaagagagagacgaagaggaagtgaatggtaagcatacatggttcagtacggttttgaagtttggtgttggcccttctgcctctggtggcgccttctctttctctgctcaacctactcgagatttacctatgccttcttcttcactgctgaaaaagaagaagccagttattcgtcggctagagcgatcatctgctgaaattgcttctcagggtaccgtgcatatcacggcggagatggaaggaatggatcaagagaagcaaactttggtttacaagaaaagaggtcgagaagaggtaactgttccatcccctaagaaattcaaaactattttgggtggtaagcttctcactctccatgcggaagctcttggtttggctgaagctgaggatgatttcgccctagtgacactgaagaagaggtcgggaaggccgttgggaagcaagaacaagggtcccaggtctcaaaagaaggttggtttgacccctttgcgtcttacctatcctgctactactactgctcaggaggttggccctaaagctaaggggctaagggcaagggaaaactctaggtttcctcttttctgtgcctacctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TANGO2

Protein Analysis

516

Amino Acids

57.55

Weight (kDa)

8.04

Isoelectric Point (pI)

44.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TANGO2 PF05742 1 - 249 2.7e-72 Transport and Golgi organisation 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1166
AccB1I GGYRCC 2 cut(s) 1043, 1166
AciI CCGC 7 cut(s) 11, 92, 132, 143, 870, 1184, 1313
AclWI GGATC 2 cut(s) 959, 1209
AcsI RAATTY 2 cut(s) 290, 1271
AcuI CTGAAG 4 cut(s) 717, 936, 1353, 1385
AcyI GRCGYC 1 cut(s) 1044
AfaI GTAC 4 cut(s) 326, 685, 1003, 1168
AfiI CCNNNNNNNGG 6 cut(s) 64, 88, 346, 670, 671, 821
AgsI TTSAA 6 cut(s) 79, 505, 656, 791, 1012, 1276
AjnI CCWGG 1 cut(s) 1409
AjuI GAANNNNNNNTTGG 2 cut(s) 1202, 1234
AluBI AGCT 6 cut(s) 214, 752, 1297, 1319, 1337, 1493
AluI AGCT 6 cut(s) 214, 752, 1297, 1319, 1337, 1493
Alw21I GWGCWC 2 cut(s) 216, 847
Alw26I GTCTC 7 cut(s) 33, 486, 572, 579, 770, 957, 1419
Alw44I GTGCAC 1 cut(s) 843
AlwI GGATC 2 cut(s) 959, 1209
AlwNI CAGNNNCTG 1 cut(s) 707
Ama87I CYCGRG 2 cut(s) 119, 1071
AoxI GGCC 5 cut(s) 473, 802, 1024, 1382, 1483
ApaLI GTGCAC 1 cut(s) 843
ApeKI GCWGC 1 cut(s) 854
ApoI RAATTY 2 cut(s) 290, 1271
Asp700I GAANNNNTTC 1 cut(s) 921
Asp718I GGTACC 1 cut(s) 1166
AspLEI GCGC 1 cut(s) 1046
AspS9I GGNCC 5 cut(s) 771, 911, 1025, 1406, 1484
AsuC2I CCSGG 2 cut(s) 83, 429
AsuHPI GGTGA 3 cut(s) 23, 417, 721
AvaI CYCGRG 2 cut(s) 119, 1071
AvaII GGWCC 3 cut(s) 771, 911, 1406
BaeGI GKGCMC 1 cut(s) 847
BanI GGYRCC 2 cut(s) 1043, 1166
BanII GRGCYC 1 cut(s) 216
BauI CACGAG 1 cut(s) 224
Bbv12I GWGCWC 2 cut(s) 216, 847
BbvCI CCTCAGC 1 cut(s) 1338
BbvI GCAGC 1 cut(s) 866
BccI CCATC 4 cut(s) 173, 280, 1183, 1267
BceAI ACGGC 3 cut(s) 105, 1197, 1369
BciT130I CCWGG 1 cut(s) 1411
BcnI CCSGG 2 cut(s) 83, 429
BcoDI GTCTC 7 cut(s) 33, 486, 572, 579, 770, 957, 1419
BfaI CTAG 5 cut(s) 687, 834, 1133, 1355, 1521
BfmI CTRYAG 1 cut(s) 926
BfoI RGCGCY 1 cut(s) 1047
BisI GCNGC 4 cut(s) 12, 93, 855, 870
BlsI GCNGC 4 cut(s) 13, 94, 856, 871
Bme1390I CCNGG 3 cut(s) 83, 429, 1411
Bme18I GGWCC 3 cut(s) 771, 911, 1406
BmeT110I CYCGRG 2 cut(s) 119, 1071
BmgT120I GGNCC 5 cut(s) 771, 911, 1025, 1406, 1484
BmiI GGNNCC 4 cut(s) 1045, 1168, 1407, 1408
BmrFI CCNGG 3 cut(s) 83, 429, 1411
BmrI ACTGGG 1 cut(s) 810
BmsI GCATC 3 cut(s) 130, 442, 501
BmuI ACTGGG 1 cut(s) 810
BplI GAGNNNNNCTC 2 cut(s) 234, 266
BpmI CTGGAG 1 cut(s) 603
Bpu10I CCTNAGC 4 cut(s) 1338, 1473, 1494, 1502
BpuMI CCSGG 2 cut(s) 83, 429
BsaHI GRCGYC 1 cut(s) 1044
BsaI GGTCTC 3 cut(s) 572, 770, 1419
BsaJI CCNNGG 5 cut(s) 118, 174, 428, 470, 1409
Bsc4I CCNNNNNNNGG 6 cut(s) 64, 88, 346, 670, 671, 821
Bse1I ACTGG 2 cut(s) 816, 1118
Bse3DI GCAATG 3 cut(s) 107, 236, 462
BseBI CCWGG 1 cut(s) 1411
BseDI CCNNGG 5 cut(s) 118, 174, 428, 470, 1409
BseGI GGATG 3 cut(s) 184, 1259, 1348
BseLI CCNNNNNNNGG 6 cut(s) 64, 88, 346, 670, 671, 821
BseMI GCAATG 3 cut(s) 107, 236, 462
BseMII CTCAG 4 cut(s) 408, 1175, 1329, 1487
BseNI ACTGG 2 cut(s) 816, 1118
BseRI GAGGAG 6 cut(s) 41, 44, 47, 258, 326, 809
BseSI GKGCMC 1 cut(s) 847
BseXI GCAGC 1 cut(s) 866
BseYI CCCAGC 1 cut(s) 752
BshFI GGCC 5 cut(s) 475, 804, 1026, 1384, 1485
BshNI GGYRCC 2 cut(s) 1043, 1166
BsiHKAI GWGCWC 2 cut(s) 216, 847
BsiHKCI CYCGRG 2 cut(s) 119, 1071
BsiSI CCGG 2 cut(s) 82, 428
BslFI GGGAC 4 cut(s) 80, 122, 169, 1392
BslI CCNNNNNNNGG 6 cut(s) 64, 88, 346, 670, 671, 821
BsmAI GTCTC 7 cut(s) 33, 486, 572, 579, 770, 957, 1419
BsmBI CGTCTC 2 cut(s) 579, 957
BsmFI GGGAC 4 cut(s) 80, 122, 169, 1392
BsnI GGCC 5 cut(s) 475, 804, 1026, 1384, 1485
Bso31I GGTCTC 3 cut(s) 572, 770, 1419
BsoBI CYCGRG 2 cut(s) 119, 1071
Bsp1286I GDGCHC 2 cut(s) 216, 847
Bsp143I GATC 4 cut(s) 352, 951, 1139, 1201
BspACI CCGC 7 cut(s) 11, 92, 132, 143, 870, 1184, 1313
BspANI GGCC 5 cut(s) 475, 804, 1026, 1384, 1485
BspCNI CTCAG 4 cut(s) 409, 1174, 1330, 1486
BspLI GGNNCC 4 cut(s) 1045, 1168, 1407, 1408
BspMAI CTGCAG 1 cut(s) 930
BspPI GGATC 2 cut(s) 959, 1209
BspT107I GGYRCC 2 cut(s) 1043, 1166
BspTNI GGTCTC 3 cut(s) 572, 770, 1419
BsrDI GCAATG 3 cut(s) 107, 236, 462
BsrI ACTGG 2 cut(s) 816, 1118
BssECI CCNNGG 5 cut(s) 118, 174, 428, 470, 1409
BssMI GATC 4 cut(s) 352, 951, 1139, 1201
BssNI GRCGYC 1 cut(s) 1044
BssSI CACGAG 1 cut(s) 224
BssT1I CCWWGG 2 cut(s) 174, 470
Bst2BI CACGAG 1 cut(s) 224
Bst2UI CCWGG 1 cut(s) 1411
Bst4CI ACNGT 5 cut(s) 332, 899, 1006, 1171, 1255
Bst6I CTCTTC 5 cut(s) 130, 786, 963, 1239, 1364
BstACI GRCGYC 1 cut(s) 1044
BstAPI GCANNNNNTGC 1 cut(s) 851
BstC8I GCNNGC 3 cut(s) 165, 599, 867
BstF5I GGATG 3 cut(s) 184, 1259, 1348
BstH2I RGCGCY 1 cut(s) 1047
BstHHI GCGC 1 cut(s) 1046
BstKTI GATC 4 cut(s) 355, 954, 1142, 1204
BstMAI GTCTC 7 cut(s) 33, 486, 572, 579, 770, 957, 1419
BstMBI GATC 4 cut(s) 352, 951, 1139, 1201
BstMWI GCNNNNNNNGC 3 cut(s) 851, 875, 1154
BstNI CCWGG 1 cut(s) 1411
BstSCI CCNGG 3 cut(s) 81, 427, 1409
BstSFI CTRYAG 1 cut(s) 926
BstSLI GKGCMC 1 cut(s) 847
BstV1I GCAGC 1 cut(s) 866
BsuRI GGCC 5 cut(s) 475, 804, 1026, 1384, 1485
BtsCI GGATG 3 cut(s) 184, 1259, 1348
BtsI GCAGTG 3 cut(s) 708, 935, 1097
BtsIMutI CAGTG 7 cut(s) 414, 693, 708, 823, 935, 1097, 1361
Cac8I GCNNGC 3 cut(s) 165, 599, 867
CaiI CAGNNNCTG 1 cut(s) 707
CfoI GCGC 1 cut(s) 1046
Cfr13I GGNCC 5 cut(s) 771, 911, 1025, 1406, 1484
CseI GACGC 1 cut(s) 1433
Csp6I GTAC 4 cut(s) 325, 684, 1002, 1167
CviAII CATG 6 cut(s) 159, 370, 437, 764, 993, 1310
CviQI GTAC 4 cut(s) 325, 684, 1002, 1167
DinI GGCGCC 1 cut(s) 1045
DpnI GATC 4 cut(s) 354, 953, 1141, 1203
DpnII GATC 4 cut(s) 352, 951, 1139, 1201
Eam1104I CTCTTC 5 cut(s) 130, 786, 963, 1239, 1364
EarI CTCTTC 5 cut(s) 130, 786, 963, 1239, 1364
EciI GGCGGA 2 cut(s) 147, 1199
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 174, 470
Eco147I AGGCCT 1 cut(s) 804
Eco24I GRGCYC 1 cut(s) 216
Eco31I GGTCTC 3 cut(s) 572, 770, 1419
Eco47I GGWCC 3 cut(s) 771, 911, 1406
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 4 cut(s) 717, 936, 1353, 1385
Eco88I CYCGRG 2 cut(s) 119, 1071
EcoICRI GAGCTC 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 1406
EcoRII CCWGG 1 cut(s) 1409
EcoT14I CCWWGG 2 cut(s) 174, 470
EcoT38I GRGCYC 1 cut(s) 216
EgeI GGCGCC 1 cut(s) 1045
EheI GGCGCC 1 cut(s) 1045
ErhI CCWWGG 2 cut(s) 174, 470
Esp3I CGTCTC 2 cut(s) 579, 957
FaeI CATG 6 cut(s) 162, 373, 440, 767, 996, 1313
FaqI GGGAC 4 cut(s) 80, 122, 169, 1392
FatI CATG 6 cut(s) 158, 369, 436, 763, 992, 1309
Fnu4HI GCNGC 4 cut(s) 12, 93, 855, 870
FokI GGATG 3 cut(s) 191, 1246, 1355
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 4 cut(s) 12, 93, 855, 870
FspBI CTAG 5 cut(s) 687, 834, 1133, 1355, 1521
GlaI GCGC 1 cut(s) 1045
GluI GCNGC 4 cut(s) 12, 93, 855, 870
GsaI CCCAGC 1 cut(s) 756
GsuI CTGGAG 1 cut(s) 603
HaeII RGCGCY 1 cut(s) 1047
HaeIII GGCC 5 cut(s) 475, 804, 1026, 1384, 1485
HapII CCGG 2 cut(s) 82, 428
HgaI GACGC 1 cut(s) 1433
HhaI GCGC 1 cut(s) 1046
Hin1I GRCGYC 1 cut(s) 1044
Hin1II CATG 6 cut(s) 162, 373, 440, 767, 996, 1313
Hin6I GCGC 1 cut(s) 1044
HinP1I GCGC 1 cut(s) 1044
HindIII AAGCTT 1 cut(s) 1295
HinfI GANTC 4 cut(s) 222, 280, 433, 464
HpaII CCGG 2 cut(s) 82, 428
HphI GGTGA 3 cut(s) 23, 417, 721
Hpy166II GTNNAC 3 cut(s) 845, 895, 1225
Hpy188I TCNGA 3 cut(s) 209, 285, 951
Hpy188III TCNNGA 9 cut(s) 121, 620, 784, 914, 1073, 1205, 1241, 1377, 1475
Hpy8I GTNNAC 3 cut(s) 845, 895, 1225
Hpy99I CGWCG 1 cut(s) 1131
HpyAV CCTTC 9 cut(s) 55, 143, 790, 1038, 1057, 1098, 1187, 1374, 1417
HpyCH4III ACNGT 5 cut(s) 332, 899, 1006, 1171, 1255
HpyF10VI GCNNNNNNNGC 3 cut(s) 851, 875, 1154
Hsp92I GRCGYC 1 cut(s) 1044
Hsp92II CATG 6 cut(s) 162, 373, 440, 767, 996, 1313
HspAI GCGC 1 cut(s) 1044
KasI GGCGCC 1 cut(s) 1043
KflI GGGWCCC 1 cut(s) 1406
KpnI GGTACC 1 cut(s) 1170
Kzo9I GATC 4 cut(s) 352, 951, 1139, 1201
LmnI GCTCC 1 cut(s) 875
Lsp1109I GCAGC 1 cut(s) 866
LweI GCATC 3 cut(s) 130, 442, 501
MaeI CTAG 5 cut(s) 687, 834, 1133, 1355, 1521
MaeIII GTNAC 4 cut(s) 379, 727, 1249, 1357
MalI GATC 4 cut(s) 354, 953, 1141, 1203
MboI GATC 4 cut(s) 352, 951, 1139, 1201
MhlI GDGCHC 2 cut(s) 216, 847
MluCI AATT 3 cut(s) 290, 1152, 1271
Mly113I GGCGCC 1 cut(s) 1044
MlyI GAGTC 2 cut(s) 216, 289
MroXI GAANNNNTTC 1 cut(s) 921
MseI TTAA 2 cut(s) 336, 545
MspI CCGG 2 cut(s) 82, 428
MspR9I CCNGG 3 cut(s) 83, 429, 1411
MvaI CCWGG 1 cut(s) 1411
MwoI GCNNNNNNNGC 3 cut(s) 851, 875, 1154
NarI GGCGCC 1 cut(s) 1044
NciI CCSGG 2 cut(s) 83, 429
NdeII GATC 4 cut(s) 352, 951, 1139, 1201
NlaIII CATG 6 cut(s) 162, 373, 440, 767, 996, 1313
NlaIV GGNNCC 4 cut(s) 1045, 1168, 1407, 1408
NmuCI GTSAC 2 cut(s) 727, 1357
PaeR7I CTCGAG 1 cut(s) 1071
PceI AGGCCT 1 cut(s) 804
PcsI WCGNNNNNNNCGW 2 cut(s) 1135, 1382
PdmI GAANNNNTTC 1 cut(s) 921
PfeI GAWTC 2 cut(s) 433, 464
PkrI GCNGC 4 cut(s) 13, 94, 856, 871
PleI GAGTC 2 cut(s) 216, 288
PluTI GGCGCC 1 cut(s) 1047
PpsI GAGTC 2 cut(s) 216, 288
PpuMI RGGWCCY 1 cut(s) 1406
Psp124BI GAGCTC 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 1406
Psp6I CCWGG 1 cut(s) 1409
PspFI CCCAGC 1 cut(s) 752
PspGI CCWGG 1 cut(s) 1409
PspN4I GGNNCC 4 cut(s) 1045, 1168, 1407, 1408
PspPI GGNCC 5 cut(s) 771, 911, 1025, 1406, 1484
PspPPI RGGWCCY 1 cut(s) 1406
PstI CTGCAG 1 cut(s) 930
PstNI CAGNNNCTG 1 cut(s) 707
RsaI GTAC 4 cut(s) 326, 685, 1003, 1168
RsaNI GTAC 4 cut(s) 325, 684, 1002, 1167
SacI GAGCTC 1 cut(s) 216
SaqAI TTAA 2 cut(s) 336, 545
SatI GCNGC 4 cut(s) 12, 93, 855, 870
Sau3AI GATC 4 cut(s) 352, 951, 1139, 1201
Sau96I GGNCC 5 cut(s) 771, 911, 1025, 1406, 1484
SchI GAGTC 2 cut(s) 216, 289
ScrFI CCNGG 3 cut(s) 83, 429, 1411
SduI GDGCHC 2 cut(s) 216, 847
SfaNI GCATC 3 cut(s) 130, 442, 501
SfcI CTRYAG 1 cut(s) 926
SfoI GGCGCC 1 cut(s) 1045
Sfr274I CTCGAG 1 cut(s) 1071
SinI GGWCC 3 cut(s) 771, 911, 1406
SlaI CTCGAG 1 cut(s) 1071
SmlI CTYRAG 1 cut(s) 1071
SmoI CTYRAG 1 cut(s) 1071
Sse9I AATT 3 cut(s) 290, 1152, 1271
SseBI AGGCCT 1 cut(s) 804
SsiI CCGC 7 cut(s) 11, 92, 132, 143, 870, 1184, 1313
SspDI GGCGCC 1 cut(s) 1043
SspI AATATT 1 cut(s) 74
SspMI CTAG 5 cut(s) 687, 834, 1133, 1355, 1521
SstI GAGCTC 1 cut(s) 216
StuI AGGCCT 1 cut(s) 804
StyD4I CCNGG 3 cut(s) 81, 427, 1409
StyI CCWWGG 2 cut(s) 174, 470
TaaI ACNGT 5 cut(s) 332, 899, 1006, 1171, 1255
TaqI TCGA 2 cut(s) 1072, 1240
TaqII GACCGA 2 cut(s) 788, 899
TasI AATT 3 cut(s) 290, 1152, 1271
TatI WGTACW 1 cut(s) 324
TauI GCSGC 3 cut(s) 14, 95, 872
TfiI GAWTC 2 cut(s) 433, 464
Tru1I TTAA 2 cut(s) 336, 545
Tru9I TTAA 2 cut(s) 336, 545
TscAI CASTG 7 cut(s) 421, 700, 708, 823, 935, 1104, 1368
TseFI GTSAC 2 cut(s) 727, 1357
TseI GCWGC 1 cut(s) 854
Tsp45I GTSAC 2 cut(s) 727, 1357
TspDTI ATGAA 3 cut(s) 425, 549, 780
TspRI CASTG 7 cut(s) 421, 700, 708, 823, 935, 1104, 1368
VneI GTGCAC 1 cut(s) 843
VpaK11BI GGWCC 3 cut(s) 771, 911, 1406
XapI RAATTY 2 cut(s) 290, 1271
XhoI CTCGAG 1 cut(s) 1071
XmnI GAANNNNTTC 1 cut(s) 921
XspI CTAG 5 cut(s) 687, 834, 1133, 1355, 1521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.