Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000410.1

Orthogroup ID

OG0002528

Physical Location & Seq

Genomic Coordinates Reverse (-)

237866 .. 240380

Gene Structure 2515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

atggctagaaagcacagtgttgaattgagcgataatgattggcatagaagtaaaaacaatcccaggtcgaactatcgtcttgaacgtggcgatgaaattaattcttcagattctgatagaggatattctacaaaaagaaaaatttttgatagaagatgtagaacaaagcaacatgctgggatatgggatgagcatcataggaaggaatcacgaaataatgatcgacatagcagttcaaaaccacctcatggacgctccacattgctagggggaaaccgaaaccgaaacctgaatactgatgtgtcaagtttgggaaagagggatcgactttatgttccgccttataagttggcccgaaagatgaaagaggtcgaagataaaagtagcattgagtatcagaggctgacatgggatgccttaaaaaaaagcatcaatggggtagtgaacaaggtcaatgctggcaacataaagaatataatccctgagatcttttcagagaatctcattcgcgcttatgtgagaagaattgtcttgaagcttaagatagcattcaagcggaacgacaagccacagctactagctgcagttaaattcattgctcatcttgtaaaccaacaagtggctcatgagattgtagcattggaattgctaactgtactgcttgaaaaccctacagatgacagtgttgaagttgctgtatggtttgtgacagattgtggctcaatgctacaagacctttcaccgacagggctgcgccgaatctttgatcggtttttgaggattcttcatgaaggggaaattgacaaacgtgttcagtttttgattgagggcttattagctttaaggaaaggcaagtttaatggttacccagctgttcgtccagagttggacctcgtggagcaagaagaccagttcactcatttggtttctcttcaagatgagatagatccagaagatagccttaatctcttcaagccggaccctgatttccttaaggaccaaatcaaccccatattttttgctgttaatgagctcggccttgatcttgtcatcgtcggtctcgtccttgatgaaatcgaagaagcacggggccgagaactcataaatctcgtcgttcatcaaatacttccggtcttaatgagaaagagagggagagagaaaagcagagagaaagaggcaaacagatcgatagatcggactgggagtgcagatgatgatagatcaagctcgaggtctagaggtctgcagaatgagatcggggactcgggtcagagagcgaggcaggggaacacggggtcagagactgacgtcggggactcggggtcaggtcggaggcggcttggagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0071006 GO:0071012 GO:0071013 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

449

Amino Acids

51.37

Weight (kDa)

9.18

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIF4G	PF02854	189 - 283	3e-08	MIF4G domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80930
fragaria_vesca	FvH4_3g01450 FvH4_3g43230 FvH4_3g43240 FvH4_3g43240
malus_domestica	MD03G1023500.v1.1 MD11G1028600.v1.1
prunus_persica	Prupe.6G022700_v2.0.a1 Prupe.6G022700_v2.0.a1
pyrus_communis	pycom03g02010 pycom11g02210
rosa_chinensis	RchiOBHm_Chr5g0002291 RchiOBHm_Chr5g0077281 RchiOBHm_Chr5g0077291
rosa_laevigata	RLG00000031014 RLG00000036681 RLG00000036682
rosa_multiflora	Rmu_co8446135.1_g000001 Rmu_sc0000433.1_g000042 Rmu_sc0001492.1_g000008 Rmu_sc0005576.1_g000001 Rmu_sc0006137.1_g000009 Rmu_sc0008383.1_g000001 Rmu_sc0013155.1_g000012 Rmu_ssc0000410.1_g000040
rosa_roxburghii	Rroxscaffold_1G00004680 Rroxscaffold_1G00073650
rosa_rugosa	Rorug04G0394900 Rorug05G0453500
rosa_samantha	Rh5AG017700 Rh5AG508400 Rh5AG508500 Rh5BG020300 Rh5BG529600 Rh5CG019100 Rh5CG019400 Rh5CG554100 Rh5DG018300 Rh5DG542200
rosa_wichuraiana	Rw5G046900 Rw5G046910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AatII	GACGTC	1 cut(s)	1311
AccB7I	CCANNNNNTGG	2 cut(s)	248, 619
AccII	CGCG	1 cut(s)	510
AciI	CCGC	3 cut(s)	338, 556, 1336
AclWI	GGATC	2 cut(s)	330, 941
AcsI	RAATTY	2 cut(s)	141, 590
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	1308
AfaI	GTAC	1 cut(s)	657
AfiI	CCNNNNNNNGG	2 cut(s)	248, 619
AflII	CTTAAG	2 cut(s)	539, 992
AflIII	ACRYGT	1 cut(s)	808
AgsI	TTSAA	9 cut(s)	23, 83, 237, 535, 553, 665, 689, 935, 973
AhdI	GACNNNNNGTC	1 cut(s)	1321
AjnI	CCWGG	1 cut(s)	62
AluBI	AGCT	7 cut(s)	538, 574, 581, 839, 872, 1033, 1227
AluI	AGCT	7 cut(s)	538, 574, 581, 839, 872, 1033, 1227
Alw21I	GWGCWC	1 cut(s)	1035
Alw26I	GTCTC	2 cut(s)	1064, 1295
AlwI	GGATC	2 cut(s)	330, 941
AlwNI	CAGNNNCTG	3 cut(s)	113, 403, 1304
Ama87I	CYCGRG	3 cut(s)	1228, 1264, 1318
AoxI	GGCC	3 cut(s)	351, 1036, 1090
ApeKI	GCWGC	2 cut(s)	581, 751
ApoI	RAATTY	2 cut(s)	141, 590
AseI	ATTAAT	1 cut(s)	99
AspLEI	GCGC	2 cut(s)	512, 756
AspS9I	GGNCC	5 cut(s)	352, 889, 979, 997, 1090
AsuHPI	GGTGA	1 cut(s)	732
AvaI	CYCGRG	3 cut(s)	1228, 1264, 1318
AvaII	GGWCC	3 cut(s)	889, 979, 997
BanII	GRGCYC	1 cut(s)	1035
BauI	CACGAG	1 cut(s)	893
BbsI	GAAGAC	1 cut(s)	912
Bbv12I	GWGCWC	1 cut(s)	1035
BbvI	GCAGC	2 cut(s)	568, 738
BcgI	CGANNNNNNTGC	4 cut(s)	733, 767, 1167, 1201
BciT130I	CCWGG	1 cut(s)	64
BcoDI	GTCTC	2 cut(s)	1064, 1295
BfaI	CTAG	4 cut(s)	6, 266, 578, 1236
BfmI	CTRYAG	3 cut(s)	582, 672, 1244
BfrI	CTTAAG	2 cut(s)	539, 992
BglII	AGATCT	1 cut(s)	486
BisI	GCNGC	3 cut(s)	582, 752, 1337
BlsI	GCNGC	3 cut(s)	583, 753, 1338
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	3 cut(s)	889, 979, 997
BmeRI	GACNNNNNGTC	1 cut(s)	1321
BmeT110I	CYCGRG	3 cut(s)	1228, 1264, 1318
BmgT120I	GGNCC	5 cut(s)	352, 889, 979, 997, 1090
BmiI	GGNNCC	2 cut(s)	981, 1091
BmrFI	CCNGG	1 cut(s)	64
BmrI	ACTGGG	1 cut(s)	1209
BmsI	GCATC	3 cut(s)	202, 403, 438
BmuI	ACTGGG	1 cut(s)	1209
BoxI	GACNNNNGTC	2 cut(s)	1266, 1307
BpiI	GAAGAC	1 cut(s)	912
Bsa29I	ATCGAT	1 cut(s)	1187
BsaBI	GATNNNNATC	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	1308
BsaI	GGTCTC	1 cut(s)	1064
BsaJI	CCNNGG	1 cut(s)	62
BsaWI	WCCGGW	1 cut(s)	1129
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 619
Bse1I	ACTGG	2 cut(s)	910, 1204
Bse3DI	GCAATG	2 cut(s)	260, 594
Bse8I	GATNNNNATC	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	64
BseCI	ATCGAT	1 cut(s)	1187
BseDI	CCNNGG	1 cut(s)	62
BseGI	GGATG	2 cut(s)	193, 418
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	2 cut(s)	248, 619
BseMI	GCAATG	2 cut(s)	260, 594
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	2 cut(s)	910, 1204
BseXI	GCAGC	2 cut(s)	568, 738
BseYI	CCCAGC	2 cut(s)	176, 868
BsgI	GTGCAG	1 cut(s)	1227
Bsh1236I	CGCG	1 cut(s)	510
BshFI	GGCC	3 cut(s)	353, 1038, 1092
BshVI	ATCGAT	1 cut(s)	1187
BsiHKAI	GWGCWC	1 cut(s)	1035
BsiHKCI	CYCGRG	3 cut(s)	1228, 1264, 1318
BsiSI	CCGG	2 cut(s)	977, 1130
BslFI	GGGAC	2 cut(s)	1274, 1328
BslI	CCNNNNNNNGG	2 cut(s)	248, 619
BsmAI	GTCTC	2 cut(s)	1064, 1295
BsmFI	GGGAC	2 cut(s)	1274, 1328
BsmI	GAATGC	1 cut(s)	548
BsnI	GGCC	3 cut(s)	353, 1038, 1092
Bso31I	GGTCTC	1 cut(s)	1064
BsoBI	CYCGRG	3 cut(s)	1228, 1264, 1318
Bsp1286I	GDGCHC	1 cut(s)	1035
BspACI	CCGC	3 cut(s)	338, 556, 1336
BspANI	GGCC	3 cut(s)	353, 1038, 1092
BspCNI	CTCAG	1 cut(s)	475
BspDI	ATCGAT	1 cut(s)	1187
BspFNI	CGCG	1 cut(s)	510
BspHI	TCATGA	2 cut(s)	625, 787
BspLI	GGNNCC	2 cut(s)	981, 1091
BspMAI	CTGCAG	2 cut(s)	586, 1248
BspPI	GGATC	2 cut(s)	330, 941
BspTI	CTTAAG	2 cut(s)	539, 992
BspTNI	GGTCTC	1 cut(s)	1064
BsrDI	GCAATG	2 cut(s)	260, 594
BsrI	ACTGG	2 cut(s)	910, 1204
BssECI	CCNNGG	1 cut(s)	62
BssNI	GRCGYC	1 cut(s)	1308
BssSI	CACGAG	1 cut(s)	893
Bst2BI	CACGAG	1 cut(s)	893
Bst2UI	CCWGG	1 cut(s)	64
Bst4CI	ACNGT	3 cut(s)	17, 655, 683
Bst6I	CTCTTC	2 cut(s)	936, 974
BstACI	GRCGYC	1 cut(s)	1308
BstAFI	CTTAAG	2 cut(s)	539, 992
BstC8I	GCNNGC	1 cut(s)	460
BstDEI	CTNAG	1 cut(s)	483
BstEII	GGTNACC	1 cut(s)	863
BstF5I	GGATG	2 cut(s)	193, 418
BstFNI	CGCG	1 cut(s)	510
BstHHI	GCGC	2 cut(s)	512, 756
BstMAI	GTCTC	2 cut(s)	1064, 1295
BstNI	CCWGG	1 cut(s)	64
BstNSI	RCATGY	1 cut(s)	176
BstPAI	GACNNNNGTC	2 cut(s)	1266, 1307
BstPI	GGTNACC	1 cut(s)	863
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	3 cut(s)	582, 672, 1244
BstUI	CGCG	1 cut(s)	510
BstV1I	GCAGC	2 cut(s)	568, 738
BstV2I	GAAGAC	1 cut(s)	912
BstX2I	RGATCY	2 cut(s)	486, 946
BstYI	RGATCY	2 cut(s)	486, 946
Bsu15I	ATCGAT	1 cut(s)	1187
BsuRI	GGCC	3 cut(s)	353, 1038, 1092
BsuTUI	ATCGAT	1 cut(s)	1187
BtgZI	GCGATG	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	193, 418
BtsIMutI	CAGTG	2 cut(s)	22, 688
Cac8I	GCNNGC	1 cut(s)	460
CaiI	CAGNNNCTG	3 cut(s)	113, 403, 1304
CciI	TCATGA	2 cut(s)	625, 787
CfoI	GCGC	2 cut(s)	512, 756
Cfr13I	GGNCC	5 cut(s)	352, 889, 979, 997, 1090
ClaI	ATCGAT	1 cut(s)	1187
CseI	GACGC	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	656
CviAII	CATG	5 cut(s)	173, 248, 408, 626, 788
CviQI	GTAC	1 cut(s)	656
DdeI	CTNAG	1 cut(s)	483
DriI	GACNNNNNGTC	1 cut(s)	1321
Eam1104I	CTCTTC	2 cut(s)	936, 974
Eam1105I	GACNNNNNGTC	1 cut(s)	1321
EarI	CTCTTC	2 cut(s)	936, 974
EciI	GGCGGA	1 cut(s)	327
Ecl136II	GAGCTC	1 cut(s)	1033
Eco24I	GRGCYC	1 cut(s)	1035
Eco31I	GGTCTC	1 cut(s)	1064
Eco47I	GGWCC	3 cut(s)	889, 979, 997
Eco53kI	GAGCTC	1 cut(s)	1033
Eco57I	CTGAAG	1 cut(s)	90
Eco88I	CYCGRG	3 cut(s)	1228, 1264, 1318
Eco91I	GGTNACC	1 cut(s)	863
EcoICRI	GAGCTC	1 cut(s)	1033
EcoO65I	GGTNACC	1 cut(s)	863
EcoRII	CCWGG	1 cut(s)	62
EcoT38I	GRGCYC	1 cut(s)	1035
FaeI	CATG	5 cut(s)	176, 251, 411, 629, 791
FalI	AAGNNNNNCTT	2 cut(s)	945, 977
FaqI	GGGAC	2 cut(s)	1274, 1328
FatI	CATG	5 cut(s)	172, 247, 407, 625, 787
Fnu4HI	GCNGC	3 cut(s)	582, 752, 1337
FokI	GGATG	2 cut(s)	200, 425
FriOI	GRGCYC	1 cut(s)	1035
Fsp4HI	GCNGC	3 cut(s)	582, 752, 1337
FspBI	CTAG	4 cut(s)	6, 266, 578, 1236
GlaI	GCGC	2 cut(s)	511, 755
GluI	GCNGC	3 cut(s)	582, 752, 1337
GsaI	CCCAGC	2 cut(s)	180, 872
HaeIII	GGCC	3 cut(s)	353, 1038, 1092
HapII	CCGG	2 cut(s)	977, 1130
HgaI	GACGC	1 cut(s)	261
HhaI	GCGC	2 cut(s)	512, 756
Hin1I	GRCGYC	1 cut(s)	1308
Hin1II	CATG	5 cut(s)	176, 251, 411, 629, 791
Hin6I	GCGC	2 cut(s)	510, 754
HinP1I	GCGC	2 cut(s)	510, 754
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	7 cut(s)	110, 206, 499, 759, 781, 1262, 1316
HpaII	CCGG	2 cut(s)	977, 1130
HphI	GGTGA	1 cut(s)	732
Hpy166II	GTNNAC	3 cut(s)	445, 610, 915
Hpy188I	TCNGA	8 cut(s)	109, 115, 399, 496, 1197, 1272, 1300, 1332
Hpy188III	TCNNGA	9 cut(s)	80, 210, 532, 626, 788, 881, 935, 950, 1236
Hpy8I	GTNNAC	3 cut(s)	445, 610, 915
Hpy99I	CGWCG	3 cut(s)	1058, 1115, 1313
HpyAV	CCTTC	2 cut(s)	196, 785
HpyCH4III	ACNGT	3 cut(s)	17, 655, 683
HpyCH4IV	ACGT	3 cut(s)	85, 808, 1308
HpyCH4V	TGCA	3 cut(s)	584, 1208, 1246
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	3 cut(s)	85, 808, 1308
Hsp92I	GRCGYC	1 cut(s)	1308
Hsp92II	CATG	5 cut(s)	176, 251, 411, 629, 791
HspAI	GCGC	2 cut(s)	510, 754
LmnI	GCTCC	2 cut(s)	260, 898
Lsp1109I	GCAGC	2 cut(s)	568, 738
LweI	GCATC	3 cut(s)	202, 403, 438
MaeI	CTAG	4 cut(s)	6, 266, 578, 1236
MaeII	ACGT	3 cut(s)	85, 808, 1308
MaeIII	GTNAC	2 cut(s)	706, 863
MflI	RGATCY	2 cut(s)	486, 946
MhlI	GDGCHC	1 cut(s)	1035
MluCI	AATT	8 cut(s)	23, 96, 100, 141, 525, 590, 644, 798
MlyI	GAGTC	2 cut(s)	1256, 1310
MmeI	TCCRAC	2 cut(s)	867, 1310
MspA1I	CMGCKG	1 cut(s)	872
MspCI	CTTAAG	2 cut(s)	539, 992
MspI	CCGG	2 cut(s)	977, 1130
MspR9I	CCNGG	1 cut(s)	64
Mva1269I	GAATGC	1 cut(s)	548
MvaI	CCWGG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	510
NlaIII	CATG	5 cut(s)	176, 251, 411, 629, 791
NlaIV	GGNNCC	2 cut(s)	981, 1091
NmeAIII	GCCGAG	2 cut(s)	1014, 1118
NmuCI	GTSAC	1 cut(s)	706
NspI	RCATGY	1 cut(s)	176
PaeR7I	CTCGAG	1 cut(s)	1228
PagI	TCATGA	2 cut(s)	625, 787
PcsI	WCGNNNNNNNCGW	2 cut(s)	82, 1059
PctI	GAATGC	1 cut(s)	548
PfeI	GAWTC	5 cut(s)	110, 206, 499, 759, 781
PflMI	CCANNNNNTGG	2 cut(s)	248, 619
PkrI	GCNGC	3 cut(s)	583, 753, 1338
PleI	GAGTC	2 cut(s)	1256, 1310
PpsI	GAGTC	2 cut(s)	1256, 1310
PshAI	GACNNNNGTC	2 cut(s)	1266, 1307
PshBI	ATTAAT	1 cut(s)	99
PsiI	TTATAA	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	1035
Psp6I	CCWGG	1 cut(s)	62
PspEI	GGTNACC	1 cut(s)	863
PspFI	CCCAGC	2 cut(s)	176, 868
PspGI	CCWGG	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	981, 1091
PspPI	GGNCC	5 cut(s)	352, 889, 979, 997, 1090
PspXI	VCTCGAGB	1 cut(s)	1228
PstI	CTGCAG	2 cut(s)	586, 1248
PstNI	CAGNNNCTG	3 cut(s)	113, 403, 1304
PsuI	RGATCY	2 cut(s)	486, 946
PvuII	CAGCTG	1 cut(s)	872
RsaI	GTAC	1 cut(s)	657
RsaNI	GTAC	1 cut(s)	656
SacI	GAGCTC	1 cut(s)	1035
SatI	GCNGC	3 cut(s)	582, 752, 1337
Sau96I	GGNCC	5 cut(s)	352, 889, 979, 997, 1090
SchI	GAGTC	2 cut(s)	1256, 1310
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	1035
SfaNI	GCATC	3 cut(s)	202, 403, 438
SfcI	CTRYAG	3 cut(s)	582, 672, 1244
Sfr274I	CTCGAG	1 cut(s)	1228
SinI	GGWCC	3 cut(s)	889, 979, 997
SlaI	CTCGAG	1 cut(s)	1228
SmlI	CTYRAG	3 cut(s)	539, 992, 1228
SmoI	CTYRAG	3 cut(s)	539, 992, 1228
Sse9I	AATT	8 cut(s)	23, 96, 100, 141, 525, 590, 644, 798
SsiI	CCGC	3 cut(s)	338, 556, 1336
SspMI	CTAG	4 cut(s)	6, 266, 578, 1236
SstI	GAGCTC	1 cut(s)	1035
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	3 cut(s)	17, 655, 683
TaiI	ACGT	3 cut(s)	88, 811, 1311
TaqI	TCGA	7 cut(s)	68, 223, 325, 372, 1077, 1187, 1229
TaqII	GACCGA	1 cut(s)	1046
TasI	AATT	8 cut(s)	23, 96, 100, 141, 525, 590, 644, 798
TatI	WGTACW	1 cut(s)	655
TauI	GCSGC	1 cut(s)	1339
TfiI	GAWTC	5 cut(s)	110, 206, 499, 759, 781
TscAI	CASTG	2 cut(s)	22, 688
TseFI	GTSAC	1 cut(s)	706
TseI	GCWGC	2 cut(s)	581, 751
Tsp45I	GTSAC	1 cut(s)	706
TspDTI	ATGAA	7 cut(s)	108, 377, 583, 776, 804, 1086, 1106
TspRI	CASTG	2 cut(s)	22, 688
Van91I	CCANNNNNTGG	2 cut(s)	248, 619
Vha464I	CTTAAG	2 cut(s)	539, 992
VpaK11BI	GGWCC	3 cut(s)	889, 979, 997
VspI	ATTAAT	1 cut(s)	99
XapI	RAATTY	2 cut(s)	141, 590
XbaI	TCTAGA	1 cut(s)	1235
XceI	RCATGY	1 cut(s)	176
XhoI	CTCGAG	1 cut(s)	1228
XspI	CTAG	4 cut(s)	6, 266, 578, 1236
ZraI	GACGTC	1 cut(s)	1309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.