Rmu_ssc0000435.1_g000001

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000435.1
OG0002292
Physical Location & Seq
Forward (+)
12 .. 923
912 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 912 bp
atggcacaacaggcccatcaagagcaggtggctctgacagcaatagatatagtccatcctagttctgatgcacctttacttaatcagaatcataaccaattggcacaacaggcccatcaagagcaggtggctctgacagcaatagatatagtccatcctagttctgatgtgccttcacttaatcagaatcataaccaaatagcaccacagaccactcaagaacagccaaataatgtggcttcgacaacattagctccagtccatcctgtttctgctcaaatcactggctctcctagtcagaaccgcactcaaattggatcacagactgatcaagaggagctagacgatatggagtacttcaaattcaaaaagggtatagaccccgttgataatgcacgtaccgcgctgttagttatagctgtattagtggctacagcgagctatgaaattgcactcaaccctccaggcggtctttggtctgacacaaacttgagcacaaatggcactgagccaccacaccttgcagggacttccaatatagcttcttattttccagtttacaccatctttggagccattttaaactgcattgggttttcagtttctcttcacatgatctatgtcctcacaaccaatttccccttgcggttggagcttattgtttgtggccttgcaatgtacgtaactttcatcaatggattgattactatttctccaggtgagaccgcaggttggtactcactgtttgcacttacgccagctttgcctccggtggtactatttgctgccagaagggttaggaaacttttgatcaagcttagagaccttgctgccagaaaggttgggaaactttggatcaagcttaaaacccttccaattagccggtggccgaaattgagtagattcatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_3 Ank_4 PGG

Protein Analysis

303

Amino Acids

33.11

Weight (kDa)

6.75

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 130 - 213 2.9e-12 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 16, 115
Acc36I ACCTGC 3 cut(s) 16, 115, 719
AccII CGCG 1 cut(s) 404
AciI CCGC 5 cut(s) 304, 402, 468, 646, 726
AclWI GGATC 2 cut(s) 325, 863
AcoI YGGCCR 1 cut(s) 887
AcsI RAATTY 1 cut(s) 362
AfaI GTAC 5 cut(s) 356, 400, 680, 737, 777
AfiI CCNNNNNNNGG 2 cut(s) 467, 732
AgsI TTSAA 2 cut(s) 361, 367
AjnI CCWGG 2 cut(s) 463, 715
AluBI AGCT 9 cut(s) 254, 340, 419, 441, 542, 655, 761, 817, 862
AluI AGCT 9 cut(s) 254, 340, 419, 441, 542, 655, 761, 817, 862
Alw21I GWGCWC 1 cut(s) 497
Alw26I GTCTC 2 cut(s) 716, 816
AlwI GGATC 2 cut(s) 325, 863
AoxI GGCC 4 cut(s) 12, 111, 667, 887
ApeKI GCWGC 2 cut(s) 785, 830
ApoI RAATTY 1 cut(s) 362
AspLEI GCGC 1 cut(s) 406
AspS9I GGNCC 2 cut(s) 13, 112
AsuHPI GGTGA 1 cut(s) 731
Bbv12I GWGCWC 1 cut(s) 497
BbvI GCAGC 2 cut(s) 772, 817
BccI CCATC 6 cut(s) 24, 63, 123, 162, 270, 572
BciT130I CCWGG 2 cut(s) 465, 717
BclI TGATCA 2 cut(s) 328, 810
BcoDI GTCTC 2 cut(s) 716, 816
BfaI CTAG 4 cut(s) 60, 159, 294, 341
BfmI CTRYAG 1 cut(s) 432
BfuAI ACCTGC 3 cut(s) 16, 115, 719
BisI GCNGC 2 cut(s) 786, 831
BlsI GCNGC 2 cut(s) 787, 832
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 2 cut(s) 465, 717
BmgT120I GGNCC 2 cut(s) 13, 112
BmiI GGNNCC 1 cut(s) 574
BmrFI CCNGG 2 cut(s) 465, 717
BmsI GCATC 1 cut(s) 58
BpmI CTGGAG 3 cut(s) 240, 447, 699
BpuEI CTTGAG 2 cut(s) 201, 511
BsaAI YACGTR 2 cut(s) 398, 682
BsaI GGTCTC 2 cut(s) 716, 816
BsaWI WCCGGW 1 cut(s) 769
BsaXI ACNNNNNCTCC 6 cut(s) 238, 268, 274, 304, 697, 727
Bsc4I CCNNNNNNNGG 2 cut(s) 467, 732
Bse118I RCCGGY 1 cut(s) 882
Bse1I ACTGG 3 cut(s) 257, 289, 554
Bse3DI GCAATG 1 cut(s) 681
BseBI CCWGG 2 cut(s) 465, 717
BseGI GGATG 3 cut(s) 55, 154, 262
BseLI CCNNNNNNNGG 2 cut(s) 467, 732
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 1 cut(s) 498
BseNI ACTGG 3 cut(s) 257, 289, 554
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 2 cut(s) 772, 817
Bsh1236I CGCG 1 cut(s) 404
BshFI GGCC 4 cut(s) 14, 113, 669, 889
BsiHKAI GWGCWC 1 cut(s) 497
BsiSI CCGG 2 cut(s) 770, 883
BslFI GGGAC 1 cut(s) 541
BslI CCNNNNNNNGG 2 cut(s) 467, 732
BsmAI GTCTC 2 cut(s) 716, 816
BsmFI GGGAC 1 cut(s) 541
BsnI GGCC 4 cut(s) 14, 113, 669, 889
Bso31I GGTCTC 2 cut(s) 716, 816
Bsp1286I GDGCHC 1 cut(s) 497
Bsp143I GATC 5 cut(s) 317, 328, 615, 810, 855
BspACI CCGC 5 cut(s) 304, 402, 468, 646, 726
BspANI GGCC 4 cut(s) 14, 113, 669, 889
BspCNI CTCAG 1 cut(s) 499
BspFNI CGCG 1 cut(s) 404
BspLI GGNNCC 1 cut(s) 574
BspMI ACCTGC 3 cut(s) 16, 115, 719
BspPI GGATC 2 cut(s) 325, 863
BspTNI GGTCTC 2 cut(s) 716, 816
BsrDI GCAATG 1 cut(s) 681
BsrFI RCCGGY 1 cut(s) 882
BsrI ACTGG 3 cut(s) 257, 289, 554
BssAI RCCGGY 1 cut(s) 882
BssMI GATC 5 cut(s) 317, 328, 615, 810, 855
Bst2UI CCWGG 2 cut(s) 465, 717
Bst4CI ACNGT 1 cut(s) 744
Bst6I CTCTTC 1 cut(s) 612
BstBAI YACGTR 2 cut(s) 398, 682
BstC8I GCNNGC 2 cut(s) 439, 759
BstDEI CTNAG 2 cut(s) 507, 818
BstF5I GGATG 3 cut(s) 55, 154, 262
BstFNI CGCG 1 cut(s) 404
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 5 cut(s) 320, 331, 618, 813, 858
BstMAI GTCTC 2 cut(s) 716, 816
BstMBI GATC 5 cut(s) 317, 328, 615, 810, 855
BstMWI GCNNNNNNNGC 8 cut(s) 11, 38, 110, 137, 401, 501, 652, 763
BstNI CCWGG 2 cut(s) 465, 717
BstSCI CCNGG 2 cut(s) 463, 715
BstSFI CTRYAG 1 cut(s) 432
BstSNI TACGTA 1 cut(s) 682
BstUI CGCG 1 cut(s) 404
BstV1I GCAGC 2 cut(s) 772, 817
BsuRI GGCC 4 cut(s) 14, 113, 669, 889
BtsCI GGATG 3 cut(s) 55, 154, 262
BtsIMutI CAGTG 3 cut(s) 282, 504, 740
BveI ACCTGC 3 cut(s) 16, 115, 719
Cac8I GCNNGC 2 cut(s) 439, 759
CfoI GCGC 1 cut(s) 406
Cfr10I RCCGGY 1 cut(s) 882
Cfr13I GGNCC 2 cut(s) 13, 112
Csp6I GTAC 5 cut(s) 355, 399, 679, 736, 776
CspCI CAANNNNNGTGG 2 cut(s) 216, 251
CviAII CATG 1 cut(s) 613
CviQI GTAC 5 cut(s) 355, 399, 679, 736, 776
DdeI CTNAG 2 cut(s) 507, 818
DpnI GATC 5 cut(s) 319, 330, 617, 812, 857
DpnII GATC 5 cut(s) 317, 328, 615, 810, 855
DraI TTTAAA 1 cut(s) 582
EaeI YGGCCR 1 cut(s) 887
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
Eco105I TACGTA 1 cut(s) 682
Eco31I GGTCTC 2 cut(s) 716, 816
EcoRII CCWGG 2 cut(s) 463, 715
FaeI CATG 1 cut(s) 616
FaqI GGGAC 1 cut(s) 541
FatI CATG 1 cut(s) 612
FbaI TGATCA 2 cut(s) 328, 810
Fnu4HI GCNGC 2 cut(s) 786, 831
FokI GGATG 3 cut(s) 42, 141, 249
Fsp4HI GCNGC 2 cut(s) 786, 831
FspBI CTAG 4 cut(s) 60, 159, 294, 341
GlaI GCGC 1 cut(s) 405
GluI GCNGC 2 cut(s) 786, 831
GsuI CTGGAG 3 cut(s) 240, 447, 699
HaeIII GGCC 4 cut(s) 14, 113, 669, 889
HapII CCGG 2 cut(s) 770, 883
HhaI GCGC 1 cut(s) 406
Hin1II CATG 1 cut(s) 616
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HindIII AAGCTT 2 cut(s) 815, 860
HinfI GANTC 3 cut(s) 88, 187, 903
HpaII CCGG 2 cut(s) 770, 883
HphI GGTGA 1 cut(s) 731
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 8 cut(s) 36, 67, 87, 135, 166, 186, 300, 481
Hpy188III TCNNGA 4 cut(s) 20, 119, 218, 332
Hpy8I GTNNAC 1 cut(s) 559
HpyAV CCTTC 3 cut(s) 183, 786, 881
HpyCH4III ACNGT 1 cut(s) 744
HpyCH4IV ACGT 2 cut(s) 397, 681
HpyCH4V TGCA 7 cut(s) 71, 395, 452, 524, 588, 674, 749
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 38, 110, 137, 401, 501, 652, 763
HpyF3I CTNAG 2 cut(s) 507, 818
HpySE526I ACGT 2 cut(s) 397, 681
Hsp92II CATG 1 cut(s) 616
HspAI GCGC 1 cut(s) 404
Ksp22I TGATCA 2 cut(s) 328, 810
Kzo9I GATC 5 cut(s) 317, 328, 615, 810, 855
LmnI GCTCC 4 cut(s) 259, 337, 572, 652
Lsp1109I GCAGC 2 cut(s) 772, 817
LweI GCATC 1 cut(s) 58
MaeI CTAG 4 cut(s) 60, 159, 294, 341
MaeII ACGT 2 cut(s) 397, 681
MaeIII GTNAC 1 cut(s) 682
MalI GATC 5 cut(s) 319, 330, 617, 812, 857
MboI GATC 5 cut(s) 317, 328, 615, 810, 855
MboII GAAGA 1 cut(s) 599
MfeI CAATTG 1 cut(s) 98
MhlI GDGCHC 1 cut(s) 497
MluCI AATT 7 cut(s) 98, 312, 362, 447, 634, 876, 893
MmeI TCCRAC 1 cut(s) 630
MnlI CCTC 4 cut(s) 328, 471, 635, 777
MseI TTAA 5 cut(s) 81, 180, 581, 864, 910
MspI CCGG 2 cut(s) 770, 883
MspR9I CCNGG 2 cut(s) 465, 717
MunI CAATTG 1 cut(s) 98
MvaI CCWGG 2 cut(s) 465, 717
MvnI CGCG 1 cut(s) 404
MwoI GCNNNNNNNGC 8 cut(s) 11, 38, 110, 137, 401, 501, 652, 763
NdeII GATC 5 cut(s) 317, 328, 615, 810, 855
NlaIII CATG 1 cut(s) 616
NlaIV GGNNCC 1 cut(s) 574
PaqCI CACCTGC 2 cut(s) 16, 115
PfeI GAWTC 3 cut(s) 88, 187, 903
PkrI GCNGC 2 cut(s) 787, 832
Ppu21I YACGTR 2 cut(s) 398, 682
Psp6I CCWGG 2 cut(s) 463, 715
PspGI CCWGG 2 cut(s) 463, 715
PspN4I GGNNCC 1 cut(s) 574
PspPI GGNCC 2 cut(s) 13, 112
RsaI GTAC 5 cut(s) 356, 400, 680, 737, 777
RsaNI GTAC 5 cut(s) 355, 399, 679, 736, 776
SaqAI TTAA 5 cut(s) 81, 180, 581, 864, 910
SatI GCNGC 2 cut(s) 786, 831
Sau3AI GATC 5 cut(s) 317, 328, 615, 810, 855
Sau96I GGNCC 2 cut(s) 13, 112
ScaI AGTACT 1 cut(s) 356
ScrFI CCNGG 2 cut(s) 465, 717
SduI GDGCHC 1 cut(s) 497
SfaNI GCATC 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 432
SmlI CTYRAG 2 cut(s) 216, 490
SmoI CTYRAG 2 cut(s) 216, 490
SnaBI TACGTA 1 cut(s) 682
Sse9I AATT 7 cut(s) 98, 312, 362, 447, 634, 876, 893
SsiI CCGC 5 cut(s) 304, 402, 468, 646, 726
SspMI CTAG 4 cut(s) 60, 159, 294, 341
StyD4I CCNGG 2 cut(s) 463, 715
TaaI ACNGT 1 cut(s) 744
TaiI ACGT 2 cut(s) 400, 684
TaqI TCGA 1 cut(s) 242
TasI AATT 7 cut(s) 98, 312, 362, 447, 634, 876, 893
TatI WGTACW 1 cut(s) 354
TfiI GAWTC 3 cut(s) 88, 187, 903
Tru1I TTAA 5 cut(s) 81, 180, 581, 864, 910
Tru9I TTAA 5 cut(s) 81, 180, 581, 864, 910
TscAI CASTG 3 cut(s) 289, 511, 747
TseI GCWGC 2 cut(s) 785, 830
TspDTI ATGAA 3 cut(s) 459, 679, 895
TspRI CASTG 3 cut(s) 289, 511, 747
XapI RAATTY 1 cut(s) 362
XcmI CCANNNNNNNNNTGG 2 cut(s) 471, 882
XspI CTAG 4 cut(s) 60, 159, 294, 341
ZrmI AGTACT 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.