AT1G01020

Protein arv1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001502
Physical Location & Seq
Reverse (-)
6788 .. 9130
2343 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01020.5

Sequence Viewer

Length: 738 bp
ATGGCGGCGAGTGAACACAGATGCGTGGGATGTGGTTTTAGGGTAAAGTCATTGTTCATTCAATACTCTCCGGGTAACATTCGTCTCATGAAATGCGGAAATTGCAAGGAAGTAGCAGATGAGTACATCGAGTGTGAACGCATGATTATTTTCATCGATTTAATCCTTCACAGACCAAAGGTATATAGACACGTCCTCTACAATGCAATTAATCCAGCAACTGTCAATATTCAGCATCTGTTGTGGAAGTTGGTCTTCGCCTATCTTCTTCTAGACTGTTATAGAAGCTTGCTACTGAGAAAAAGTGATGAAGAATCGAGCTTTTCTGATAGCCCTGTTCTTCTATCTATAAAGGTTCTGATTGGTGTCTTATCTGCAAACGCTGCATTTATCATCTCTTTTGCCATTGCGACTAAGGGTTTGCTAAATGAAGTTTCCAGAAGAAGAGAGATTATGTTGGGGATATTCATCTCTAGTTACTTCAAGATATTTCTGCTTGCGATGTTGGTATGGGAATTCCCAATGTCAGTGATTTTTTTTGTCGATATACTTCTCTTAACATCAAACTCCATGGCTCTTAAAGTGATGACTGAATCAACAATGACCAGATGCATAGCCGTATGCTTAATCGCGCACTTGATTAGATTCTTGGTGGGTCAGATTTTTGAGCCGACAATATTTTTGATACAAATTGGATCTCTGTTGCAATATATGTCTTATTTTTTCAGAATCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arv1

Protein Analysis

245

Amino Acids

28.09

Weight (kDa)

8.91

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arv1 PF04161 1 - 146 3e-25 Arv1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 632
AciI CCGC 2 cut(s) 5, 96
AclWI GGATC 1 cut(s) 703
AcsI RAATTY 1 cut(s) 515
AfaI GTAC 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 2 cut(s) 62, 484
AjiI CACGTC 1 cut(s) 193
AluBI AGCT 2 cut(s) 288, 321
AluI AGCT 2 cut(s) 288, 321
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 1 cut(s) 703
AlwNI CAGNNNCTG 2 cut(s) 221, 238
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 1 cut(s) 515
ArsI GACNNNNNNTTYG 4 cut(s) 403, 435, 664, 696
AseI ATTAAT 1 cut(s) 210
AspLEI GCGC 1 cut(s) 634
AsuC2I CCSGG 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 247
BbvI GCAGC 1 cut(s) 370
BceAI ACGGC 1 cut(s) 602
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 2 cut(s) 272, 474
BisI GCNGC 2 cut(s) 6, 384
BlsI GCNGC 2 cut(s) 7, 385
Bme1390I CCNGG 1 cut(s) 72
BmgBI CACGTC 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 72
BmsI GCATC 3 cut(s) 11, 244, 599
BpiI GAAGAC 1 cut(s) 247
BpuMI CCSGG 1 cut(s) 72
Bsa29I ATCGAT 1 cut(s) 156
BsaBI GATNNNNATC 1 cut(s) 467
BsaJI CCNNGG 1 cut(s) 570
Bse3DI GCAATG 1 cut(s) 405
Bse8I GATNNNNATC 1 cut(s) 467
BseCI ATCGAT 1 cut(s) 156
BseDI CCNNGG 1 cut(s) 570
BseGI GGATG 1 cut(s) 35
BseJI GATNNNNATC 1 cut(s) 467
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 370
Bsh1236I CGCG 1 cut(s) 632
BshVI ATCGAT 1 cut(s) 156
BsiSI CCGG 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 89
BsmBI CGTCTC 1 cut(s) 89
Bsp143I GATC 1 cut(s) 695
Bsp19I CCATGG 1 cut(s) 570
BspACI CCGC 2 cut(s) 5, 96
BspCNI CTCAG 1 cut(s) 288
BspDI ATCGAT 1 cut(s) 156
BspFNI CGCG 1 cut(s) 632
BspHI TCATGA 1 cut(s) 87
BspPI GGATC 1 cut(s) 703
BsrDI GCAATG 1 cut(s) 405
BssECI CCNNGG 1 cut(s) 570
BssMI GATC 1 cut(s) 695
BssT1I CCWWGG 1 cut(s) 570
Bst4CI ACNGT 2 cut(s) 223, 278
Bst6I CTCTTC 1 cut(s) 439
BstAPI GCANNNNNTGC 1 cut(s) 383
BstC8I GCNNGC 2 cut(s) 290, 498
BstDEI CTNAG 2 cut(s) 296, 414
BstDSI CCRYGG 1 cut(s) 570
BstF5I GGATG 1 cut(s) 35
BstFNI CGCG 1 cut(s) 632
BstHHI GCGC 1 cut(s) 634
BstKTI GATC 1 cut(s) 698
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 1 cut(s) 695
BstMWI GCNNNNNNNGC 2 cut(s) 102, 383
BstSCI CCNGG 1 cut(s) 70
BstUI CGCG 1 cut(s) 632
BstV1I GCAGC 1 cut(s) 370
BstV2I GAAGAC 1 cut(s) 247
BstX2I RGATCY 1 cut(s) 695
BstYI RGATCY 1 cut(s) 695
Bsu15I ATCGAT 1 cut(s) 156
BsuTUI ATCGAT 1 cut(s) 156
BtgI CCRYGG 1 cut(s) 570
BtgZI GCGATG 1 cut(s) 515
BtrI CACGTC 1 cut(s) 193
BtsCI GGATG 1 cut(s) 35
BtsIMutI CAGTG 1 cut(s) 534
Cac8I GCNNGC 2 cut(s) 290, 498
CaiI CAGNNNCTG 2 cut(s) 221, 238
CciI TCATGA 1 cut(s) 87
CfoI GCGC 1 cut(s) 634
ClaI ATCGAT 1 cut(s) 156
Csp6I GTAC 1 cut(s) 124
CviAII CATG 3 cut(s) 88, 142, 571
CviJI RGCY 6 cut(s) 288, 321, 333, 575, 617, 670
CviKI_1 RGCY 6 cut(s) 288, 321, 333, 575, 617, 670
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 2 cut(s) 296, 414
DpnI GATC 1 cut(s) 697
DpnII GATC 1 cut(s) 695
Eam1104I CTCTTC 1 cut(s) 439
EarI CTCTTC 1 cut(s) 439
Eco130I CCWWGG 1 cut(s) 570
EcoRI GAATTC 1 cut(s) 515
EcoT14I CCWWGG 1 cut(s) 570
EcoT22I ATGCAT 1 cut(s) 614
ErhI CCWWGG 1 cut(s) 570
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 3 cut(s) 91, 145, 574
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FatI CATG 3 cut(s) 87, 141, 570
Fnu4HI GCNGC 2 cut(s) 6, 384
FokI GGATG 1 cut(s) 42
Fsp4HI GCNGC 2 cut(s) 6, 384
FspBI CTAG 2 cut(s) 272, 474
GlaI GCGC 1 cut(s) 633
GluI GCNGC 2 cut(s) 6, 384
HapII CCGG 1 cut(s) 71
HhaI GCGC 1 cut(s) 634
Hin1II CATG 3 cut(s) 91, 145, 574
Hin6I GCGC 1 cut(s) 632
HinP1I GCGC 1 cut(s) 632
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 4 cut(s) 314, 593, 645, 729
HpaII CCGG 1 cut(s) 71
Hpy166II GTNNAC 2 cut(s) 14, 137
Hpy188I TCNGA 4 cut(s) 328, 360, 660, 728
Hpy188III TCNNGA 4 cut(s) 88, 272, 438, 484
Hpy8I GTNNAC 2 cut(s) 14, 137
HpyAV CCTTC 1 cut(s) 176
HpyCH4III ACNGT 2 cut(s) 223, 278
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 6 cut(s) 105, 206, 377, 386, 612, 706
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 383
HpyF3I CTNAG 2 cut(s) 296, 414
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 3 cut(s) 91, 145, 574
HspAI GCGC 1 cut(s) 632
Kzo9I GATC 1 cut(s) 695
LpnPI CCDG 5 cut(s) 84, 228, 348, 451, 619
Lsp1109I GCAGC 1 cut(s) 370
LweI GCATC 3 cut(s) 11, 244, 599
MaeI CTAG 2 cut(s) 272, 474
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 2 cut(s) 74, 476
MalI GATC 1 cut(s) 697
MboI GATC 1 cut(s) 695
MboII GAAGA 7 cut(s) 247, 257, 260, 323, 332, 453, 456
MflI RGATCY 1 cut(s) 695
MluCI AATT 4 cut(s) 100, 207, 515, 690
MnlI CCTC 1 cut(s) 206
Mph1103I ATGCAT 1 cut(s) 614
MseI TTAA 5 cut(s) 161, 210, 557, 579, 626
MspI CCGG 1 cut(s) 71
MspR9I CCNGG 1 cut(s) 72
MvnI CGCG 1 cut(s) 632
MwoI GCNNNNNNNGC 2 cut(s) 102, 383
NciI CCSGG 1 cut(s) 72
NcoI CCATGG 1 cut(s) 570
NdeII GATC 1 cut(s) 695
NlaIII CATG 3 cut(s) 91, 145, 574
NsiI ATGCAT 1 cut(s) 614
PagI TCATGA 1 cut(s) 87
PfeI GAWTC 4 cut(s) 314, 593, 645, 729
PkrI GCNGC 2 cut(s) 7, 385
PshBI ATTAAT 1 cut(s) 210
PstNI CAGNNNCTG 2 cut(s) 221, 238
PsuI RGATCY 1 cut(s) 695
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SaqAI TTAA 5 cut(s) 161, 210, 557, 579, 626
SatI GCNGC 2 cut(s) 6, 384
Sau3AI GATC 1 cut(s) 695
ScrFI CCNGG 1 cut(s) 72
SetI ASST 5 cut(s) 183, 195, 290, 323, 357
SfaNI GCATC 3 cut(s) 11, 244, 599
Sse9I AATT 4 cut(s) 100, 207, 515, 690
SsiI CCGC 2 cut(s) 5, 96
SspI AATATT 2 cut(s) 229, 678
SspMI CTAG 2 cut(s) 272, 474
StyD4I CCNGG 1 cut(s) 70
StyI CCWWGG 1 cut(s) 570
TaaI ACNGT 2 cut(s) 223, 278
TaiI ACGT 1 cut(s) 195
TaqI TCGA 4 cut(s) 129, 156, 317, 543
TasI AATT 4 cut(s) 100, 207, 515, 690
TatI WGTACW 1 cut(s) 123
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 4 cut(s) 314, 593, 645, 729
Tru1I TTAA 5 cut(s) 161, 210, 557, 579, 626
Tru9I TTAA 5 cut(s) 161, 210, 557, 579, 626
TscAI CASTG 1 cut(s) 534
TseI GCWGC 1 cut(s) 383
TspDTI ATGAA 6 cut(s) 46, 104, 142, 324, 444, 457
TspRI CASTG 1 cut(s) 534
VspI ATTAAT 1 cut(s) 210
XapI RAATTY 1 cut(s) 515
XbaI TCTAGA 1 cut(s) 271
XspI CTAG 2 cut(s) 272, 474
Zsp2I ATGCAT 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.