Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000177

Orthogroup ID

OG0001502

Physical Location & Seq

Genomic Coordinates Reverse (-)

97604 .. 99050

Gene Structure 1447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_177G00434170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGACCGTCCTTCGCCTCCGTCCTCCTCACCGGCAAGCATTCATGCTGAGATCCATCGCCGCGGCCAACGCTGCCTCGAAGTCGGACCCAGGGATCGACGACCCCGACCCGGAGTTGAAGTCGAAGCTGATGTGCGGGCTATTTACCGGCGTCAAACTCGAGCTTGCATTGGGTGAGGTTTTTGGAGTAGACCAATCTGTTGCATTGAAACTACTGGGATCTGAAAGATCATTCGAACCTCTTAAAGGTAAGGTTCTTACACAGTCATTTAAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0006107 GO:0006108 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008746 GO:0009060 GO:0009117 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009941 GO:0009987 GO:0015980 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0016651 GO:0016652 GO:0016999 GO:0017144 GO:0019362 GO:0019637 GO:0019674 GO:0019752 GO:0030060 GO:0031967 GO:0031975 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0046483 GO:0046496 GO:0048046 GO:0050896 GO:0051186 GO:0051775 GO:0055086 GO:0055114 GO:0071704 GO:0072350 GO:0072524 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko01100 ko01120 ko01200 map00620 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Ldh_1_C Ldh_1_N

Protein Analysis

92

Amino Acids

9.96

Weight (kDa)

9.3

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01020 AT1G01020 AT1G01020 AT1G01020 AT1G01020 AT1G01020 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510
fragaria_vesca	FvH4_7g17940 FvH4_7g17940 FvH4_7g17940 FvH4_7g17940
malus_domestica	MD01G1091900.v1.1 MD07G1162500.v1.1 MD07G1162600.v1.1
prunus_persica	Prupe.2G201100_v2.0.a1 Prupe.2G201100_v2.0.a1
pyrus_communis	pycom01g11580 pycom07g15760
rosa_chinensis	RchiOBHm_Chr1g0333691 RchiOBHm_Chr1g0361381 RchiOBHm_Chr1g0361671
rosa_multiflora	Rmu_sc0002621.1_g000016
rosa_roxburghii	Rroxscaffold_177G00434170 Rroxscaffold_4G00294960 Rroxscaffold_4G00295000
rosa_rugosa	Rorug01G0289100 Rorug01G0289200 Rorug01G0289300 Rorug07G0273800
rosa_samantha	Rh1AG112400 Rh1AG133400 Rh1AG134200 Rh1AG300000 Rh1CG065800 Rh1CG066000 Rh1CG127700 Rh1CG281300 Rh1CG282000 Rh2AG320800 Rh2AG329800 Rh4AG149900 Rh4CG344500 Rh6AG000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	1 cut(s)	62
AciI	CCGC	3 cut(s)	60, 62, 135
AclWI	GGATC	3 cut(s)	45, 101, 226
AcoI	YGGCCR	1 cut(s)	63
AcyI	GRCGYC	1 cut(s)	150
AfiI	CCNNNNNNNGG	2 cut(s)	109, 245
AgsI	TTSAA	2 cut(s)	118, 208
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	2 cut(s)	127, 163
AluI	AGCT	2 cut(s)	127, 163
AlwI	GGATC	3 cut(s)	45, 101, 226
Ama87I	CYCGRG	1 cut(s)	158
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	85
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	20, 185
AsuII	TTCGAA	1 cut(s)	234
AvaI	CYCGRG	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	90
BcnI	CCSGG	1 cut(s)	110
BisI	GCNGC	3 cut(s)	60, 63, 72
BlsI	GCNGC	3 cut(s)	61, 64, 73
Bme1390I	CCNGG	2 cut(s)	90, 110
Bme18I	GGWCC	1 cut(s)	85
BmeT110I	CYCGRG	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	2 cut(s)	90, 110
BmrI	ACTGGG	1 cut(s)	224
BmuI	ACTGGG	1 cut(s)	224
Bpu14I	TTCGAA	1 cut(s)	234
BpuMI	CCSGG	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	3 cut(s)	60, 88, 89
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 245
Bse118I	RCCGGY	2 cut(s)	30, 146
Bse1I	ACTGG	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	3 cut(s)	60, 88, 89
BseLI	CCNNNNNNNGG	2 cut(s)	109, 245
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	219
BseRI	GAGGAG	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	65
BsiHKCI	CYCGRG	1 cut(s)	158
BsiSI	CCGG	3 cut(s)	31, 110, 147
BslI	CCNNNNNNNGG	2 cut(s)	109, 245
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	65
BsoBI	CYCGRG	1 cut(s)	158
Bsp119I	TTCGAA	1 cut(s)	234
Bsp143I	GATC	4 cut(s)	50, 93, 218, 227
BspACI	CCGC	3 cut(s)	60, 62, 135
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	1 cut(s)	39
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	87
BspPI	GGATC	3 cut(s)	45, 101, 226
BspT104I	TTCGAA	1 cut(s)	234
BsrFI	RCCGGY	2 cut(s)	30, 146
BsrI	ACTGG	1 cut(s)	219
BssAI	RCCGGY	2 cut(s)	30, 146
BssECI	CCNNGG	3 cut(s)	60, 88, 89
BssMI	GATC	4 cut(s)	50, 93, 218, 227
BssNI	GRCGYC	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	2 cut(s)	7, 264
BstACI	GRCGYC	1 cut(s)	150
BstBI	TTCGAA	1 cut(s)	234
BstC8I	GCNNGC	3 cut(s)	36, 137, 165
BstDEI	CTNAG	1 cut(s)	47
BstDSI	CCRYGG	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	243
BstFNI	CGCG	1 cut(s)	62
BstKTI	GATC	4 cut(s)	53, 96, 221, 230
BstMBI	GATC	4 cut(s)	50, 93, 218, 227
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 71
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	2 cut(s)	88, 108
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	58
BstX2I	RGATCY	2 cut(s)	50, 218
BstYI	RGATCY	2 cut(s)	50, 218
BsuRI	GGCC	1 cut(s)	65
BtgI	CCRYGG	1 cut(s)	60
BtgZI	GCGATG	1 cut(s)	40
Cac8I	GCNNGC	3 cut(s)	36, 137, 165
Cfr10I	RCCGGY	2 cut(s)	30, 146
Cfr13I	GGNCC	1 cut(s)	85
Cfr42I	CCGCGG	1 cut(s)	63
CseI	GACGC	1 cut(s)	139
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	4 cut(s)	65, 127, 139, 163
CviKI_1	RGCY	4 cut(s)	65, 127, 139, 163
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	4 cut(s)	52, 95, 220, 229
DpnII	GATC	4 cut(s)	50, 93, 218, 227
DraI	TTTAAA	1 cut(s)	271
EaeI	YGGCCR	1 cut(s)	63
Eco47I	GGWCC	1 cut(s)	85
Eco88I	CYCGRG	1 cut(s)	158
EcoNI	CCTNNNNNAGG	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	88
FaeI	CATG	1 cut(s)	46
FaiI	YATR	2 cut(s)	44, 277
FatI	CATG	1 cut(s)	42
FauI	CCCGC	1 cut(s)	128
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	3 cut(s)	60, 63, 72
Fsp4HI	GCNGC	3 cut(s)	60, 63, 72
GluI	GCNGC	3 cut(s)	60, 63, 72
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	3 cut(s)	31, 110, 147
HgaI	GACGC	1 cut(s)	139
Hin1I	GRCGYC	1 cut(s)	150
Hin1II	CATG	1 cut(s)	46
HpaII	CCGG	3 cut(s)	31, 110, 147
HphI	GGTGA	2 cut(s)	20, 185
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	2 cut(s)	85, 223
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	1 cut(s)	101
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	2 cut(s)	7, 264
HpyCH4V	TGCA	2 cut(s)	167, 203
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 71
HpyF3I	CTNAG	1 cut(s)	47
Hsp92I	GRCGYC	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	46
KspI	CCGCGG	1 cut(s)	63
Kzo9I	GATC	4 cut(s)	50, 93, 218, 227
LpnPI	CCDG	6 cut(s)	44, 75, 102, 123, 160, 200
Lsp1109I	GCAGC	1 cut(s)	58
MalI	GATC	4 cut(s)	52, 95, 220, 229
MboI	GATC	4 cut(s)	50, 93, 218, 227
MflI	RGATCY	2 cut(s)	50, 218
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	6 cut(s)	26, 33, 36, 85, 169, 249
MseI	TTAA	2 cut(s)	243, 270
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	3 cut(s)	31, 110, 147
MspR9I	CCNGG	2 cut(s)	90, 110
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	68, 71
NciI	CCSGG	1 cut(s)	110
NdeII	GATC	4 cut(s)	50, 93, 218, 227
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	1 cut(s)	87
NspV	TTCGAA	1 cut(s)	234
PaeR7I	CTCGAG	1 cut(s)	158
PasI	CCCWGGG	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	1 cut(s)	38
PkrI	GCNGC	3 cut(s)	61, 64, 73
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	85
PspXI	VCTCGAGB	1 cut(s)	158
PsuI	RGATCY	2 cut(s)	50, 218
SacII	CCGCGG	1 cut(s)	63
SaqAI	TTAA	2 cut(s)	243, 270
SatI	GCNGC	3 cut(s)	60, 63, 72
Sau3AI	GATC	4 cut(s)	50, 93, 218, 227
Sau96I	GGNCC	1 cut(s)	85
ScrFI	CCNGG	2 cut(s)	90, 110
SetI	ASST	6 cut(s)	129, 165, 180, 241, 250, 255
Sfr274I	CTCGAG	1 cut(s)	158
Sfr303I	CCGCGG	1 cut(s)	63
SfuI	TTCGAA	1 cut(s)	234
SgrBI	CCGCGG	1 cut(s)	63
SinI	GGWCC	1 cut(s)	85
SlaI	CTCGAG	1 cut(s)	158
SmiI	ATTTAAAT	1 cut(s)	271
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SsiI	CCGC	3 cut(s)	60, 62, 135
StyD4I	CCNGG	2 cut(s)	88, 108
SwaI	ATTTAAAT	1 cut(s)	271
TaaI	ACNGT	2 cut(s)	7, 264
TaqI	TCGA	5 cut(s)	77, 96, 122, 159, 234
TauI	GCSGC	2 cut(s)	62, 65
Tru1I	TTAA	2 cut(s)	243, 270
Tru9I	TTAA	2 cut(s)	243, 270
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	1 cut(s)	31
TspGWI	ACGGA	1 cut(s)	8
VpaK11BI	GGWCC	1 cut(s)	85
XagI	CCTNNNNNAGG	1 cut(s)	243
XhoI	CTCGAG	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.