Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001502

Physical Location & Seq

Genomic Coordinates Forward (+)

13372772 .. 13386591

Gene Structure 13820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG065800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGTGGTTGACTCGCAAGCTCCCCGCCTTTCAGGTCAGGAGATGTTCTTCTGTGATTTTGACCATTGATTTATTCATTATAAGGATTGTTTTGATTCTGCACAAGAAGAAAGCTTATACCCATTTGCTCTATAATGTGATTGACTCGCAAGCTCCCGCCTTTCAGGTCAGGAGATGTTCCTCTGTGATTTTGACCATTGATTTATTCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arv1

Protein Analysis

70

Amino Acids

8.16

Weight (kDa)

10.29

Isoelectric Point (pI)

55.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arv1	PF04161	22 - 66	1.4e-06	Arv1-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01020 AT1G01020 AT1G01020 AT1G01020 AT1G01020 AT1G01020 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510
fragaria_vesca	FvH4_7g17940 FvH4_7g17940 FvH4_7g17940 FvH4_7g17940
malus_domestica	MD01G1091900.v1.1 MD07G1162500.v1.1 MD07G1162600.v1.1
prunus_persica	Prupe.2G201100_v2.0.a1 Prupe.2G201100_v2.0.a1
pyrus_communis	pycom01g11580 pycom07g15760
rosa_chinensis	RchiOBHm_Chr1g0333691 RchiOBHm_Chr1g0361381 RchiOBHm_Chr1g0361671
rosa_multiflora	Rmu_sc0002621.1_g000016
rosa_roxburghii	Rroxscaffold_177G00434170 Rroxscaffold_4G00294960 Rroxscaffold_4G00295000
rosa_rugosa	Rorug01G0289100 Rorug01G0289200 Rorug01G0289300 Rorug07G0273800
rosa_samantha	Rh1AG112400 Rh1AG133400 Rh1AG134200 Rh1AG300000 Rh1CG065800 Rh1CG066000 Rh1CG127700 Rh1CG281300 Rh1CG282000 Rh2AG320800 Rh2AG329800 Rh4AG149900 Rh4CG344500 Rh6AG000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	80
AciI	CCGC	2 cut(s)	24, 156
AluBI	AGCT	3 cut(s)	19, 113, 152
AluI	AGCT	3 cut(s)	19, 113, 152
BsgI	GTGCAG	1 cut(s)	83
BspACI	CCGC	2 cut(s)	24, 156
BstC8I	GCNNGC	2 cut(s)	17, 150
Cac8I	GCNNGC	2 cut(s)	17, 150
CviAII	CATG	1 cut(s)	210
CviJI	RGCY	3 cut(s)	19, 113, 152
CviKI_1	RGCY	3 cut(s)	19, 113, 152
FaeI	CATG	1 cut(s)	213
FaiI	YATR	4 cut(s)	80, 117, 132, 211
FatI	CATG	1 cut(s)	209
FauI	CCCGC	2 cut(s)	31, 163
Hin1II	CATG	1 cut(s)	213
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	3 cut(s)	10, 94, 143
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188III	TCNNGA	2 cut(s)	37, 169
Hpy8I	GTNNAC	1 cut(s)	9
HpyCH4V	TGCA	1 cut(s)	100
Hsp92II	CATG	1 cut(s)	213
LmnI	GCTCC	2 cut(s)	24, 157
LpnPI	CCDG	4 cut(s)	17, 22, 149, 154
MboII	GAAGA	2 cut(s)	39, 118
MlyI	GAGTC	2 cut(s)	4, 137
MnlI	CCTC	1 cut(s)	190
NlaIII	CATG	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	94
PleI	GAGTC	2 cut(s)	4, 137
PpsI	GAGTC	2 cut(s)	4, 137
PsiI	TTATAA	1 cut(s)	80
SchI	GAGTC	2 cut(s)	4, 137
SetI	ASST	5 cut(s)	21, 36, 115, 154, 168
SsiI	CCGC	2 cut(s)	24, 156
TfiI	GAWTC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.