Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001502

Physical Location & Seq

Genomic Coordinates Forward (+)

23788189 .. 23790885

Gene Structure 2697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G201100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGAATACAGATGTGTAGAGTGCGGGGGTCGCATGACGACTCTGTTCGTCCAATACTCACCTGGCAACATTCGGCTCATGAAATGCGGAAAGTGCAAGGCAGTTGCAGATGAGTACATCGAATGCGAACCCATAATTATTCTAATTGATCTAATTTTGCACAAGACCAAAGCTTATACACATTTACTCTATAATGTGATAGACCCACAAGCTCCTTCTTTTCAGGGTTTATTGTGGAAGTCTACTTTTGGGTTTCTTCTTTTGGATGCTTATAGGAGTCTCTTTCTGGAAAGAAGTAAGGAAGAGTGGGGCTTGTCCATGAGCTTCGCGTCATTACTTTGGAGATTTCAAAAGATGCTGATGGACGTTGTCTTTGGAAATATCATGTTTCTTTCTACCTTTTTGCTCTGTATGAGGGTTCTTTTCAGTACATTCCCTAGACCACTCAGGTATAAAGACCTTTTGCTCGCAATATTTATTTCAAGTTACTTCAAGATGTTTCTTATTGCAATGATGGTCTGGGAATGTCCTTCTGTGATTTTCATCATTGATTTATTTGTTTTATCATCGAACACTGTGGCACTCAAAGTGATAACTCAGGCAGCTATGAGTAGATGTATAGCAGCCTGCTTCAGTGCTCATGTGGTAAAGTTTTTGGTCACACAAAGGTGCTGGAGTTGGGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arv1

Protein Analysis

230

Amino Acids

26.57

Weight (kDa)

8.79

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01020 AT1G01020 AT1G01020 AT1G01020 AT1G01020 AT1G01020 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510
fragaria_vesca	FvH4_7g17940 FvH4_7g17940 FvH4_7g17940 FvH4_7g17940
malus_domestica	MD01G1091900.v1.1 MD07G1162500.v1.1 MD07G1162600.v1.1
prunus_persica	Prupe.2G201100_v2.0.a1 Prupe.2G201100_v2.0.a1
pyrus_communis	pycom01g11580 pycom07g15760
rosa_chinensis	RchiOBHm_Chr1g0333691 RchiOBHm_Chr1g0361381 RchiOBHm_Chr1g0361671
rosa_multiflora	Rmu_sc0002621.1_g000016
rosa_roxburghii	Rroxscaffold_177G00434170 Rroxscaffold_4G00294960 Rroxscaffold_4G00295000
rosa_rugosa	Rorug01G0289100 Rorug01G0289200 Rorug01G0289300 Rorug07G0273800
rosa_samantha	Rh1AG112400 Rh1AG133400 Rh1AG134200 Rh1AG300000 Rh1CG065800 Rh1CG066000 Rh1CG127700 Rh1CG281300 Rh1CG282000 Rh2AG320800 Rh2AG329800 Rh4AG149900 Rh4CG344500 Rh6AG000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	242
AccII	CGCG	1 cut(s)	329
AciI	CCGC	2 cut(s)	24, 87
AcuI	CTGAAG	1 cut(s)	616
AfaI	GTAC	2 cut(s)	116, 430
AgsI	TTSAA	3 cut(s)	350, 483, 493
AjnI	CCWGG	1 cut(s)	61
AleI	CACNNNNGTG	1 cut(s)	667
AluBI	AGCT	4 cut(s)	173, 212, 324, 605
AluI	AGCT	4 cut(s)	173, 212, 324, 605
Alw21I	GWGCWC	1 cut(s)	640
Alw26I	GTCTC	1 cut(s)	284
ApeKI	GCWGC	2 cut(s)	602, 623
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
AsuHPI	GGTGA	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	640
BbvI	GCAGC	2 cut(s)	614, 635
BccI	CCATC	2 cut(s)	355, 508
BciT130I	CCWGG	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	438
BisI	GCNGC	2 cut(s)	603, 624
BlsI	GCNGC	2 cut(s)	604, 625
Bme1390I	CCNGG	1 cut(s)	63
BmrFI	CCNGG	1 cut(s)	63
BmsI	GCATC	2 cut(s)	256, 345
BsaBI	GATNNNNATC	1 cut(s)	542
Bse3DI	GCAATG	1 cut(s)	516
Bse8I	GATNNNNATC	1 cut(s)	542
BseBI	CCWGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	271
BseJI	GATNNNNATC	1 cut(s)	542
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	2 cut(s)	460, 611
BseXI	GCAGC	2 cut(s)	614, 635
Bsh1236I	CGCG	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	640
BsmAI	GTCTC	1 cut(s)	284
BsmI	GAATGC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	640
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	2 cut(s)	24, 87
BspCNI	CTCAG	2 cut(s)	459, 610
BspFNI	CGCG	1 cut(s)	329
BspHI	TCATGA	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	516
BssMI	GATC	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	577
Bst6I	CTCTTC	1 cut(s)	297
BstC8I	GCNNGC	2 cut(s)	468, 628
BstDEI	CTNAG	2 cut(s)	446, 597
BstF5I	GGATG	1 cut(s)	271
BstFNI	CGCG	1 cut(s)	329
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 93
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	2 cut(s)	614, 635
BtsCI	GGATG	1 cut(s)	271
BtsIMutI	CAGTG	2 cut(s)	573, 640
Cac8I	GCNNGC	2 cut(s)	468, 628
CciI	TCATGA	1 cut(s)	78
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	115, 429
CviAII	CATG	5 cut(s)	34, 79, 319, 385, 641
CviJI	RGCY	7 cut(s)	76, 173, 212, 312, 324, 605, 626
CviKI_1	RGCY	7 cut(s)	76, 173, 212, 312, 324, 605, 626
CviQI	GTAC	2 cut(s)	115, 429
DdeI	CTNAG	2 cut(s)	446, 597
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	616
EcoRII	CCWGG	1 cut(s)	61
FaeI	CATG	5 cut(s)	37, 82, 322, 388, 644
FatI	CATG	5 cut(s)	33, 78, 318, 384, 640
FauI	CCCGC	1 cut(s)	17
FblI	GTMKAC	1 cut(s)	242
Fnu4HI	GCNGC	2 cut(s)	603, 624
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	2 cut(s)	603, 624
FspBI	CTAG	1 cut(s)	438
GluI	GCNGC	2 cut(s)	603, 624
HgaI	GACGC	1 cut(s)	318
Hin1II	CATG	5 cut(s)	37, 82, 322, 388, 644
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	2 cut(s)	40, 277
HphI	GGTGA	1 cut(s)	51
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188III	TCNNGA	3 cut(s)	79, 287, 493
Hpy8I	GTNNAC	1 cut(s)	243
HpyAV	CCTTC	2 cut(s)	225, 540
HpyCH4III	ACNGT	1 cut(s)	577
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	4 cut(s)	96, 107, 160, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 93
HpyF3I	CTNAG	2 cut(s)	446, 597
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	5 cut(s)	37, 82, 322, 388, 644
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	9 cut(s)	48, 75, 209, 272, 433, 505, 584, 640, 658
Lsp1109I	GCAGC	2 cut(s)	614, 635
LweI	GCATC	2 cut(s)	256, 345
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	2 cut(s)	485, 658
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	2 cut(s)	248, 314
MhlI	GDGCHC	1 cut(s)	640
MluCI	AATT	3 cut(s)	135, 144, 153
MlyI	GAGTC	2 cut(s)	34, 286
MnlI	CCTC	1 cut(s)	408
MslI	CAYNNNNRTG	1 cut(s)	667
MspR9I	CCNGG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	128
MvaI	CCWGG	1 cut(s)	63
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	30, 93
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	5 cut(s)	37, 82, 322, 388, 644
NmuCI	GTSAC	1 cut(s)	658
OliI	CACNNNNGTG	1 cut(s)	667
PagI	TCATGA	1 cut(s)	78
PctI	GAATGC	1 cut(s)	128
PflFI	GACNNNGTC	1 cut(s)	368
PkrI	GCNGC	2 cut(s)	604, 625
PleI	GAGTC	2 cut(s)	34, 285
PpsI	GAGTC	2 cut(s)	34, 285
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PsyI	GACNNNGTC	1 cut(s)	368
RsaI	GTAC	2 cut(s)	116, 430
RsaNI	GTAC	2 cut(s)	115, 429
RseI	CAYNNNNRTG	1 cut(s)	667
SatI	GCNGC	2 cut(s)	603, 624
Sau3AI	GATC	1 cut(s)	148
SchI	GAGTC	2 cut(s)	34, 286
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	640
SfaNI	GCATC	2 cut(s)	256, 345
SmiMI	CAYNNNNRTG	1 cut(s)	667
Sse9I	AATT	3 cut(s)	135, 144, 153
SsiI	CCGC	2 cut(s)	24, 87
SspI	AATATT	1 cut(s)	474
SspMI	CTAG	1 cut(s)	438
StyD4I	CCNGG	1 cut(s)	61
TaaI	ACNGT	1 cut(s)	577
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	2 cut(s)	120, 569
TasI	AATT	3 cut(s)	135, 144, 153
TatI	WGTACW	2 cut(s)	114, 428
TscAI	CASTG	2 cut(s)	580, 640
TseFI	GTSAC	1 cut(s)	658
TseI	GCWGC	2 cut(s)	602, 623
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	2 cut(s)	95, 532
TspRI	CASTG	2 cut(s)	580, 640
Tth111I	GACNNNGTC	1 cut(s)	368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	59
XmiI	GTMKAC	1 cut(s)	242
XspI	CTAG	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.