MD07G1162500.v1.1

Protein arv1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0001502
Physical Location & Seq
Forward (+)
23757141 .. 23758535
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1162500.v1.1.491

Sequence Viewer

Length: 456 bp
ATGGAGTACAGATGTGTAGAGTGCGGCGGTCGCATGACGACTCTGTTCGTCCAATACTCTCCTGGCAACATTCGTCTCATGAAATGCGGTAATTGCAAGGCAGCTGCAGACGAATTATTCTGCACAAGACCAAAGCTTACACACATTTACTTTATTCTGCACAAGACCAAAGTTTACACACATTTACTCGATAATGTCATCGACCCACAAGCTCCTTCTTTCCAGGGTTTATTGTGGAAGTCGACTTTCGGATTTCTTCTGTTGGATGCTTATGTGTTTATATATGCATTGGGTGCCTTAGCAATGTGTAAAGATAGGAGCCTCTTCCTGGAAAGAAGCAAGGAAGAATGGGGCTTGTCCATGAGCTTCGCTTCGTTACTTTGGAGATTTCAAAAGATGCTGATGGATATTGTCTTGGAAATATCATGTTTCTTTCAACCTTTTCACTCGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arv1

Protein Analysis

152

Amino Acids

17.52

Weight (kDa)

8.47

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arv1 PF04161 4 - 144 2.9e-21 Arv1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 293
AccI GTMKAC 1 cut(s) 242
AciI CCGC 3 cut(s) 24, 27, 87
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 2 cut(s) 392, 437
AjnI CCWGG 3 cut(s) 61, 222, 327
AluBI AGCT 4 cut(s) 104, 136, 212, 366
AluI AGCT 4 cut(s) 104, 136, 212, 366
Alw26I GTCTC 1 cut(s) 80
ApeKI GCWGC 2 cut(s) 101, 104
BanI GGYRCC 1 cut(s) 293
BbvI GCAGC 2 cut(s) 91, 113
BccI CCATC 1 cut(s) 397
BciT130I CCWGG 3 cut(s) 63, 224, 329
BcoDI GTCTC 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 105
BisI GCNGC 3 cut(s) 25, 102, 105
BlsI GCNGC 3 cut(s) 26, 103, 106
Bme1390I CCNGG 3 cut(s) 63, 224, 329
BmiI GGNNCC 2 cut(s) 295, 320
BmrFI CCNGG 3 cut(s) 63, 224, 329
BmsI GCATC 2 cut(s) 256, 387
Bpu10I CCTNAGC 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 223
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse3DI GCAATG 1 cut(s) 309
BseBI CCWGG 3 cut(s) 63, 224, 329
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMI GCAATG 1 cut(s) 309
BseXI GCAGC 2 cut(s) 91, 113
BsgI GTGCAG 2 cut(s) 106, 143
Bsh1285I CGRYCG 1 cut(s) 31
BshNI GGYRCC 1 cut(s) 293
BsiEI CGRYCG 1 cut(s) 31
BslI CCNNNNNNNGG 1 cut(s) 328
BsmAI GTCTC 1 cut(s) 80
BsmBI CGTCTC 1 cut(s) 80
BspACI CCGC 3 cut(s) 24, 27, 87
BspHI TCATGA 1 cut(s) 78
BspLI GGNNCC 2 cut(s) 295, 320
BspMAI CTGCAG 1 cut(s) 109
BspT107I GGYRCC 1 cut(s) 293
BsrDI GCAATG 1 cut(s) 309
BssECI CCNNGG 1 cut(s) 223
Bst2UI CCWGG 3 cut(s) 63, 224, 329
Bst6I CTCTTC 1 cut(s) 329
BstAPI GCANNNNNTGC 1 cut(s) 293
BstDEI CTNAG 1 cut(s) 298
BstF5I GGATG 1 cut(s) 271
BstMAI GTCTC 1 cut(s) 80
BstMCI CGRYCG 1 cut(s) 31
BstMWI GCNNNNNNNGC 3 cut(s) 30, 93, 293
BstNI CCWGG 3 cut(s) 63, 224, 329
BstSCI CCNGG 3 cut(s) 61, 222, 327
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 2 cut(s) 91, 113
BtsCI GGATG 1 cut(s) 271
CciI TCATGA 1 cut(s) 78
Csp6I GTAC 1 cut(s) 7
CviAII CATG 4 cut(s) 34, 79, 361, 426
CviJI RGCY 6 cut(s) 104, 136, 212, 321, 354, 366
CviKI_1 RGCY 6 cut(s) 104, 136, 212, 321, 354, 366
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
EcoRII CCWGG 3 cut(s) 61, 222, 327
EcoT22I ATGCAT 1 cut(s) 289
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 4 cut(s) 37, 82, 364, 429
FaiI YATR 9 cut(s) 35, 80, 273, 281, 283, 285, 362, 427, 454
FatI CATG 4 cut(s) 33, 78, 360, 425
FblI GTMKAC 1 cut(s) 242
Fnu4HI GCNGC 3 cut(s) 25, 102, 105
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 3 cut(s) 25, 102, 105
GluI GCNGC 3 cut(s) 25, 102, 105
Hin1II CATG 4 cut(s) 37, 82, 364, 429
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 1 cut(s) 40
Hpy166II GTNNAC 2 cut(s) 175, 243
Hpy188I TCNGA 1 cut(s) 251
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 2 cut(s) 175, 243
HpyAV CCTTC 1 cut(s) 225
HpyCH4V TGCA 5 cut(s) 96, 107, 123, 160, 287
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 93, 293
HpyF3I CTNAG 1 cut(s) 298
Hsp92II CATG 4 cut(s) 37, 82, 364, 429
LmnI GCTCC 2 cut(s) 217, 318
LpnPI CCDG 6 cut(s) 48, 75, 209, 236, 314, 341
Lsp1109I GCAGC 2 cut(s) 91, 113
LweI GCATC 2 cut(s) 256, 387
MaeIII GTNAC 1 cut(s) 375
MboII GAAGA 3 cut(s) 248, 316, 356
MluCI AATT 2 cut(s) 91, 113
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 1 cut(s) 332
Mph1103I ATGCAT 1 cut(s) 289
MspA1I CMGCKG 1 cut(s) 104
MspR9I CCNGG 3 cut(s) 63, 224, 329
MvaI CCWGG 3 cut(s) 63, 224, 329
MwoI GCNNNNNNNGC 3 cut(s) 30, 93, 293
NlaIII CATG 4 cut(s) 37, 82, 364, 429
NlaIV GGNNCC 2 cut(s) 295, 320
NsiI ATGCAT 1 cut(s) 289
PagI TCATGA 1 cut(s) 78
PfoI TCCNGGA 1 cut(s) 327
PkrI GCNGC 3 cut(s) 26, 103, 106
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
Psp6I CCWGG 3 cut(s) 61, 222, 327
PspGI CCWGG 3 cut(s) 61, 222, 327
PspN4I GGNNCC 2 cut(s) 295, 320
PstI CTGCAG 1 cut(s) 109
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SalI GTCGAC 1 cut(s) 241
SatI GCNGC 3 cut(s) 25, 102, 105
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 3 cut(s) 63, 224, 329
SetI ASST 5 cut(s) 106, 138, 214, 368, 442
SfaNI GCATC 2 cut(s) 256, 387
SfcI CTRYAG 1 cut(s) 105
Sse9I AATT 2 cut(s) 91, 113
SsiI CCGC 3 cut(s) 24, 27, 87
StyD4I CCNGG 3 cut(s) 61, 222, 327
TaqI TCGA 3 cut(s) 189, 201, 242
TasI AATT 2 cut(s) 91, 113
TatI WGTACW 1 cut(s) 6
TauI GCSGC 1 cut(s) 27
TseI GCWGC 2 cut(s) 101, 104
TspDTI ATGAA 1 cut(s) 95
XcmI CCANNNNNNNNNTGG 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 242
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.