Rroxscaffold_4G00294960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001502
Physical Location & Seq
Reverse (-)
14873976 .. 14874574
599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294960.1

Sequence Viewer

Length: 504 bp
ATGCATGGCAAGAATGATGTGGAACATTTCCCAGCTGTGTGTATATTGGAGATTGCAACTTTGAGGGCTGGTAATCTTGTGGCTGAGGTAGATGTGGAACATCTCGCAACTTTGTTATGGAGGGGCGGTACTCTTGTGGCTGAAGCATCTTTGTGTATATTGGTGATTGCAGTATGGAGGGGCGGTACTCTTGTGGCTGAAGTGGATGCGGAACATCTCGCAGCTTGCGGTACTCTTGTGGCTGAAGTGGATGTGGAACATCTCACAGCTTTGTGTATATTGGTGACTGCAGTATGGAGGGGCGATACTCGTGTGGCTGAAGTGGATACAGAACATCTCGCAGCTTTGTGTATATTGGTGACTGCAGTATGGAGAGGCAGTTCTCTTATGGCTGATGCAAACCAAAGAGTGAATCCAGATTTTGTTCTGGCGGATCACGTAGCTAAATTAACAATCACAAAAAAGCAAGCATTAGTTCATACTTTTATGCGCATATTGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.02

Weight (kDa)

5.37

Isoelectric Point (pI)

16.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 491
AciI CCGC 5 cut(s) 126, 183, 209, 228, 431
AclWI GGATC 1 cut(s) 441
AcuI CTGAAG 4 cut(s) 162, 219, 264, 339
AfaI GTAC 3 cut(s) 130, 187, 232
AloI GAACNNNNNNTCC 2 cut(s) 364, 396
AluBI AGCT 5 cut(s) 35, 224, 269, 344, 443
AluI AGCT 5 cut(s) 35, 224, 269, 344, 443
AlwI GGATC 1 cut(s) 441
ApeKI GCWGC 2 cut(s) 221, 341
AspLEI GCGC 1 cut(s) 492
AsuHPI GGTGA 3 cut(s) 175, 295, 370
BaeI ACNNNNGTAYC 8 cut(s) 120, 153, 177, 210, 222, 255, 297, 330
BauI CACGAG 1 cut(s) 309
BbvCI CCTCAGC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 233, 353
BciVI GTATCC 1 cut(s) 319
BfmI CTRYAG 2 cut(s) 288, 363
BfuI GTATCC 1 cut(s) 319
BisI GCNGC 2 cut(s) 222, 342
BlsI GCNGC 2 cut(s) 223, 343
BmsI GCATC 3 cut(s) 155, 196, 385
Bpu10I CCTNAGC 1 cut(s) 84
BsaAI YACGTR 1 cut(s) 439
BsaXI ACNNNNNCTCC 6 cut(s) 112, 142, 169, 199, 364, 394
BseGI GGATG 2 cut(s) 211, 256
BseMII CTCAG 1 cut(s) 75
BseXI GCAGC 2 cut(s) 233, 353
BseYI CCCAGC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 433
BspACI CCGC 5 cut(s) 126, 183, 209, 228, 431
BspCNI CTCAG 1 cut(s) 76
BspMAI CTGCAG 2 cut(s) 292, 367
BspPI GGATC 1 cut(s) 441
BssMI GATC 1 cut(s) 433
BssSI CACGAG 1 cut(s) 309
Bst2BI CACGAG 1 cut(s) 309
BstBAI YACGTR 1 cut(s) 439
BstC8I GCNNGC 2 cut(s) 226, 468
BstDEI CTNAG 2 cut(s) 84, 501
BstF5I GGATG 2 cut(s) 211, 256
BstHHI GCGC 1 cut(s) 492
BstKTI GATC 1 cut(s) 436
BstMBI GATC 1 cut(s) 433
BstSFI CTRYAG 2 cut(s) 288, 363
BstV1I GCAGC 2 cut(s) 233, 353
BsuI GTATCC 1 cut(s) 319
BtsCI GGATG 2 cut(s) 211, 256
Cac8I GCNNGC 2 cut(s) 226, 468
CfoI GCGC 1 cut(s) 492
Csp6I GTAC 3 cut(s) 129, 186, 231
CviAII CATG 1 cut(s) 5
CviQI GTAC 3 cut(s) 129, 186, 231
DdeI CTNAG 2 cut(s) 84, 501
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
EciI GGCGGA 1 cut(s) 446
Eco57I CTGAAG 4 cut(s) 162, 219, 264, 339
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 8
FatI CATG 1 cut(s) 4
Fnu4HI GCNGC 2 cut(s) 222, 342
FokI GGATG 2 cut(s) 218, 263
Fsp4HI GCNGC 2 cut(s) 222, 342
FspAI RTGCGCAY 1 cut(s) 491
FspI TGCGCA 1 cut(s) 491
GlaI GCGC 1 cut(s) 491
GluI GCNGC 2 cut(s) 222, 342
GsaI CCCAGC 1 cut(s) 35
HhaI GCGC 1 cut(s) 492
Hin1II CATG 1 cut(s) 8
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HinfI GANTC 1 cut(s) 412
HphI GGTGA 3 cut(s) 175, 295, 370
Hpy188III TCNNGA 1 cut(s) 416
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 6 cut(s) 4, 56, 170, 290, 365, 398
HpyF3I CTNAG 2 cut(s) 84, 501
HpySE526I ACGT 1 cut(s) 438
Hsp92II CATG 1 cut(s) 8
HspAI GCGC 1 cut(s) 490
Kzo9I GATC 1 cut(s) 433
LpnPI CCDG 4 cut(s) 45, 54, 413, 429
Lsp1109I GCAGC 2 cut(s) 233, 353
LweI GCATC 3 cut(s) 155, 196, 385
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 2 cut(s) 283, 358
MalI GATC 1 cut(s) 435
MboI GATC 1 cut(s) 433
MluCI AATT 1 cut(s) 446
MnlI CCTC 6 cut(s) 57, 79, 114, 171, 291, 368
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 449
MslI CAYNNNNRTG 1 cut(s) 151
MspA1I CMGCKG 1 cut(s) 35
NdeII GATC 1 cut(s) 433
NlaIII CATG 1 cut(s) 8
NmuCI GTSAC 2 cut(s) 283, 358
NsbI TGCGCA 1 cut(s) 491
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 412
PkrI GCNGC 2 cut(s) 223, 343
Ppu21I YACGTR 1 cut(s) 439
PspFI CCCAGC 1 cut(s) 31
PstI CTGCAG 2 cut(s) 292, 367
PvuII CAGCTG 1 cut(s) 35
RsaI GTAC 3 cut(s) 130, 187, 232
RsaNI GTAC 3 cut(s) 129, 186, 231
RseI CAYNNNNRTG 1 cut(s) 151
SaqAI TTAA 1 cut(s) 449
SatI GCNGC 2 cut(s) 222, 342
Sau3AI GATC 1 cut(s) 433
SetI ASST 7 cut(s) 37, 90, 226, 271, 346, 441, 445
SfaNI GCATC 3 cut(s) 155, 196, 385
SfcI CTRYAG 2 cut(s) 288, 363
SmiMI CAYNNNNRTG 1 cut(s) 151
Sse9I AATT 1 cut(s) 446
SsiI CCGC 5 cut(s) 126, 183, 209, 228, 431
TaiI ACGT 1 cut(s) 441
TasI AATT 1 cut(s) 446
TfiI GAWTC 1 cut(s) 412
Tru1I TTAA 1 cut(s) 449
Tru9I TTAA 1 cut(s) 449
TseFI GTSAC 2 cut(s) 283, 358
TseI GCWGC 2 cut(s) 221, 341
Tsp45I GTSAC 2 cut(s) 283, 358
TspDTI ATGAA 1 cut(s) 467
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.