Rorug01G0289100

Protein arv1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001502
Physical Location & Seq
Forward (+)
40438365 .. 40440235
1871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0289100.1

Sequence Viewer

Length: 612 bp
ATGGGTGAAGATCATATATTTCAAGGTCATCAATGGCTTACTGATTGTTGTGACTCTTGCGCTGGGGAGCTCTTCCCAGTTACTGTGAATTTTCTGGGAATTATGGAGCTTTATGATATAATGGGCAGTCCAATATTGGGTTCTGCTCCTTTCTGTTTCTTAAAGATGGGTTTTTTAAGGCACTTCATACTGACTCGAATCTGCATAGGCTTCTTTTCGCTTTGCATTGATTGGGATGAATATGGATACAGGCTCTATGCTATTGAAGAACGATCGTTGGAGAGTATTCTTGGATTTTTATTCGGTAAATGTTGCCTTAATAGAGGAGTTTCAGGCATGACATATGTCCGGCAAGTGATATATGGTGATGATCGGTTGCTTGTTGTTTTGTCTGAAGATACTGATGAACTTAAGATGCTACATCTTAACCTTCCAGTTTCTTATATCTCACAAAATTGGTCAGTTCAACATGTAGCGGCTAGCAAGGATGGAATGTACTTGGCAATTGCTGATCTCCATGGGTTAATCATGTACAACACGATTCAAGAAGTGGTGTATTTGGAGACATTACTCAGGAACAGAAGATTCAGAGCAAAGTTTTGTTATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arv1

Protein Analysis

203

Amino Acids

23.32

Weight (kDa)

5.29

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_RIC1_2nd PF25440 121 - 181 8.3e-11 RIC1 second beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 476
AcsI RAATTY 1 cut(s) 88
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 2 cut(s) 497, 533
AfiI CCNNNNNNNGG 1 cut(s) 137
AflII CTTAAG 1 cut(s) 410
AflIII ACRYGT 1 cut(s) 469
AgsI TTSAA 4 cut(s) 23, 266, 467, 545
AjuI GAANNNNNNNTTGG 2 cut(s) 124, 156
AluBI AGCT 2 cut(s) 70, 109
AluI AGCT 2 cut(s) 70, 109
Alw21I GWGCWC 1 cut(s) 72
Alw26I GTCTC 1 cut(s) 557
AlwNI CAGNNNCTG 1 cut(s) 83
ApoI RAATTY 1 cut(s) 88
AspLEI GCGC 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 17, 377
AsuNHI GCTAGC 1 cut(s) 479
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 72
BccI CCATC 2 cut(s) 160, 482
BciVI GTATCC 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 557
BfaI CTAG 1 cut(s) 480
BfrI CTTAAG 1 cut(s) 410
BfuI GTATCC 1 cut(s) 239
BisI GCNGC 1 cut(s) 477
BlsI GCNGC 1 cut(s) 478
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 1 cut(s) 405
BmtI GCTAGC 1 cut(s) 483
BmuI ACTGGG 1 cut(s) 71
BoxI GACNNNNGTC 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 517
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 2 cut(s) 77, 434
BseDI CCNNGG 1 cut(s) 517
BseGI GGATG 2 cut(s) 241, 493
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 586
BseNI ACTGG 2 cut(s) 77, 434
BseRI GAGGAG 1 cut(s) 339
BseYI CCCAGC 1 cut(s) 62
Bsh1285I CGRYCG 1 cut(s) 275
BsiEI CGRYCG 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 72
BsiSI CCGG 1 cut(s) 349
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 557
Bsp1286I GDGCHC 1 cut(s) 72
Bsp1407I TGTACA 1 cut(s) 531
Bsp143I GATC 4 cut(s) 10, 272, 370, 511
Bsp19I CCATGG 1 cut(s) 517
BspACI CCGC 1 cut(s) 476
BspCNI CTCAG 1 cut(s) 585
BspOI GCTAGC 1 cut(s) 483
BspQI GCTCTTC 1 cut(s) 77
BspTI CTTAAG 1 cut(s) 410
BsrGI TGTACA 1 cut(s) 531
BsrI ACTGG 2 cut(s) 77, 434
BssECI CCNNGG 1 cut(s) 517
BssMI GATC 4 cut(s) 10, 272, 370, 511
BssT1I CCWWGG 1 cut(s) 517
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 77
BstAFI CTTAAG 1 cut(s) 410
BstAUI TGTACA 1 cut(s) 531
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 1 cut(s) 572
BstDSI CCRYGG 1 cut(s) 517
BstF5I GGATG 2 cut(s) 241, 493
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 4 cut(s) 13, 275, 373, 514
BstMAI GTCTC 1 cut(s) 557
BstMBI GATC 4 cut(s) 10, 272, 370, 511
BstMCI CGRYCG 1 cut(s) 275
BstNSI RCATGY 1 cut(s) 473
BstPAI GACNNNNGTC 1 cut(s) 344
BsuI GTATCC 1 cut(s) 239
BtgI CCRYGG 1 cut(s) 517
BtsCI GGATG 2 cut(s) 241, 493
Cac8I GCNNGC 1 cut(s) 481
CaiI CAGNNNCTG 1 cut(s) 83
CfoI GCGC 1 cut(s) 62
Csp6I GTAC 2 cut(s) 496, 532
CviAII CATG 4 cut(s) 337, 470, 518, 529
CviJI RGCY 6 cut(s) 37, 70, 109, 210, 253, 479
CviKI_1 RGCY 6 cut(s) 37, 70, 109, 210, 253, 479
CviQI GTAC 2 cut(s) 496, 532
DdeI CTNAG 1 cut(s) 572
DpnI GATC 4 cut(s) 12, 274, 372, 513
DpnII GATC 4 cut(s) 10, 272, 370, 511
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 517
Eco24I GRGCYC 1 cut(s) 72
Eco53kI GAGCTC 1 cut(s) 70
Eco57I CTGAAG 1 cut(s) 414
EcoICRI GAGCTC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 517
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 517
FaeI CATG 4 cut(s) 340, 473, 521, 532
FatI CATG 4 cut(s) 336, 469, 517, 528
FauNDI CATATG 1 cut(s) 343
Fnu4HI GCNGC 1 cut(s) 477
FokI GGATG 2 cut(s) 248, 500
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 477
FspBI CTAG 1 cut(s) 480
GlaI GCGC 1 cut(s) 61
GluI GCNGC 1 cut(s) 477
GsaI CCCAGC 1 cut(s) 66
HapII CCGG 1 cut(s) 349
HhaI GCGC 1 cut(s) 62
Hin1II CATG 4 cut(s) 340, 473, 521, 532
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HinfI GANTC 5 cut(s) 53, 193, 198, 541, 585
HpaII CCGG 1 cut(s) 349
HphI GGTGA 2 cut(s) 17, 377
Hpy188I TCNGA 2 cut(s) 394, 590
Hpy188III TCNNGA 2 cut(s) 545, 574
HpyAV CCTTC 1 cut(s) 440
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 204, 225
HpyF3I CTNAG 1 cut(s) 572
Hsp92II CATG 4 cut(s) 340, 473, 521, 532
HspAI GCGC 1 cut(s) 60
Kzo9I GATC 4 cut(s) 10, 272, 370, 511
LguI GCTCTTC 1 cut(s) 77
LmnI GCTCC 3 cut(s) 67, 106, 151
LpnPI CCDG 8 cut(s) 48, 80, 90, 235, 318, 362, 447, 559
LweI GCATC 1 cut(s) 405
MaeI CTAG 1 cut(s) 480
MaeIII GTNAC 2 cut(s) 50, 79
MalI GATC 4 cut(s) 12, 274, 372, 513
MboI GATC 4 cut(s) 10, 272, 370, 511
MboII GAAGA 5 cut(s) 20, 64, 278, 407, 594
MfeI CAATTG 1 cut(s) 504
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 4 cut(s) 88, 99, 454, 504
MlyI GAGTC 2 cut(s) 47, 187
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 1 cut(s) 317
MseI TTAA 6 cut(s) 161, 176, 318, 411, 426, 524
MspCI CTTAAG 1 cut(s) 410
MspI CCGG 1 cut(s) 349
MunI CAATTG 1 cut(s) 504
NcoI CCATGG 1 cut(s) 517
NdeI CATATG 1 cut(s) 343
NdeII GATC 4 cut(s) 10, 272, 370, 511
NheI GCTAGC 1 cut(s) 479
NlaIII CATG 4 cut(s) 340, 473, 521, 532
NmuCI GTSAC 1 cut(s) 50
NspI RCATGY 1 cut(s) 473
PciI ACATGT 1 cut(s) 469
PciSI GCTCTTC 1 cut(s) 77
PfeI GAWTC 3 cut(s) 198, 541, 585
PkrI GCNGC 1 cut(s) 478
Ple19I CGATCG 1 cut(s) 275
PleI GAGTC 2 cut(s) 47, 187
PpsI GAGTC 2 cut(s) 47, 187
PscI ACATGT 1 cut(s) 469
PshAI GACNNNNGTC 1 cut(s) 344
Psp124BI GAGCTC 1 cut(s) 72
PspFI CCCAGC 1 cut(s) 62
PstNI CAGNNNCTG 1 cut(s) 83
PvuI CGATCG 1 cut(s) 275
RsaI GTAC 2 cut(s) 497, 533
RsaNI GTAC 2 cut(s) 496, 532
SacI GAGCTC 1 cut(s) 72
SapI GCTCTTC 1 cut(s) 77
SaqAI TTAA 6 cut(s) 161, 176, 318, 411, 426, 524
SatI GCNGC 1 cut(s) 477
Sau3AI GATC 4 cut(s) 10, 272, 370, 511
SchI GAGTC 2 cut(s) 47, 187
SduI GDGCHC 1 cut(s) 72
SetI ASST 4 cut(s) 28, 72, 111, 432
SfaNI GCATC 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
Sse9I AATT 4 cut(s) 88, 99, 454, 504
SsiI CCGC 1 cut(s) 476
SspI AATATT 1 cut(s) 135
SspMI CTAG 1 cut(s) 480
SstI GAGCTC 1 cut(s) 72
StyI CCWWGG 1 cut(s) 517
TaaI ACNGT 1 cut(s) 85
TaqI TCGA 1 cut(s) 196
TasI AATT 4 cut(s) 88, 99, 454, 504
TatI WGTACW 2 cut(s) 495, 531
TauI GCSGC 1 cut(s) 479
TfiI GAWTC 3 cut(s) 198, 541, 585
Tru1I TTAA 6 cut(s) 161, 176, 318, 411, 426, 524
Tru9I TTAA 6 cut(s) 161, 176, 318, 411, 426, 524
TseFI GTSAC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 3 cut(s) 175, 252, 420
Vha464I CTTAAG 1 cut(s) 410
XapI RAATTY 1 cut(s) 88
XceI RCATGY 1 cut(s) 473
XspI CTAG 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.