Rh4AG149900

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001502
Physical Location & Seq
Reverse (-)
37759275 .. 37765963
6689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG149900.1

Sequence Viewer

Length: 588 bp
ATGTTGTTACATCATTCTTACAAACAAATTTCCATTACAGAAAAGTTAAGCAATATCAGTATACCAAAGATACAAAACGAATTGCTTCTAAAAAGTCATGGTTCTCTTACGAATCTGGTCTGGGAATGGCTTCCTGTGATTTTAATCATTGATTTATTTGTATTATCCTCCAACACTGTGGCACTCAAAGTGATAACTCGATCAGCTATGAGTAGATGTATAGCAGCCTCCTTCAGTACTCATGTTGTAAAGTTTTTAGTCACACAAAGTTTGCTTCCGTCACAGTATGGCGCTGAAGTATATAACATAACTCCTTCACACCCATTAGCAGAGGGTCAAACTCTAGTCTCTCCTGGCCTAATATTCGAACTGGGCTTCTTCAGTCCTAATAGTTCTGCTAACAAATATCTGGGGTTGTGGCACAAAAGCGTATTTCCCCGCAAGTATGTATGGGTAGCTAACAGAGATAATCCTCTTGCAGATACAGACACCATGGCTACTTTGAGAATTGGTGGCAATGGGAACCTGGAGCTTGTAGATGGGAAACAGACTTCTTATTGTTCCTGTGAAATTGACATGGGTGAGTAA

Protein Analysis

195

Amino Acids

21.62

Weight (kDa)

7.01

Isoelectric Point (pI)

36.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 149 - 188 2.1e-06 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 61
AciI CCGC 1 cut(s) 439
AcsI RAATTY 1 cut(s) 27
AcuI CTGAAG 3 cut(s) 217, 315, 364
AfaI GTAC 1 cut(s) 238
AjnI CCWGG 2 cut(s) 352, 525
AluBI AGCT 3 cut(s) 206, 458, 532
AluI AGCT 3 cut(s) 206, 458, 532
Alw26I GTCTC 1 cut(s) 352
AoxI GGCC 1 cut(s) 355
ApeKI GCWGC 1 cut(s) 224
ApoI RAATTY 1 cut(s) 27
Asp700I GAANNNNTTC 2 cut(s) 84, 129
AspLEI GCGC 1 cut(s) 293
AsuII TTCGAA 1 cut(s) 366
BbvI GCAGC 1 cut(s) 236
BccI CCATC 1 cut(s) 533
BciT130I CCWGG 2 cut(s) 354, 527
BcoDI GTCTC 1 cut(s) 352
BfaI CTAG 1 cut(s) 344
BfoI RGCGCY 1 cut(s) 294
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
BmcAI AGTACT 1 cut(s) 238
Bme1390I CCNGG 2 cut(s) 354, 527
BmiI GGNNCC 1 cut(s) 524
BmrFI CCNGG 2 cut(s) 354, 527
BmrI ACTGGG 1 cut(s) 380
BmuI ACTGGG 1 cut(s) 380
BpmI CTGGAG 1 cut(s) 548
Bpu14I TTCGAA 1 cut(s) 366
BsaBI GATNNNNATC 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 492
Bse1I ACTGG 1 cut(s) 375
Bse3DI GCAATG 1 cut(s) 523
Bse8I GATNNNNATC 1 cut(s) 143
BseBI CCWGG 2 cut(s) 354, 527
BseDI CCNNGG 1 cut(s) 492
BseJI GATNNNNATC 1 cut(s) 143
BseMI GCAATG 1 cut(s) 523
BseNI ACTGG 1 cut(s) 375
BseXI GCAGC 1 cut(s) 236
BshFI GGCC 1 cut(s) 357
BsmAI GTCTC 1 cut(s) 352
BsnI GGCC 1 cut(s) 357
Bsp119I TTCGAA 1 cut(s) 366
Bsp143I GATC 1 cut(s) 200
Bsp19I CCATGG 1 cut(s) 492
BspACI CCGC 1 cut(s) 439
BspANI GGCC 1 cut(s) 357
BspLI GGNNCC 1 cut(s) 524
BspT104I TTCGAA 1 cut(s) 366
BsrDI GCAATG 1 cut(s) 523
BsrI ACTGG 1 cut(s) 375
BssECI CCNNGG 1 cut(s) 492
BssMI GATC 1 cut(s) 200
BssNAI GTATAC 1 cut(s) 62
BssT1I CCWWGG 1 cut(s) 492
Bst1107I GTATAC 1 cut(s) 62
Bst2UI CCWGG 2 cut(s) 354, 527
Bst4CI ACNGT 2 cut(s) 178, 285
BstBI TTCGAA 1 cut(s) 366
BstDSI CCRYGG 1 cut(s) 492
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 1 cut(s) 293
BstKTI GATC 1 cut(s) 203
BstMAI GTCTC 1 cut(s) 352
BstMBI GATC 1 cut(s) 200
BstNI CCWGG 2 cut(s) 354, 527
BstSCI CCNGG 2 cut(s) 352, 525
BstV1I GCAGC 1 cut(s) 236
BstXI CCANNNNNNTGG 1 cut(s) 178
BstZ17I GTATAC 1 cut(s) 62
BsuRI GGCC 1 cut(s) 357
BtgI CCRYGG 1 cut(s) 492
BtsIMutI CAGTG 1 cut(s) 174
CfoI GCGC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 237
CviAII CATG 4 cut(s) 98, 242, 493, 577
CviJI RGCY 8 cut(s) 130, 206, 227, 357, 375, 458, 497, 532
CviKI_1 RGCY 8 cut(s) 130, 206, 227, 357, 375, 458, 497, 532
CviQI GTAC 1 cut(s) 237
DpnI GATC 1 cut(s) 202
DpnII GATC 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 492
Eco57I CTGAAG 3 cut(s) 217, 315, 364
EcoRII CCWGG 2 cut(s) 352, 525
EcoT14I CCWWGG 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 492
FaeI CATG 4 cut(s) 101, 245, 496, 580
FatI CATG 4 cut(s) 97, 241, 492, 576
FauI CCCGC 1 cut(s) 446
FblI GTMKAC 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 1 cut(s) 344
GlaI GCGC 1 cut(s) 292
GluI GCNGC 1 cut(s) 225
GsuI CTGGAG 1 cut(s) 548
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 1 cut(s) 357
HhaI GCGC 1 cut(s) 293
Hin1II CATG 4 cut(s) 101, 245, 496, 580
Hin6I GCGC 1 cut(s) 291
HinP1I GCGC 1 cut(s) 291
HinfI GANTC 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 62
Hpy8I GTNNAC 1 cut(s) 62
HpyAV CCTTC 2 cut(s) 241, 324
HpyCH4III ACNGT 2 cut(s) 178, 285
HpyCH4V TGCA 1 cut(s) 479
Hsp92II CATG 4 cut(s) 101, 245, 496, 580
HspAI GCGC 1 cut(s) 291
Kzo9I GATC 1 cut(s) 200
LmnI GCTCC 1 cut(s) 529
Lsp1109I GCAGC 1 cut(s) 236
MaeI CTAG 1 cut(s) 344
MaeIII GTNAC 3 cut(s) 6, 259, 279
MalI GATC 1 cut(s) 202
MboI GATC 1 cut(s) 200
MboII GAAGA 1 cut(s) 370
MluCI AATT 4 cut(s) 27, 80, 507, 570
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 4 cut(s) 178, 238, 325, 483
MroXI GAANNNNTTC 2 cut(s) 84, 129
MseI TTAA 2 cut(s) 47, 143
MspR9I CCNGG 2 cut(s) 354, 527
MvaI CCWGG 2 cut(s) 354, 527
NcoI CCATGG 1 cut(s) 492
NdeII GATC 1 cut(s) 200
NlaIII CATG 4 cut(s) 101, 245, 496, 580
NlaIV GGNNCC 1 cut(s) 524
NmuCI GTSAC 2 cut(s) 259, 279
NspV TTCGAA 1 cut(s) 366
PdmI GAANNNNTTC 2 cut(s) 84, 129
PfeI GAWTC 1 cut(s) 112
PkrI GCNGC 1 cut(s) 226
Psp6I CCWGG 2 cut(s) 352, 525
PspGI CCWGG 2 cut(s) 352, 525
PspN4I GGNNCC 1 cut(s) 524
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
SaqAI TTAA 2 cut(s) 47, 143
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 1 cut(s) 200
ScaI AGTACT 1 cut(s) 238
ScrFI CCNGG 2 cut(s) 354, 527
SetI ASST 4 cut(s) 208, 460, 528, 534
SfuI TTCGAA 1 cut(s) 366
Sse9I AATT 4 cut(s) 27, 80, 507, 570
SsiI CCGC 1 cut(s) 439
SspI AATATT 1 cut(s) 363
SspMI CTAG 1 cut(s) 344
StyD4I CCNGG 2 cut(s) 352, 525
StyI CCWWGG 1 cut(s) 492
TaaI ACNGT 2 cut(s) 178, 285
TaqI TCGA 2 cut(s) 199, 366
TasI AATT 4 cut(s) 27, 80, 507, 570
TatI WGTACW 1 cut(s) 236
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 2 cut(s) 47, 143
Tru9I TTAA 2 cut(s) 47, 143
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 2 cut(s) 259, 279
TseI GCWGC 1 cut(s) 224
Tsp45I GTSAC 2 cut(s) 259, 279
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 1 cut(s) 181
XapI RAATTY 1 cut(s) 27
XmiI GTMKAC 1 cut(s) 61
XmnI GAANNNNTTC 2 cut(s) 84, 129
XspI CTAG 1 cut(s) 344
ZrmI AGTACT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.