AT4G01510

Protein arv1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001502
Physical Location & Seq
Forward (+)
642714 .. 644400
1687 bp
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UTR
Exon/CDS
Intron
AT4G01510.6

Sequence Viewer

Length: 687 bp
ATGGCGAGAGAGAAGAAGACGTGTGTAGAGTGTGGGCACAAGGTTAAATCTTTGTTCATACAATACTCTCCTGGAAATTTTCGTCTCATGAAATGCGAGAATTGCGAAGAAGTAGCAGACGAATATGTCGAGTGTGAGCTATTGATTATTTTCATCGACTTGATTCTTCACAAAACAAAGGCTTATAGACACTTACTCTACAATGTTGTTAATCAAGAATCTGCAAATGTTCAGCATCTATTATGGAAATTGGTCTTGGCTTATCTTCTTCTAGATACTTATAGAAGCTTGCTACTGAGAAGAACCAATGACGGATCAAATGTGTCTATGAGCTTTCTTTTTGAATCTCTAGAGGTTCTGGTCAATGTACTATCTGCGAATTTCGCATTTGTTTTCTCATTTGCATTTGCTGCTAAGTTGATGCTGGTTATGCCAAGAGGGAAAGAGATTCTTTTAACGATCTTAATCTCGAGTTACGTCAAGATCTTTCTATTTGCTATGCCGGTCTGGGAATTCCCAGTTTCTGTGATCTTCATCGTAGATATGCTCGTTTTAACCTCAAACGCAGTTGCTCTTAAAGTGATGACTGAATCAGCAACGAGCAGATGCTTAGCAGTGTGTTTCATTGCACACTCAATTAGATTCTTGGTGGATCAGATCTCTGGACACTTAGGATCTGTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arv1

Protein Analysis

228

Amino Acids

25.95

Weight (kDa)

7.61

Isoelectric Point (pI)

33.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arv1 PF04161 8 - 169 1.5e-43 Arv1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 125
AclWI GGATC 3 cut(s) 322, 660, 682
AcsI RAATTY 3 cut(s) 76, 379, 512
AfaI GTAC 1 cut(s) 369
AflIII ACRYGT 1 cut(s) 20
AgsI TTSAA 1 cut(s) 344
AjiI CACGTC 1 cut(s) 21
AjnI CCWGG 1 cut(s) 70
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 3 cut(s) 139, 288, 333
AluI AGCT 3 cut(s) 139, 288, 333
Alw26I GTCTC 1 cut(s) 89
AlwI GGATC 3 cut(s) 322, 660, 682
AlwNI CAGNNNCTG 1 cut(s) 524
Ama87I CYCGRG 1 cut(s) 469
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 3 cut(s) 76, 379, 512
AvaI CYCGRG 1 cut(s) 469
BaeGI GKGCMC 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 397
BciT130I CCWGG 1 cut(s) 72
BcoDI GTCTC 1 cut(s) 89
BfaI CTAG 2 cut(s) 272, 350
BglII AGATCT 2 cut(s) 483, 657
BisI GCNGC 1 cut(s) 411
BlpI GCTNAGC 1 cut(s) 610
BlsI GCNGC 1 cut(s) 412
Bme1390I CCNGG 1 cut(s) 72
BmeT110I CYCGRG 1 cut(s) 469
BmgBI CACGTC 1 cut(s) 21
BmrFI CCNGG 1 cut(s) 72
BmrI ACTGGG 1 cut(s) 512
BmsI GCATC 3 cut(s) 244, 411, 596
BmuI ACTGGG 1 cut(s) 512
BpiI GAAGAC 1 cut(s) 23
Bpu1102I GCTNAGC 1 cut(s) 610
BsaBI GATNNNNATC 2 cut(s) 464, 533
Bse118I RCCGGY 1 cut(s) 502
Bse1I ACTGG 1 cut(s) 518
Bse3DI GCAATG 1 cut(s) 624
Bse8I GATNNNNATC 2 cut(s) 464, 533
BseBI CCWGG 1 cut(s) 72
BseJI GATNNNNATC 2 cut(s) 464, 533
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 1 cut(s) 518
BseSI GKGCMC 1 cut(s) 39
BseXI GCAGC 1 cut(s) 397
BsiHKCI CYCGRG 1 cut(s) 469
BsiSI CCGG 1 cut(s) 503
BsmAI GTCTC 1 cut(s) 89
BsmBI CGTCTC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 469
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 7 cut(s) 314, 459, 483, 528, 652, 657, 674
Bsp1720I GCTNAGC 1 cut(s) 610
BspCNI CTCAG 1 cut(s) 288
BspHI TCATGA 1 cut(s) 87
BspPI GGATC 3 cut(s) 322, 660, 682
BsrDI GCAATG 1 cut(s) 624
BsrFI RCCGGY 1 cut(s) 502
BsrI ACTGG 1 cut(s) 518
BssAI RCCGGY 1 cut(s) 502
BssMI GATC 7 cut(s) 314, 459, 483, 528, 652, 657, 674
Bst2UI CCWGG 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 290
BstDEI CTNAG 4 cut(s) 296, 414, 610, 670
BstKTI GATC 7 cut(s) 317, 462, 486, 531, 655, 660, 677
BstMAI GTCTC 1 cut(s) 89
BstMBI GATC 7 cut(s) 314, 459, 483, 528, 652, 657, 674
BstMWI GCNNNNNNNGC 4 cut(s) 102, 383, 410, 430
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 70
BstSLI GKGCMC 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 397
BstV2I GAAGAC 1 cut(s) 23
BstX2I RGATCY 3 cut(s) 483, 657, 674
BstYI RGATCY 3 cut(s) 483, 657, 674
BtrI CACGTC 1 cut(s) 21
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 1 cut(s) 621
Cac8I GCNNGC 1 cut(s) 290
CaiI CAGNNNCTG 1 cut(s) 524
CciI TCATGA 1 cut(s) 87
Cfr10I RCCGGY 1 cut(s) 502
Csp6I GTAC 1 cut(s) 368
CviAII CATG 2 cut(s) 88, 682
CviJI RGCY 5 cut(s) 139, 182, 260, 288, 333
CviKI_1 RGCY 5 cut(s) 139, 182, 260, 288, 333
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 4 cut(s) 296, 414, 610, 670
DpnI GATC 7 cut(s) 316, 461, 485, 530, 654, 659, 676
DpnII GATC 7 cut(s) 314, 459, 483, 528, 652, 657, 674
DrdI GACNNNNNNGTC 1 cut(s) 125
DseDI GACNNNNNNGTC 1 cut(s) 125
Eco88I CYCGRG 1 cut(s) 469
EcoRI GAATTC 1 cut(s) 512
EcoRII CCWGG 1 cut(s) 70
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 2 cut(s) 91, 685
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FatI CATG 2 cut(s) 87, 681
Fnu4HI GCNGC 1 cut(s) 411
Fsp4HI GCNGC 1 cut(s) 411
FspBI CTAG 2 cut(s) 272, 350
GluI GCNGC 1 cut(s) 411
HapII CCGG 1 cut(s) 503
Hin1II CATG 2 cut(s) 91, 685
HindIII AAGCTT 1 cut(s) 286
HinfI GANTC 6 cut(s) 163, 218, 344, 448, 590, 642
HpaII CCGG 1 cut(s) 503
Hpy188I TCNGA 1 cut(s) 657
Hpy188III TCNNGA 7 cut(s) 88, 215, 272, 350, 469, 481, 663
HpyCH4IV ACGT 2 cut(s) 20, 477
HpyCH4V TGCA 3 cut(s) 224, 404, 629
HpyF10VI GCNNNNNNNGC 4 cut(s) 102, 383, 410, 430
HpyF3I CTNAG 4 cut(s) 296, 414, 610, 670
HpySE526I ACGT 2 cut(s) 20, 477
Hsp92II CATG 2 cut(s) 91, 685
Kzo9I GATC 7 cut(s) 314, 459, 483, 528, 652, 657, 674
LpnPI CCDG 8 cut(s) 57, 84, 344, 410, 493, 516, 531, 648
Lsp1109I GCAGC 1 cut(s) 397
LweI GCATC 3 cut(s) 244, 411, 596
MaeI CTAG 2 cut(s) 272, 350
MaeII ACGT 2 cut(s) 20, 477
MaeIII GTNAC 1 cut(s) 473
MalI GATC 7 cut(s) 316, 461, 485, 530, 654, 659, 676
MboI GATC 7 cut(s) 314, 459, 483, 528, 652, 657, 674
MboII GAAGA 8 cut(s) 25, 28, 119, 158, 257, 260, 312, 523
MflI RGATCY 3 cut(s) 483, 657, 674
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 6 cut(s) 76, 100, 248, 379, 512, 636
MnlI CCTC 3 cut(s) 346, 431, 568
MseI TTAA 6 cut(s) 45, 210, 455, 464, 554, 576
MspI CCGG 1 cut(s) 503
MspR9I CCNGG 1 cut(s) 72
MvaI CCWGG 1 cut(s) 72
MwoI GCNNNNNNNGC 4 cut(s) 102, 383, 410, 430
NdeII GATC 7 cut(s) 314, 459, 483, 528, 652, 657, 674
NlaIII CATG 2 cut(s) 91, 685
PaeR7I CTCGAG 1 cut(s) 469
PagI TCATGA 1 cut(s) 87
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 6 cut(s) 163, 218, 344, 448, 590, 642
PfoI TCCNGGA 1 cut(s) 70
PkrI GCNGC 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PstNI CAGNNNCTG 1 cut(s) 524
PsuI RGATCY 3 cut(s) 483, 657, 674
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
SaqAI TTAA 6 cut(s) 45, 210, 455, 464, 554, 576
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 7 cut(s) 314, 459, 483, 528, 652, 657, 674
ScrFI CCNGG 1 cut(s) 72
SduI GDGCHC 1 cut(s) 39
SetI ASST 8 cut(s) 23, 45, 141, 290, 335, 357, 480, 560
SfaNI GCATC 3 cut(s) 244, 411, 596
Sfr274I CTCGAG 1 cut(s) 469
SlaI CTCGAG 1 cut(s) 469
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
Sse9I AATT 6 cut(s) 76, 100, 248, 379, 512, 636
SspMI CTAG 2 cut(s) 272, 350
StyD4I CCNGG 1 cut(s) 70
TaiI ACGT 2 cut(s) 23, 480
TaqI TCGA 3 cut(s) 129, 156, 470
TasI AATT 6 cut(s) 76, 100, 248, 379, 512, 636
TatI WGTACW 1 cut(s) 367
TfiI GAWTC 6 cut(s) 163, 218, 344, 448, 590, 642
Tru1I TTAA 6 cut(s) 45, 210, 455, 464, 554, 576
Tru9I TTAA 6 cut(s) 45, 210, 455, 464, 554, 576
TscAI CASTG 1 cut(s) 621
TseI GCWGC 1 cut(s) 410
TspDTI ATGAA 5 cut(s) 46, 104, 142, 523, 613
TspGWI ACGGA 1 cut(s) 327
TspRI CASTG 1 cut(s) 621
XapI RAATTY 3 cut(s) 76, 379, 512
XbaI TCTAGA 2 cut(s) 271, 349
XhoI CTCGAG 1 cut(s) 469
XspI CTAG 2 cut(s) 272, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.