Rroxscaffold_4G00295000

Protein arv1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001502
Physical Location & Seq
Reverse (-)
14892441 .. 14894784
2344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00295000.1

Sequence Viewer

Length: 690 bp
ATGGAGTATCGATGTGTGGAATGTGGGGCTCGAATGATGAGGCTTTTCGTTCAATACTCACCTGGAAATATTCGACTCATGAAATGCGGTAATTGCAAGGCAGTTGCGGACGAGTACATCGAGTGCGAGCCCATAATTATTCTGATTGATTTGATTCTGCACAAGAAGAAAGCTTATACCCATTTGCTATATAATGTGATCGACTCGCAAGCTCCCGCCTTTCAGGGTTTGTTGTGGAAGTCAGCTTTCGGGTTTCTTCTTTTGGATGCTTATAGGAGTTTATTTCTGGAAAGGACCAGGGAAGAGTGGGGTTTGTCCATGAGCTTTGCTTCTTTGCTTTGGAGGTTTCAAAATATGCTGATGGATGTTGTCTTTGGGAATTTCATGTTTTTTTCTACCTTTGTGCTTGCTACGAGGGCTCTTTTCAGCAAATTCCCTAGATTACTCGGGTACAAAGACCTTCTGCTGGCAATACTTATTTCAAGTTACTTCAAGATGTTTCTAATTGCAATGATGGTCTGGGAATGTCCTTCTGTGATTTTGATCATTGATTTATTTGTATTATCCTCCAACACTGTGGCACTCAAAGTGATAACTCAGTCAGCTATGAGTAGATGTATAGCAGCCTGCTTCAGTGCTCATGCTGTAAAGTTTTTAGTGACACAAAGGTGCTGGACTTGGGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arv1

Protein Analysis

229

Amino Acids

26.5

Weight (kDa)

8.85

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arv1 PF04161 4 - 195 2.7e-49 Arv1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 87, 107, 216
AcsI RAATTY 2 cut(s) 379, 431
AcuI CTGAAG 1 cut(s) 616
AfaI GTAC 2 cut(s) 116, 452
AfiI CCNNNNNNNGG 1 cut(s) 466
AgsI TTSAA 4 cut(s) 53, 350, 483, 493
AjnI CCWGG 2 cut(s) 61, 296
AleI CACNNNNGTG 1 cut(s) 667
AluBI AGCT 5 cut(s) 173, 212, 245, 324, 605
AluI AGCT 5 cut(s) 173, 212, 245, 324, 605
Alw21I GWGCWC 1 cut(s) 640
Ama87I CYCGRG 1 cut(s) 446
ApeKI GCWGC 1 cut(s) 623
ApoI RAATTY 2 cut(s) 379, 431
AspS9I GGNCC 1 cut(s) 294
AsuHPI GGTGA 1 cut(s) 51
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 1 cut(s) 294
BanII GRGCYC 3 cut(s) 31, 132, 421
Bbv12I GWGCWC 1 cut(s) 640
BbvI GCAGC 1 cut(s) 635
BccI CCATC 2 cut(s) 355, 508
BciT130I CCWGG 2 cut(s) 63, 298
BclI TGATCA 1 cut(s) 543
BfaI CTAG 1 cut(s) 438
BisI GCNGC 1 cut(s) 624
BlsI GCNGC 1 cut(s) 625
Bme1390I CCNGG 2 cut(s) 63, 298
Bme18I GGWCC 1 cut(s) 294
BmeT110I CYCGRG 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 294
BmrFI CCNGG 2 cut(s) 63, 298
BmsI GCATC 1 cut(s) 256
Bsa29I ATCGAT 1 cut(s) 10
BsaBI GATNNNNATC 1 cut(s) 542
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 466
Bse3DI GCAATG 1 cut(s) 516
Bse8I GATNNNNATC 1 cut(s) 542
BseBI CCWGG 2 cut(s) 63, 298
BseCI ATCGAT 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 2 cut(s) 271, 370
BseJI GATNNNNATC 1 cut(s) 542
BseLI CCNNNNNNNGG 1 cut(s) 466
BseMI GCAATG 1 cut(s) 516
BseMII CTCAG 1 cut(s) 611
BseXI GCAGC 1 cut(s) 635
BsgI GTGCAG 1 cut(s) 143
BshVI ATCGAT 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 640
BsiHKCI CYCGRG 1 cut(s) 446
BslI CCNNNNNNNGG 1 cut(s) 466
BsoBI CYCGRG 1 cut(s) 446
Bsp1286I GDGCHC 4 cut(s) 31, 132, 421, 640
Bsp143I GATC 2 cut(s) 198, 543
BspACI CCGC 3 cut(s) 87, 107, 216
BspCNI CTCAG 1 cut(s) 610
BspDI ATCGAT 1 cut(s) 10
BspHI TCATGA 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 516
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 2 cut(s) 198, 543
Bst2UI CCWGG 2 cut(s) 63, 298
Bst4CI ACNGT 1 cut(s) 577
Bst6I CTCTTC 1 cut(s) 297
BstC8I GCNNGC 5 cut(s) 128, 210, 408, 468, 628
BstDEI CTNAG 1 cut(s) 597
BstF5I GGATG 2 cut(s) 271, 370
BstKTI GATC 2 cut(s) 201, 546
BstMBI GATC 2 cut(s) 198, 543
BstMWI GCNNNNNNNGC 2 cut(s) 93, 416
BstNI CCWGG 2 cut(s) 63, 298
BstSCI CCNGG 2 cut(s) 61, 296
BstV1I GCAGC 1 cut(s) 635
BstXI CCANNNNNNTGG 1 cut(s) 577
Bsu15I ATCGAT 1 cut(s) 10
BsuTUI ATCGAT 1 cut(s) 10
BtsCI GGATG 2 cut(s) 271, 370
BtsIMutI CAGTG 2 cut(s) 573, 640
Cac8I GCNNGC 5 cut(s) 128, 210, 408, 468, 628
CciI TCATGA 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 294
ClaI ATCGAT 1 cut(s) 10
Csp6I GTAC 2 cut(s) 115, 451
CviAII CATG 4 cut(s) 79, 319, 385, 641
CviQI GTAC 2 cut(s) 115, 451
DdeI CTNAG 1 cut(s) 597
DpnI GATC 2 cut(s) 200, 545
DpnII GATC 2 cut(s) 198, 543
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco24I GRGCYC 3 cut(s) 31, 132, 421
Eco47I GGWCC 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 616
Eco88I CYCGRG 1 cut(s) 446
EcoRII CCWGG 2 cut(s) 61, 296
EcoT38I GRGCYC 3 cut(s) 31, 132, 421
FaeI CATG 4 cut(s) 82, 322, 388, 644
FatI CATG 4 cut(s) 78, 318, 384, 640
FauI CCCGC 1 cut(s) 223
FbaI TGATCA 1 cut(s) 543
Fnu4HI GCNGC 1 cut(s) 624
FokI GGATG 2 cut(s) 278, 377
FriOI GRGCYC 3 cut(s) 31, 132, 421
Fsp4HI GCNGC 1 cut(s) 624
FspBI CTAG 1 cut(s) 438
GluI GCNGC 1 cut(s) 624
Hin1II CATG 4 cut(s) 82, 322, 388, 644
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 3 cut(s) 75, 154, 203
HphI GGTGA 1 cut(s) 51
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 3 cut(s) 79, 287, 493
HpyAV CCTTC 2 cut(s) 470, 540
HpyCH4III ACNGT 1 cut(s) 577
HpyCH4V TGCA 3 cut(s) 96, 160, 509
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 416
HpyF3I CTNAG 1 cut(s) 597
Hsp92II CATG 4 cut(s) 82, 322, 388, 644
Ksp22I TGATCA 1 cut(s) 543
Kzo9I GATC 2 cut(s) 198, 543
LmnI GCTCC 1 cut(s) 217
Lsp1109I GCAGC 1 cut(s) 635
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 438
MaeIII GTNAC 2 cut(s) 485, 658
MalI GATC 2 cut(s) 200, 545
MboI GATC 2 cut(s) 198, 543
MboII GAAGA 3 cut(s) 178, 248, 314
MhlI GDGCHC 4 cut(s) 31, 132, 421, 640
MluCI AATT 5 cut(s) 91, 135, 379, 431, 504
MlyI GAGTC 2 cut(s) 69, 197
MmeI TCCRAC 1 cut(s) 594
MnlI CCTC 4 cut(s) 33, 336, 408, 577
MslI CAYNNNNRTG 1 cut(s) 667
MspR9I CCNGG 2 cut(s) 63, 298
MvaI CCWGG 2 cut(s) 63, 298
MwoI GCNNNNNNNGC 2 cut(s) 93, 416
NdeII GATC 2 cut(s) 198, 543
NlaIII CATG 4 cut(s) 82, 322, 388, 644
NmuCI GTSAC 1 cut(s) 658
OliI CACNNNNGTG 1 cut(s) 667
PagI TCATGA 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 1 cut(s) 625
PleI GAGTC 2 cut(s) 69, 197
PpsI GAGTC 2 cut(s) 69, 197
Psp6I CCWGG 2 cut(s) 61, 296
PspGI CCWGG 2 cut(s) 61, 296
PspPI GGNCC 1 cut(s) 294
RsaI GTAC 2 cut(s) 116, 452
RsaNI GTAC 2 cut(s) 115, 451
RseI CAYNNNNRTG 1 cut(s) 667
SatI GCNGC 1 cut(s) 624
Sau3AI GATC 2 cut(s) 198, 543
Sau96I GGNCC 1 cut(s) 294
SchI GAGTC 2 cut(s) 69, 197
ScrFI CCNGG 2 cut(s) 63, 298
SduI GDGCHC 4 cut(s) 31, 132, 421, 640
SfaNI GCATC 1 cut(s) 256
SinI GGWCC 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 667
Sse9I AATT 5 cut(s) 91, 135, 379, 431, 504
SsiI CCGC 3 cut(s) 87, 107, 216
SspI AATATT 1 cut(s) 70
SspMI CTAG 1 cut(s) 438
StyD4I CCNGG 2 cut(s) 61, 296
TaaI ACNGT 1 cut(s) 577
TaqI TCGA 5 cut(s) 10, 31, 73, 120, 201
TasI AATT 5 cut(s) 91, 135, 379, 431, 504
TatI WGTACW 1 cut(s) 114
TfiI GAWTC 1 cut(s) 154
TscAI CASTG 2 cut(s) 580, 640
TseFI GTSAC 1 cut(s) 658
TseI GCWGC 1 cut(s) 623
Tsp45I GTSAC 1 cut(s) 658
TspDTI ATGAA 2 cut(s) 95, 373
TspRI CASTG 2 cut(s) 580, 640
VpaK11BI GGWCC 1 cut(s) 294
XapI RAATTY 2 cut(s) 379, 431
XspI CTAG 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.