Rh1AG133400

Protein arv1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001502
Physical Location & Seq
Forward (+)
25624900 .. 25627437
2538 bp
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UTR
Exon/CDS
Intron
Rh1AG133400.1

Sequence Viewer

Length: 270 bp
ATGCAGCGTGCATTGGGTGAGGTTTTTGGAGTAGACCAATCTGTTGCATTGAAACTACTGGGATCTGAAAGATCATTCGAACCTCTTGAAGTGATGCAGCCAACAACCAAAAAGAAACGAATGATTATTCTGATTGATTTGATTCTGCACAAGAAGAAAGCTTATACCCATTTGCTATATAATGTGATTGACTCGCAAGCTCCCGCCTTTCAGGGTTTAGTGGAATTCAGCTTTCGGGTTTCTTCTTTTGGATGCTTGTTTCCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arv1

Protein Analysis

89

Amino Acids

10.12

Weight (kDa)

9.25

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arv1 PF04161 40 - 71 5e-08 Arv1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 33
AciI CCGC 1 cut(s) 204
AclWI GGATC 1 cut(s) 70
AcsI RAATTY 1 cut(s) 224
AgsI TTSAA 2 cut(s) 52, 89
AluBI AGCT 3 cut(s) 161, 200, 231
AluI AGCT 3 cut(s) 161, 200, 231
AlwI GGATC 1 cut(s) 70
ApeKI GCWGC 2 cut(s) 4, 97
ApoI RAATTY 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 29
AsuII TTCGAA 1 cut(s) 78
BbvI GCAGC 2 cut(s) 16, 109
BisI GCNGC 2 cut(s) 5, 98
BlsI GCNGC 2 cut(s) 6, 99
BmrI ACTGGG 1 cut(s) 68
BmsI GCATC 2 cut(s) 84, 242
BmuI ACTGGG 1 cut(s) 68
Bpu14I TTCGAA 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 63
BseGI GGATG 1 cut(s) 257
BseNI ACTGG 1 cut(s) 63
BseXI GCAGC 2 cut(s) 16, 109
BsgI GTGCAG 1 cut(s) 131
Bsp119I TTCGAA 1 cut(s) 78
Bsp143I GATC 2 cut(s) 62, 71
BspACI CCGC 1 cut(s) 204
BspPI GGATC 1 cut(s) 70
BspT104I TTCGAA 1 cut(s) 78
BsrI ACTGG 1 cut(s) 63
BssMI GATC 2 cut(s) 62, 71
BstBI TTCGAA 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 9, 198
BstF5I GGATG 1 cut(s) 257
BstKTI GATC 2 cut(s) 65, 74
BstMBI GATC 2 cut(s) 62, 71
BstV1I GCAGC 2 cut(s) 16, 109
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BtsCI GGATG 1 cut(s) 257
Cac8I GCNNGC 2 cut(s) 9, 198
CviJI RGCY 4 cut(s) 100, 161, 200, 231
CviKI_1 RGCY 4 cut(s) 100, 161, 200, 231
DpnI GATC 2 cut(s) 64, 73
DpnII GATC 2 cut(s) 62, 71
EcoRI GAATTC 1 cut(s) 224
FaiI YATR 3 cut(s) 165, 178, 180
FauI CCCGC 1 cut(s) 211
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 2 cut(s) 5, 98
FokI GGATG 1 cut(s) 264
Fsp4HI GCNGC 2 cut(s) 5, 98
GluI GCNGC 2 cut(s) 5, 98
HindIII AAGCTT 1 cut(s) 159
HinfI GANTC 2 cut(s) 142, 191
HphI GGTGA 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 2 cut(s) 67, 132
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 34
HpyCH4V TGCA 5 cut(s) 4, 11, 47, 97, 148
Kzo9I GATC 2 cut(s) 62, 71
LmnI GCTCC 1 cut(s) 205
LpnPI CCDG 2 cut(s) 44, 197
Lsp1109I GCAGC 2 cut(s) 16, 109
LweI GCATC 2 cut(s) 84, 242
MalI GATC 2 cut(s) 64, 73
MboI GATC 2 cut(s) 62, 71
MboII GAAGA 2 cut(s) 166, 234
MflI RGATCY 1 cut(s) 62
MluCI AATT 1 cut(s) 224
MlyI GAGTC 1 cut(s) 185
MnlI CCTC 2 cut(s) 13, 93
NdeII GATC 2 cut(s) 62, 71
NspV TTCGAA 1 cut(s) 78
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 2 cut(s) 6, 99
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PsuI RGATCY 1 cut(s) 62
SatI GCNGC 2 cut(s) 5, 98
Sau3AI GATC 2 cut(s) 62, 71
SchI GAGTC 1 cut(s) 185
SetI ASST 5 cut(s) 24, 85, 163, 202, 233
SfaNI GCATC 2 cut(s) 84, 242
SfuI TTCGAA 1 cut(s) 78
SgeI CNNG 9 cut(s) 20, 71, 98, 163, 205, 209, 215, 224, 248
Sse9I AATT 1 cut(s) 224
SsiI CCGC 1 cut(s) 204
TaqI TCGA 1 cut(s) 78
TasI AATT 1 cut(s) 224
TfiI GAWTC 1 cut(s) 142
TseI GCWGC 2 cut(s) 4, 97
XapI RAATTY 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.