Rorug01G0289200

Protein arv1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001502
Physical Location & Seq
Forward (+)
40440972 .. 40444005
3034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0289200.1

Sequence Viewer

Length: 603 bp
ATGACTGCAAAGAGCCATCCTGCAGCCATACGTTTTGTTCCAGATCAGCTTCCGAGAGATCACATTTCAGATAATCATATGTCTAACTCAGATCCTTTACTAAAAGAGCCTGCAAGCTATGTGCTCTTCCAAAATGATTATGGCCACCGCGGAATGCAGGTTTGGTATCCATCTCTGGGTGTTGACCCTTTTATGCAGGAGGATTTCTTGCAGAGAATGTCATTTTCAGCCTGCAGAGAGTTTCCATTTTTTGAGCCAACACCTCAAGCTCAAACTATATTACATTGTCTTCTAAGGCACCTTATTCAGGCAAAGTGCTCTGTGCTTAACTATGCAAAGAATTCCTCTCTTTCAGAGAAGACTACGATATTCTTAGAAATTTTCTGGAGTATTTTGATGTGGTTGTCAGTGTTGCAAGAAAAACTGATGGTCGACATTGGGCGGATTTGTGCACTGCTGCTGGGTGATCAACAGAGTTCTTTGAGGAATGCTTCCAATGTAGATGGCCCCGCACTGCTGTGTGCTATACACTTGCAATACTGGACAAATGTTTATATCAACTTGCTGGGAAGCTGGTATGTCATTGGAAATTTCATGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arv1

Protein Analysis

200

Amino Acids

22.92

Weight (kDa)

6.13

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 148
AccB1I GGYRCC 1 cut(s) 297
AccI GTMKAC 1 cut(s) 432
AccII CGCG 1 cut(s) 150
AciI CCGC 4 cut(s) 148, 150, 442, 510
AclWI GGATC 1 cut(s) 86
AcoI YGGCCR 1 cut(s) 142
AcsI RAATTY 3 cut(s) 340, 378, 589
AfiI CCNNNNNNNGG 2 cut(s) 176, 307
AjuI GAANNNNNNNTTGG 2 cut(s) 145, 177
AleI CACNNNNGTG 1 cut(s) 517
AluBI AGCT 4 cut(s) 49, 117, 269, 573
AluI AGCT 4 cut(s) 49, 117, 269, 573
Alw21I GWGCWC 3 cut(s) 126, 320, 454
Alw44I GTGCAC 1 cut(s) 450
AlwI GGATC 1 cut(s) 86
AoxI GGCC 2 cut(s) 142, 505
ApaLI GTGCAC 1 cut(s) 450
ApeKI GCWGC 2 cut(s) 23, 457
ApoI RAATTY 3 cut(s) 340, 378, 589
AspS9I GGNCC 1 cut(s) 506
AsuHPI GGTGA 1 cut(s) 476
BaeGI GKGCMC 1 cut(s) 454
BalI TGGCCA 1 cut(s) 144
BanI GGYRCC 1 cut(s) 297
BbsI GAAGAC 2 cut(s) 281, 365
Bbv12I GWGCWC 3 cut(s) 126, 320, 454
BbvI GCAGC 2 cut(s) 35, 444
BccI CCATC 4 cut(s) 24, 178, 421, 497
BciVI GTATCC 1 cut(s) 177
BclI TGATCA 1 cut(s) 466
BfmI CTRYAG 2 cut(s) 21, 232
BfuAI ACCTGC 1 cut(s) 148
BfuI GTATCC 1 cut(s) 177
BisI GCNGC 2 cut(s) 24, 458
BlsI GCNGC 2 cut(s) 25, 459
BmgT120I GGNCC 1 cut(s) 506
BmiI GGNNCC 2 cut(s) 299, 508
BpiI GAAGAC 2 cut(s) 281, 365
BpmI CTGGAG 1 cut(s) 406
BpuEI CTTGAG 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 307
Bse1I ACTGG 1 cut(s) 545
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 1 cut(s) 16
BseLI CCNNNNNNNGG 2 cut(s) 176, 307
BseMII CTCAG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 545
BseSI GKGCMC 1 cut(s) 454
BseXI GCAGC 2 cut(s) 35, 444
BseYI CCCAGC 2 cut(s) 460, 565
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 2 cut(s) 144, 507
BshNI GGYRCC 1 cut(s) 297
BsiHKAI GWGCWC 3 cut(s) 126, 320, 454
BslI CCNNNNNNNGG 2 cut(s) 176, 307
BsmI GAATGC 2 cut(s) 159, 493
BsnI GGCC 2 cut(s) 144, 507
Bsp1286I GDGCHC 3 cut(s) 126, 320, 454
Bsp143I GATC 4 cut(s) 43, 58, 91, 466
BspACI CCGC 4 cut(s) 148, 150, 442, 510
BspANI GGCC 2 cut(s) 144, 507
BspCNI CTCAG 1 cut(s) 101
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 2 cut(s) 299, 508
BspMAI CTGCAG 2 cut(s) 25, 236
BspMI ACCTGC 1 cut(s) 148
BspPI GGATC 1 cut(s) 86
BspQI GCTCTTC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 297
BsrI ACTGG 1 cut(s) 545
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 4 cut(s) 43, 58, 91, 466
Bst6I CTCTTC 1 cut(s) 131
BstC8I GCNNGC 3 cut(s) 111, 115, 232
BstDEI CTNAG 3 cut(s) 88, 293, 373
BstDSI CCRYGG 1 cut(s) 148
BstENI CCTNNNNNAGG 1 cut(s) 305
BstF5I GGATG 1 cut(s) 16
BstFNI CGCG 1 cut(s) 150
BstKTI GATC 4 cut(s) 46, 61, 94, 469
BstMBI GATC 4 cut(s) 43, 58, 91, 466
BstSFI CTRYAG 2 cut(s) 21, 232
BstSLI GKGCMC 1 cut(s) 454
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 35, 444
BstV2I GAAGAC 2 cut(s) 281, 365
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BsuI GTATCC 1 cut(s) 177
BsuRI GGCC 2 cut(s) 144, 507
BtgI CCRYGG 1 cut(s) 148
BtsCI GGATG 1 cut(s) 16
BtsI GCAGTG 2 cut(s) 452, 512
BtsIMutI CAGTG 3 cut(s) 414, 452, 512
BveI ACCTGC 1 cut(s) 148
Cac8I GCNNGC 3 cut(s) 111, 115, 232
Cfr13I GGNCC 1 cut(s) 506
Cfr42I CCGCGG 1 cut(s) 151
CviAII CATG 1 cut(s) 595
DdeI CTNAG 3 cut(s) 88, 293, 373
DpnI GATC 4 cut(s) 45, 60, 93, 468
DpnII GATC 4 cut(s) 43, 58, 91, 466
EaeI YGGCCR 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
EciI GGCGGA 1 cut(s) 457
EcoNI CCTNNNNNAGG 1 cut(s) 305
EcoRI GAATTC 1 cut(s) 340
FaeI CATG 1 cut(s) 598
FatI CATG 1 cut(s) 594
FauI CCCGC 1 cut(s) 517
FauNDI CATATG 1 cut(s) 78
FbaI TGATCA 1 cut(s) 466
FblI GTMKAC 1 cut(s) 432
Fnu4HI GCNGC 2 cut(s) 24, 458
FokI GGATG 1 cut(s) 3
Fsp4HI GCNGC 2 cut(s) 24, 458
GluI GCNGC 2 cut(s) 24, 458
GsaI CCCAGC 2 cut(s) 464, 569
GsuI CTGGAG 1 cut(s) 406
HaeIII GGCC 2 cut(s) 144, 507
Hin1II CATG 1 cut(s) 598
HincII GTYRAC 2 cut(s) 184, 433
HindII GTYRAC 2 cut(s) 184, 433
HphI GGTGA 1 cut(s) 476
Hpy166II GTNNAC 3 cut(s) 184, 433, 452
Hpy188I TCNGA 4 cut(s) 54, 70, 91, 355
Hpy188III TCNNGA 2 cut(s) 41, 385
Hpy8I GTNNAC 3 cut(s) 184, 433, 452
HpyCH4IV ACGT 1 cut(s) 31
HpyF3I CTNAG 3 cut(s) 88, 293, 373
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 1 cut(s) 598
Ksp22I TGATCA 1 cut(s) 466
KspI CCGCGG 1 cut(s) 151
Kzo9I GATC 4 cut(s) 43, 58, 91, 466
LguI GCTCTTC 1 cut(s) 131
Lsp1109I GCAGC 2 cut(s) 35, 444
MaeII ACGT 1 cut(s) 31
MalI GATC 4 cut(s) 45, 60, 93, 468
MboI GATC 4 cut(s) 43, 58, 91, 466
MboII GAAGA 3 cut(s) 118, 281, 370
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 3 cut(s) 126, 320, 454
MlsI TGGCCA 1 cut(s) 144
MluCI AATT 3 cut(s) 340, 378, 589
MluNI TGGCCA 1 cut(s) 144
MnlI CCTC 4 cut(s) 193, 273, 355, 477
Mox20I TGGCCA 1 cut(s) 144
MscI TGGCCA 1 cut(s) 144
MseI TTAA 2 cut(s) 327, 601
MslI CAYNNNNRTG 1 cut(s) 517
Msp20I TGGCCA 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 150
Mva1269I GAATGC 2 cut(s) 159, 493
MvnI CGCG 1 cut(s) 150
NdeI CATATG 1 cut(s) 78
NdeII GATC 4 cut(s) 43, 58, 91, 466
NlaIII CATG 1 cut(s) 598
NlaIV GGNNCC 2 cut(s) 299, 508
OliI CACNNNNGTG 1 cut(s) 517
PciSI GCTCTTC 1 cut(s) 131
PctI GAATGC 2 cut(s) 159, 493
PkrI GCNGC 2 cut(s) 25, 459
PspFI CCCAGC 2 cut(s) 460, 565
PspN4I GGNNCC 2 cut(s) 299, 508
PspPI GGNCC 1 cut(s) 506
PstI CTGCAG 2 cut(s) 25, 236
PsuI RGATCY 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 517
SacII CCGCGG 1 cut(s) 151
SalI GTCGAC 1 cut(s) 431
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 2 cut(s) 327, 601
SatI GCNGC 2 cut(s) 24, 458
Sau3AI GATC 4 cut(s) 43, 58, 91, 466
Sau96I GGNCC 1 cut(s) 506
SduI GDGCHC 3 cut(s) 126, 320, 454
SetI ASST 8 cut(s) 34, 51, 119, 162, 265, 271, 303, 575
SfcI CTRYAG 2 cut(s) 21, 232
Sfr303I CCGCGG 1 cut(s) 151
SgrBI CCGCGG 1 cut(s) 151
SmiMI CAYNNNNRTG 1 cut(s) 517
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
Sse9I AATT 3 cut(s) 340, 378, 589
SsiI CCGC 4 cut(s) 148, 150, 442, 510
TaiI ACGT 1 cut(s) 34
TaqI TCGA 1 cut(s) 432
TasI AATT 3 cut(s) 340, 378, 589
Tru1I TTAA 2 cut(s) 327, 601
Tru9I TTAA 2 cut(s) 327, 601
TscAI CASTG 3 cut(s) 414, 459, 519
TseI GCWGC 2 cut(s) 23, 457
TspDTI ATGAA 1 cut(s) 583
TspRI CASTG 3 cut(s) 414, 459, 519
VneI GTGCAC 1 cut(s) 450
XagI CCTNNNNNAGG 1 cut(s) 305
XapI RAATTY 3 cut(s) 340, 378, 589
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.