Rh1CG282000

Protein arv1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001502
Physical Location & Seq
Forward (+)
55384683 .. 55386780
2098 bp
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UTR
Exon/CDS
Intron
Rh1CG282000.1

Sequence Viewer

Length: 297 bp
ATGCTGATGGATGTTGTATTCGGATGTTTCATGTGTCTATCTACCTTTCTGTTTGCTCCGAGGGCTCTTTTCAGCACATTCCCTATATCACTTGGATACAAAGACGACCTGCTGGCACTACTTATTTCAAGTTACTTCAAGATGTTTCTATTTGCAATACTGATGTGGGAATATCCTTCTATGACTTTGAACATTGATTTATTTGTGTTATCCTCCAACACAGTGGCACTCAAAGCTCAGATGATAAGGTATTTACAGTCTTGGTCATCATTTTACATTTTTCAATTCAATATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arv1

Protein Analysis

98

Amino Acids

11.45

Weight (kDa)

5.95

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arv1 PF04161 17 - 77 2.8e-06 Arv1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 117
AgsI TTSAA 5 cut(s) 129, 139, 190, 284, 289
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
BanII GRGCYC 1 cut(s) 67
BciVI GTATCC 1 cut(s) 89
BfaI CTAG 1 cut(s) 295
BfuAI ACCTGC 1 cut(s) 117
BfuI GTATCC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 2 cut(s) 16, 29
BseMII CTCAG 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 250
BspMI ACCTGC 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 59
Bst4CI ACNGT 2 cut(s) 223, 258
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 237
BstF5I GGATG 2 cut(s) 16, 29
BstMWI GCNNNNNNNGC 2 cut(s) 62, 233
BstXI CCANNNNNNTGG 1 cut(s) 223
BsuI GTATCC 1 cut(s) 89
BtsCI GGATG 2 cut(s) 16, 29
BtsIMutI CAGTG 1 cut(s) 228
BveI ACCTGC 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 114
CviAII CATG 1 cut(s) 31
CviJI RGCY 2 cut(s) 65, 236
CviKI_1 RGCY 2 cut(s) 65, 236
DdeI CTNAG 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 67
FaeI CATG 1 cut(s) 34
FaiI YATR 3 cut(s) 32, 86, 182
FatI CATG 1 cut(s) 30
FokI GGATG 2 cut(s) 23, 36
FriOI GRGCYC 1 cut(s) 67
FspBI CTAG 1 cut(s) 295
Hin1II CATG 1 cut(s) 34
Hpy188I TCNGA 3 cut(s) 23, 60, 240
Hpy188III TCNNGA 1 cut(s) 139
HpyAV CCTTC 1 cut(s) 186
HpyCH4III ACNGT 2 cut(s) 223, 258
HpyCH4V TGCA 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 233
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 1 cut(s) 34
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 2 cut(s) 98, 122
MaeI CTAG 1 cut(s) 295
MaeIII GTNAC 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 2 cut(s) 54, 223
MwoI GCNNNNNNNGC 2 cut(s) 62, 233
NlaIII CATG 1 cut(s) 34
SduI GDGCHC 1 cut(s) 67
SetI ASST 4 cut(s) 47, 111, 238, 251
SgeI CNNG 8 cut(s) 43, 72, 104, 121, 125, 141, 151, 273
Sse9I AATT 1 cut(s) 284
SspMI CTAG 1 cut(s) 295
TaaI ACNGT 2 cut(s) 223, 258
TasI AATT 1 cut(s) 284
TscAI CASTG 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 19
TspRI CASTG 1 cut(s) 228
XspI CTAG 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.