Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001502

Physical Location & Seq

Genomic Coordinates Forward (+)

12600350 .. 12602710

Gene Structure 2361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g11580.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGATTAAGAAGAACCAGTGTTTCCAGAGTGCCCACAGAGAGAGAGGGGCTCAGAGCGCCATGGAGTACAGATGTGTAGAGTGCGGCGGTCGCATGACGACTCTGTTCGTCCAATACTCTCCCGGAAACATTCGTCTCATGAAATGCGGTAATTGCAAGGCAGTTGCAGACGAGTACATTGAATGCGAACCCATAATTATTCTAATTGATTTGATTCTGCACAAGACCAAAGCTTATACACATTTACTCTATAATGTCATCGACCCACAAGCTCCTTCTTTCCAGGGTTTATTGTGGAAGTCGACTTTCGGGTTTCTTCTGCTGGATGCTTATAGGAGTCTCTTTTTGGAAAGAAGCAAGGAAGAATGGGGCTTGTCCATGAGCTTTGCCTCGTTACTTTGGAGATTTCAAAAGATGCTGATGGATATCGTCTTTGGAAATATCATGTTTCTTTCTACATTTTTACTTGCTATGAGGATTCTTTTCAGCACATTCCCTAGACCACTCAGGTATAAAGAGCTTCTGCTTGCAATATTTATTTCAAGTTACTTCAAGATGTTTCTTATTGCAATGATGGTCTGGGAATGTCCTTCTGTGATTTTGATCGTTGATTTATTTGTTTTATCATCCAACACTGTGGCACTCAAAGTAATAACTCAGTCAGCTATGAGTAGATGTATAGCGGCCTGCTTCAGTGCTCATGTGGTAAAGTTTTTGGTCACACAAAGGTGCTGGAGTTGGGAACTTTTTAGATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arv1

Protein Analysis

253

Amino Acids

29.2

Weight (kDa)

9.11

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01020 AT1G01020 AT1G01020 AT1G01020 AT1G01020 AT1G01020 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510
fragaria_vesca	FvH4_7g17940 FvH4_7g17940 FvH4_7g17940 FvH4_7g17940
malus_domestica	MD01G1091900.v1.1 MD07G1162500.v1.1 MD07G1162600.v1.1
prunus_persica	Prupe.2G201100_v2.0.a1 Prupe.2G201100_v2.0.a1
pyrus_communis	pycom01g11580 pycom07g15760
rosa_chinensis	RchiOBHm_Chr1g0333691 RchiOBHm_Chr1g0361381 RchiOBHm_Chr1g0361671
rosa_multiflora	Rmu_sc0002621.1_g000016
rosa_roxburghii	Rroxscaffold_177G00434170 Rroxscaffold_4G00294960 Rroxscaffold_4G00295000
rosa_rugosa	Rorug01G0289100 Rorug01G0289200 Rorug01G0289300 Rorug07G0273800
rosa_samantha	Rh1AG112400 Rh1AG133400 Rh1AG134200 Rh1AG300000 Rh1CG065800 Rh1CG066000 Rh1CG127700 Rh1CG281300 Rh1CG282000 Rh2AG320800 Rh2AG329800 Rh4AG149900 Rh4CG344500 Rh6AG000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	302
AciI	CCGC	4 cut(s)	84, 87, 147, 683
AcuI	CTGAAG	1 cut(s)	676
AfaI	GTAC	2 cut(s)	68, 176
AgsI	TTSAA	4 cut(s)	182, 410, 543, 553
AjnI	CCWGG	1 cut(s)	282
AleI	CACNNNNGTG	1 cut(s)	727
AluBI	AGCT	5 cut(s)	233, 272, 384, 520, 665
AluI	AGCT	5 cut(s)	233, 272, 384, 520, 665
Alw21I	GWGCWC	1 cut(s)	700
Alw26I	GTCTC	2 cut(s)	140, 344
AoxI	GGCC	1 cut(s)	684
AspLEI	GCGC	1 cut(s)	59
AsuC2I	CCSGG	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	52
Bbv12I	GWGCWC	1 cut(s)	700
BccI	CCATC	2 cut(s)	415, 568
BciT130I	CCWGG	1 cut(s)	284
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	140, 344
BfaI	CTAG	1 cut(s)	498
BfoI	RGCGCY	1 cut(s)	60
BglII	AGATCT	1 cut(s)	752
BisI	GCNGC	2 cut(s)	85, 684
BlsI	GCNGC	2 cut(s)	86, 685
Bme1390I	CCNGG	2 cut(s)	123, 284
BmrFI	CCNGG	2 cut(s)	123, 284
BmsI	GCATC	2 cut(s)	316, 405
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
BpmI	CTGGAG	1 cut(s)	754
BpuMI	CCSGG	1 cut(s)	123
BsaBI	GATNNNNATC	2 cut(s)	425, 602
BsaJI	CCNNGG	2 cut(s)	60, 283
Bse1I	ACTGG	1 cut(s)	16
Bse3DI	GCAATG	1 cut(s)	576
Bse8I	GATNNNNATC	2 cut(s)	425, 602
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	2 cut(s)	60, 283
BseGI	GGATG	2 cut(s)	331, 626
BseJI	GATNNNNATC	2 cut(s)	425, 602
BseMI	GCAATG	1 cut(s)	576
BseMII	CTCAG	3 cut(s)	65, 520, 671
BseNI	ACTGG	1 cut(s)	16
BseSI	GKGCMC	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	203
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	686
BsiEI	CGRYCG	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	700
BsiSI	CCGG	1 cut(s)	123
BsmAI	GTCTC	2 cut(s)	140, 344
BsmBI	CGTCTC	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	686
Bsp1286I	GDGCHC	3 cut(s)	34, 52, 700
Bsp143I	GATC	2 cut(s)	603, 752
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	4 cut(s)	84, 87, 147, 683
BspANI	GGCC	1 cut(s)	686
BspCNI	CTCAG	3 cut(s)	64, 519, 670
BspHI	TCATGA	1 cut(s)	138
BsrDI	GCAATG	1 cut(s)	576
BsrI	ACTGG	1 cut(s)	16
BssECI	CCNNGG	2 cut(s)	60, 283
BssMI	GATC	2 cut(s)	603, 752
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	1 cut(s)	637
BstC8I	GCNNGC	2 cut(s)	528, 688
BstDEI	CTNAG	3 cut(s)	51, 506, 657
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	2 cut(s)	331, 626
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	2 cut(s)	606, 755
BstMAI	GTCTC	2 cut(s)	140, 344
BstMBI	GATC	2 cut(s)	603, 752
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 90, 153
BstNI	CCWGG	1 cut(s)	284
BstSCI	CCNGG	2 cut(s)	121, 282
BstSLI	GKGCMC	1 cut(s)	34
BstX2I	RGATCY	1 cut(s)	752
BstXI	CCANNNNNNTGG	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	752
BsuRI	GGCC	1 cut(s)	686
BtgI	CCRYGG	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	331, 626
BtsIMutI	CAGTG	3 cut(s)	23, 633, 700
Cac8I	GCNNGC	2 cut(s)	528, 688
CciI	TCATGA	1 cut(s)	138
CfoI	GCGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	67, 175
CviAII	CATG	6 cut(s)	61, 94, 139, 379, 445, 701
CviJI	RGCY	8 cut(s)	50, 233, 272, 372, 384, 520, 665, 686
CviKI_1	RGCY	8 cut(s)	50, 233, 272, 372, 384, 520, 665, 686
CviQI	GTAC	2 cut(s)	67, 175
DdeI	CTNAG	3 cut(s)	51, 506, 657
DpnI	GATC	2 cut(s)	605, 754
DpnII	GATC	2 cut(s)	603, 752
Eco130I	CCWWGG	1 cut(s)	60
Eco24I	GRGCYC	1 cut(s)	52
Eco32I	GATATC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	676
EcoRII	CCWGG	1 cut(s)	282
EcoRV	GATATC	1 cut(s)	427
EcoT14I	CCWWGG	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	52
ErhI	CCWWGG	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	140
FaeI	CATG	6 cut(s)	64, 97, 142, 382, 448, 704
FatI	CATG	6 cut(s)	60, 93, 138, 378, 444, 700
FblI	GTMKAC	1 cut(s)	302
Fnu4HI	GCNGC	2 cut(s)	85, 684
FokI	GGATG	2 cut(s)	338, 613
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	2 cut(s)	85, 684
FspBI	CTAG	1 cut(s)	498
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	2 cut(s)	85, 684
GsuI	CTGGAG	1 cut(s)	754
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	686
HapII	CCGG	1 cut(s)	123
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	6 cut(s)	64, 97, 142, 382, 448, 704
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	4 cut(s)	100, 214, 337, 478
HpaII	CCGG	1 cut(s)	123
Hpy166II	GTNNAC	1 cut(s)	303
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	3 cut(s)	25, 139, 553
Hpy8I	GTNNAC	1 cut(s)	303
HpyAV	CCTTC	2 cut(s)	285, 600
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4V	TGCA	5 cut(s)	156, 167, 220, 530, 569
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 90, 153
HpyF3I	CTNAG	3 cut(s)	51, 506, 657
Hsp92II	CATG	6 cut(s)	64, 97, 142, 382, 448, 704
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	603, 752
LmnI	GCTCC	1 cut(s)	277
LweI	GCATC	2 cut(s)	316, 405
MaeI	CTAG	1 cut(s)	498
MaeIII	GTNAC	3 cut(s)	393, 545, 718
MalI	GATC	2 cut(s)	605, 754
MboI	GATC	2 cut(s)	603, 752
MboII	GAAGA	3 cut(s)	22, 308, 374
MflI	RGATCY	1 cut(s)	752
MhlI	GDGCHC	3 cut(s)	34, 52, 700
MluCI	AATT	3 cut(s)	151, 195, 204
MlyI	GAGTC	2 cut(s)	94, 346
MmeI	TCCRAC	1 cut(s)	654
MnlI	CCTC	3 cut(s)	38, 400, 468
MseI	TTAA	2 cut(s)	6, 757
MslI	CAYNNNNRTG	1 cut(s)	727
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	123, 284
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	3 cut(s)	56, 90, 153
NciI	CCSGG	1 cut(s)	123
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	603, 752
NlaIII	CATG	6 cut(s)	64, 97, 142, 382, 448, 704
NmuCI	GTSAC	1 cut(s)	718
OliI	CACNNNNGTG	1 cut(s)	727
PagI	TCATGA	1 cut(s)	138
PctI	GAATGC	1 cut(s)	188
PfeI	GAWTC	2 cut(s)	214, 478
PfoI	TCCNGGA	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	86, 685
PleI	GAGTC	2 cut(s)	94, 345
PpsI	GAGTC	2 cut(s)	94, 345
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PsuI	RGATCY	1 cut(s)	752
RsaI	GTAC	2 cut(s)	68, 176
RsaNI	GTAC	2 cut(s)	67, 175
RseI	CAYNNNNRTG	1 cut(s)	727
SalI	GTCGAC	1 cut(s)	301
SaqAI	TTAA	2 cut(s)	6, 757
SatI	GCNGC	2 cut(s)	85, 684
Sau3AI	GATC	2 cut(s)	603, 752
SchI	GAGTC	2 cut(s)	94, 346
ScrFI	CCNGG	2 cut(s)	123, 284
SduI	GDGCHC	3 cut(s)	34, 52, 700
SetI	ASST	7 cut(s)	235, 274, 386, 512, 522, 667, 731
SfaNI	GCATC	2 cut(s)	316, 405
SmiMI	CAYNNNNRTG	1 cut(s)	727
Sse9I	AATT	3 cut(s)	151, 195, 204
SsiI	CCGC	4 cut(s)	84, 87, 147, 683
SspI	AATATT	1 cut(s)	534
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	2 cut(s)	121, 282
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	637
TaqI	TCGA	2 cut(s)	261, 302
TasI	AATT	3 cut(s)	151, 195, 204
TatI	WGTACW	2 cut(s)	66, 174
TauI	GCSGC	2 cut(s)	87, 686
TfiI	GAWTC	2 cut(s)	214, 478
Tru1I	TTAA	2 cut(s)	6, 757
Tru9I	TTAA	2 cut(s)	6, 757
TscAI	CASTG	3 cut(s)	23, 640, 700
TseFI	GTSAC	1 cut(s)	718
Tsp45I	GTSAC	1 cut(s)	718
TspDTI	ATGAA	1 cut(s)	155
TspRI	CASTG	3 cut(s)	23, 640, 700
XmiI	GTMKAC	1 cut(s)	302
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.