Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001502

Physical Location & Seq

Genomic Coordinates Forward (+)

25901604 .. 25902290

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56249

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

ATGATTATTCTGATTGATTTGATTCTGCACAAGAAGAAAGCTTATACCCATTTGCTATATAATGTGATTGACTCGCAAGCTCCCGCCTTTCAGGGTTTAGTGGAATTCAGCTTTCGGGTTTCTTCTTTTGGATGCTTGTTTCCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arv1

Protein Analysis

49

Amino Acids

5.63

Weight (kDa)

7.94

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arv1	PF04161	1 - 31	2.6e-08	Arv1-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01020 AT1G01020 AT1G01020 AT1G01020 AT1G01020 AT1G01020 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510
fragaria_vesca	FvH4_7g17940 FvH4_7g17940 FvH4_7g17940 FvH4_7g17940
malus_domestica	MD01G1091900.v1.1 MD07G1162500.v1.1 MD07G1162600.v1.1
prunus_persica	Prupe.2G201100_v2.0.a1 Prupe.2G201100_v2.0.a1
pyrus_communis	pycom01g11580 pycom07g15760
rosa_chinensis	RchiOBHm_Chr1g0333691 RchiOBHm_Chr1g0361381 RchiOBHm_Chr1g0361671
rosa_multiflora	Rmu_sc0002621.1_g000016
rosa_roxburghii	Rroxscaffold_177G00434170 Rroxscaffold_4G00294960 Rroxscaffold_4G00295000
rosa_rugosa	Rorug01G0289100 Rorug01G0289200 Rorug01G0289300 Rorug07G0273800
rosa_samantha	Rh1AG112400 Rh1AG133400 Rh1AG134200 Rh1AG300000 Rh1CG065800 Rh1CG066000 Rh1CG127700 Rh1CG281300 Rh1CG282000 Rh2AG320800 Rh2AG329800 Rh4AG149900 Rh4CG344500 Rh6AG000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	104
AluBI	AGCT	3 cut(s)	41, 80, 111
AluI	AGCT	3 cut(s)	41, 80, 111
ApoI	RAATTY	1 cut(s)	104
BmsI	GCATC	1 cut(s)	122
BseGI	GGATG	1 cut(s)	137
BsgI	GTGCAG	1 cut(s)	11
BspACI	CCGC	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	78
CviJI	RGCY	3 cut(s)	41, 80, 111
CviKI_1	RGCY	3 cut(s)	41, 80, 111
EcoRI	GAATTC	1 cut(s)	104
FaiI	YATR	3 cut(s)	45, 58, 60
FauI	CCCGC	1 cut(s)	91
FokI	GGATG	1 cut(s)	144
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	2 cut(s)	22, 71
Hpy188I	TCNGA	1 cut(s)	12
HpyCH4V	TGCA	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	1 cut(s)	77
LweI	GCATC	1 cut(s)	122
MboII	GAAGA	2 cut(s)	46, 114
MluCI	AATT	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
SchI	GAGTC	1 cut(s)	65
SetI	ASST	3 cut(s)	43, 82, 113
SfaNI	GCATC	1 cut(s)	122
SgeI	CNNG	6 cut(s)	43, 85, 89, 95, 104, 128
Sse9I	AATT	1 cut(s)	104
SsiI	CCGC	1 cut(s)	84
TasI	AATT	1 cut(s)	104
TfiI	GAWTC	1 cut(s)	22
XapI	RAATTY	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.