MD07G1162600.v1.1

Protein arv1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0001502
Physical Location & Seq
Forward (+)
23758537 .. 23759431
895 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1162600.v1.1.491

Sequence Viewer

Length: 195 bp
ATGTTTCTTATTGCAATGATGGTATGGGAATATCCTTCTGTGATTTTGATCATTGATATATTTGTTTCATCATCCAACACTGTGGCACTCAAAGTGATAGCTCGGTCACCTATGAGTAGATGTATAGCAGCCTGCTTCAGTGCTCATGTGGTAAAGGTTTTGGTCACACAAAGGTGCTGGAGTTGGGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arv1

Protein Analysis

65

Amino Acids

7.26

Weight (kDa)

8.63

Isoelectric Point (pI)

46.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 121
AleI CACNNNNGTG 1 cut(s) 172
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw21I GWGCWC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 13
BclI TGATCA 1 cut(s) 48
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
BsaBI GATNNNNATC 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 21
Bse8I GATNNNNATC 1 cut(s) 47
BseGI GGATG 1 cut(s) 71
BseJI GATNNNNATC 1 cut(s) 47
BseMI GCAATG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 140
BsiHKAI GWGCWC 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 1 cut(s) 48
BsrDI GCAATG 1 cut(s) 21
BssMI GATC 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 133
BstEII GGTNACC 1 cut(s) 105
BstF5I GGATG 1 cut(s) 71
BstKTI GATC 1 cut(s) 51
BstMBI GATC 1 cut(s) 48
BstPI GGTNACC 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 140
BstXI CCANNNNNNTGG 1 cut(s) 82
BtsCI GGATG 1 cut(s) 71
BtsIMutI CAGTG 2 cut(s) 78, 145
Cac8I GCNNGC 1 cut(s) 133
CviAII CATG 1 cut(s) 146
CviJI RGCY 2 cut(s) 101, 131
CviKI_1 RGCY 2 cut(s) 101, 131
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 121
Eco91I GGTNACC 1 cut(s) 105
EcoO65I GGTNACC 1 cut(s) 105
FaeI CATG 1 cut(s) 149
FaiI YATR 5 cut(s) 25, 59, 113, 125, 147
FatI CATG 1 cut(s) 145
FbaI TGATCA 1 cut(s) 48
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 1 cut(s) 58
Fsp4HI GCNGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 129
Hin1II CATG 1 cut(s) 149
HphI GGTGA 1 cut(s) 99
HpyAV CCTTC 1 cut(s) 45
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4V TGCA 1 cut(s) 14
Hsp92II CATG 1 cut(s) 149
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 1 cut(s) 48
LpnPI CCDG 2 cut(s) 145, 163
Lsp1109I GCAGC 1 cut(s) 140
MaeIII GTNAC 2 cut(s) 105, 163
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MhlI GDGCHC 1 cut(s) 145
MmeI TCCRAC 1 cut(s) 99
MslI CAYNNNNRTG 1 cut(s) 172
NdeII GATC 1 cut(s) 48
NlaIII CATG 1 cut(s) 149
NmuCI GTSAC 2 cut(s) 105, 163
OliI CACNNNNGTG 1 cut(s) 172
PkrI GCNGC 1 cut(s) 130
PspEI GGTNACC 1 cut(s) 105
RseI CAYNNNNRTG 1 cut(s) 172
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 1 cut(s) 48
SduI GDGCHC 1 cut(s) 145
SetI ASST 4 cut(s) 103, 112, 159, 176
SgeI CNNG 4 cut(s) 114, 144, 158, 190
SmiMI CAYNNNNRTG 1 cut(s) 172
TaaI ACNGT 1 cut(s) 82
TaqII GACCGA 1 cut(s) 93
TscAI CASTG 2 cut(s) 85, 145
TseFI GTSAC 2 cut(s) 105, 163
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 2 cut(s) 105, 163
TspDTI ATGAA 1 cut(s) 57
TspRI CASTG 2 cut(s) 85, 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.