FvH4_7g17940

Protein arv1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001502
Physical Location & Seq
Forward (+)
15104923 .. 15107526
2604 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g17940.t2

Sequence Viewer

Length: 717 bp
ATGGAGTATCGATGTGTGGAATGTGGAGCAAGAATGATGAGGCTTTTCGTTCAATACTCACCCGGAAACATTCGACTCATGAAATGCGGTAATTGCAAGGCAGTTGCGGACGAGTACATCGAGTGCGAGCCCATAATTATTCTGATTGATTTGATTCTGCACAAGAAGAAAGCTTATACCCATTTGCTATATAATGTGATCGACCCTCAAGCTCCCGCCTTTCAGGGTTTGTTGTGGAAGTCAGCTTTGGGGTTTCTTCTTTTGGATGTTTATAGGAGTCTCTTTCTGGAAAGGACCAAGGAAGAATGGGGTTTGTCTATGAGCTTTGCTTCATTGCTTTGGAGTTTTCAAAATATGCTCATGGATGTTGTCTTTGGGAATTTCTTGTTTGTTTCTACCTTTCTGCTTGCTACGAGGGCTCTTTTCAGTACATTCTGTAGATCACTCGGGTACAAGGACCTTCTGCTGGCAATACTTATTTCAAGTTACTTCAAGATGTTTCTAATTGCAATGATGGTCTGGGAATGTCCTTCTGTGATTTTGATCATTGATTTATTTGTATTATCGTCCAACACTGTGGCACTCAAAGGTCAGATGATAAAGATTTTACAGTCTTGGATATCATTGTACAGTTTTCAATTTCAATATATACATCGCTATTTATGCCTGGTATCTGCTAAATGCATATATTCAAGTAGTTTCTGCTTTGTAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arv1

Protein Analysis

239

Amino Acids

27.56

Weight (kDa)

8.64

Isoelectric Point (pI)

39.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arv1 PF04161 4 - 140 4.4e-37 Arv1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 87, 107, 216
AcsI RAATTY 1 cut(s) 379
AfaI GTAC 4 cut(s) 116, 430, 452, 629
AfiI CCNNNNNNNGG 1 cut(s) 466
AgsI TTSAA 7 cut(s) 53, 350, 483, 493, 638, 644, 693
AjnI CCWGG 1 cut(s) 666
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AluBI AGCT 4 cut(s) 173, 212, 245, 324
AluI AGCT 4 cut(s) 173, 212, 245, 324
Alw26I GTCTC 1 cut(s) 284
Ama87I CYCGRG 1 cut(s) 446
ApoI RAATTY 1 cut(s) 379
AspS9I GGNCC 2 cut(s) 294, 457
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 51
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 2 cut(s) 294, 457
BanII GRGCYC 2 cut(s) 132, 421
BccI CCATC 1 cut(s) 508
BciT130I CCWGG 1 cut(s) 668
BclI TGATCA 1 cut(s) 543
BcnI CCSGG 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 284
BfmI CTRYAG 1 cut(s) 436
Bme1390I CCNGG 2 cut(s) 63, 668
Bme18I GGWCC 2 cut(s) 294, 457
BmeT110I CYCGRG 1 cut(s) 446
BmgT120I GGNCC 2 cut(s) 294, 457
BmrFI CCNGG 2 cut(s) 63, 668
BpuEI CTTGAG 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 63
Bsa29I ATCGAT 1 cut(s) 10
BsaBI GATNNNNATC 1 cut(s) 542
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 466
Bse3DI GCAATG 2 cut(s) 332, 516
Bse8I GATNNNNATC 1 cut(s) 542
BseBI CCWGG 1 cut(s) 668
BseCI ATCGAT 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 2 cut(s) 271, 370
BseJI GATNNNNATC 1 cut(s) 542
BseLI CCNNNNNNNGG 1 cut(s) 466
BseMI GCAATG 2 cut(s) 332, 516
BsgI GTGCAG 1 cut(s) 143
BshVI ATCGAT 1 cut(s) 10
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 466
BsmAI GTCTC 1 cut(s) 284
BsoBI CYCGRG 1 cut(s) 446
Bsp1286I GDGCHC 2 cut(s) 132, 421
Bsp1407I TGTACA 1 cut(s) 627
Bsp143I GATC 3 cut(s) 198, 440, 543
BspACI CCGC 3 cut(s) 87, 107, 216
BspDI ATCGAT 1 cut(s) 10
BspHI TCATGA 1 cut(s) 78
BsrDI GCAATG 2 cut(s) 332, 516
BsrGI TGTACA 1 cut(s) 627
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 3 cut(s) 198, 440, 543
BssT1I CCWWGG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 668
Bst4CI ACNGT 3 cut(s) 577, 612, 632
BstAUI TGTACA 1 cut(s) 627
BstC8I GCNNGC 3 cut(s) 128, 408, 468
BstF5I GGATG 2 cut(s) 271, 370
BstKTI GATC 3 cut(s) 201, 443, 546
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 3 cut(s) 198, 440, 543
BstMWI GCNNNNNNNGC 3 cut(s) 93, 416, 663
BstNI CCWGG 1 cut(s) 668
BstSCI CCNGG 2 cut(s) 61, 666
BstSFI CTRYAG 1 cut(s) 436
BstXI CCANNNNNNTGG 1 cut(s) 577
Bsu15I ATCGAT 1 cut(s) 10
BsuTUI ATCGAT 1 cut(s) 10
BtgZI GCGATG 1 cut(s) 638
BtsCI GGATG 2 cut(s) 271, 370
BtsIMutI CAGTG 1 cut(s) 573
Cac8I GCNNGC 3 cut(s) 128, 408, 468
CciI TCATGA 1 cut(s) 78
Cfr13I GGNCC 2 cut(s) 294, 457
ClaI ATCGAT 1 cut(s) 10
Csp6I GTAC 4 cut(s) 115, 429, 451, 628
CviAII CATG 2 cut(s) 79, 361
CviJI RGCY 7 cut(s) 43, 130, 173, 212, 245, 324, 419
CviKI_1 RGCY 7 cut(s) 43, 130, 173, 212, 245, 324, 419
CviQI GTAC 4 cut(s) 115, 429, 451, 628
DpnI GATC 3 cut(s) 200, 442, 545
DpnII GATC 3 cut(s) 198, 440, 543
Eco130I CCWWGG 1 cut(s) 297
Eco24I GRGCYC 2 cut(s) 132, 421
Eco32I GATATC 1 cut(s) 621
Eco47I GGWCC 2 cut(s) 294, 457
Eco88I CYCGRG 1 cut(s) 446
EcoO109I RGGNCCY 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 666
EcoRV GATATC 1 cut(s) 621
EcoT14I CCWWGG 1 cut(s) 297
EcoT22I ATGCAT 1 cut(s) 686
EcoT38I GRGCYC 2 cut(s) 132, 421
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 2 cut(s) 82, 364
FatI CATG 2 cut(s) 78, 360
FauI CCCGC 1 cut(s) 223
FbaI TGATCA 1 cut(s) 543
FokI GGATG 2 cut(s) 278, 377
FriOI GRGCYC 2 cut(s) 132, 421
HapII CCGG 1 cut(s) 63
Hin1II CATG 2 cut(s) 82, 364
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 3 cut(s) 75, 154, 277
HpaII CCGG 1 cut(s) 63
HphI GGTGA 1 cut(s) 51
Hpy188I TCNGA 2 cut(s) 144, 594
Hpy188III TCNNGA 3 cut(s) 79, 287, 493
HpyAV CCTTC 2 cut(s) 470, 540
HpyCH4III ACNGT 3 cut(s) 577, 612, 632
HpyCH4V TGCA 4 cut(s) 96, 160, 509, 684
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 416, 663
Hsp92II CATG 2 cut(s) 82, 364
Ksp22I TGATCA 1 cut(s) 543
Kzo9I GATC 3 cut(s) 198, 440, 543
LmnI GCTCC 2 cut(s) 26, 217
LpnPI CCDG 7 cut(s) 76, 209, 272, 452, 505, 653, 680
MaeIII GTNAC 1 cut(s) 485
MalI GATC 3 cut(s) 200, 442, 545
MboI GATC 3 cut(s) 198, 440, 543
MboII GAAGA 3 cut(s) 178, 248, 314
MhlI GDGCHC 2 cut(s) 132, 421
MluCI AATT 5 cut(s) 91, 135, 379, 504, 638
MlyI GAGTC 2 cut(s) 69, 286
MmeI TCCRAC 1 cut(s) 594
MnlI CCTC 3 cut(s) 33, 216, 408
Mph1103I ATGCAT 1 cut(s) 686
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 2 cut(s) 63, 668
MvaI CCWGG 1 cut(s) 668
MwoI GCNNNNNNNGC 3 cut(s) 93, 416, 663
NciI CCSGG 1 cut(s) 63
NdeII GATC 3 cut(s) 198, 440, 543
NlaIII CATG 2 cut(s) 82, 364
NsiI ATGCAT 1 cut(s) 686
PagI TCATGA 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PfeI GAWTC 1 cut(s) 154
PleI GAGTC 2 cut(s) 69, 285
PpsI GAGTC 2 cut(s) 69, 285
PpuMI RGGWCCY 1 cut(s) 457
Psp5II RGGWCCY 1 cut(s) 457
Psp6I CCWGG 1 cut(s) 666
PspGI CCWGG 1 cut(s) 666
PspPI GGNCC 2 cut(s) 294, 457
PspPPI RGGWCCY 1 cut(s) 457
RsaI GTAC 4 cut(s) 116, 430, 452, 629
RsaNI GTAC 4 cut(s) 115, 429, 451, 628
Sau3AI GATC 3 cut(s) 198, 440, 543
Sau96I GGNCC 2 cut(s) 294, 457
SchI GAGTC 2 cut(s) 69, 286
ScrFI CCNGG 2 cut(s) 63, 668
SduI GDGCHC 2 cut(s) 132, 421
SetI ASST 7 cut(s) 175, 214, 247, 326, 401, 462, 592
SfcI CTRYAG 1 cut(s) 436
SinI GGWCC 2 cut(s) 294, 457
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
Sse9I AATT 5 cut(s) 91, 135, 379, 504, 638
SsiI CCGC 3 cut(s) 87, 107, 216
StyD4I CCNGG 2 cut(s) 61, 666
StyI CCWWGG 1 cut(s) 297
TaaI ACNGT 3 cut(s) 577, 612, 632
TaqI TCGA 4 cut(s) 10, 73, 120, 201
TasI AATT 5 cut(s) 91, 135, 379, 504, 638
TatI WGTACW 3 cut(s) 114, 428, 627
TfiI GAWTC 1 cut(s) 154
TscAI CASTG 1 cut(s) 580
TspDTI ATGAA 2 cut(s) 95, 321
TspRI CASTG 1 cut(s) 580
VpaK11BI GGWCC 2 cut(s) 294, 457
XapI RAATTY 1 cut(s) 379
Zsp2I ATGCAT 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.