MD01G1091900.v1.1

Protein arv1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0001502
Physical Location & Seq
Forward (+)
20685985 .. 20688434
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1091900.v1.1.491

Sequence Viewer

Length: 699 bp
ATGGAGTACAGATGTGTAGAGTGCGGCGGTCGCATGACGACTCTGTTCGTCCAATACTCTCCCGGCAACATTCGTCTCATGAAATGCGGTAATTGCAAGGCAGTTGCAGACGAGTACATTGAATGCGAACCCATAATTATTCTAATTGATTTGATTCTGCACAAGACCAAAGCTTATACACATTTACTCTATAATGTCATCGACCCACAAGCTCCTTCTTTCCAGGGTTTATTGTGGAAGTCGACTTTCGGGTTTCTTCTGCTGGATGCTTATAGGAGTCTCTTTTTGGAAAGAAGCAAGGAAGAATGGGGCTTGTCCATGAGCTTCGCCTCTTTACTTTGGAGATTTCAAAAGATGCTGATGGATATCGTCTTTGGAAATATCATGTTTCTTTCTACATTTTTACTTGCTATGAGGATTCTTTTCAGCACATTCCCTAGACCACTCAGGTATAAAGAGCTTCTGCTTGCAATATTTATTTCAAGTTACTTCAAGATGTTTCTTATTGCAATGATGGTCTGGGAATGTCCTTCTGTGATTTTGATCGTTGATTTATTTGTTTTATCATCCAACACTGTGGCACTCAAAGTAATAACTCGGTCAGCTATGAGTAGATGTATAGCGGCGTGCTTCAGTGCTCATGTGGTAAAGTTTTTGGTCACACAAAGGTGCTGGAGTTGGGAACTTTTTAGATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arv1

Protein Analysis

233

Amino Acids

26.96

Weight (kDa)

8.97

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arv1 PF04161 4 - 195 1e-50 Arv1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 242
AciI CCGC 4 cut(s) 24, 27, 87, 623
AcuI CTGAAG 1 cut(s) 616
AfaI GTAC 2 cut(s) 8, 116
AgsI TTSAA 4 cut(s) 122, 350, 483, 493
AjnI CCWGG 1 cut(s) 222
AleI CACNNNNGTG 1 cut(s) 667
AluBI AGCT 5 cut(s) 173, 212, 324, 460, 605
AluI AGCT 5 cut(s) 173, 212, 324, 460, 605
Alw21I GWGCWC 1 cut(s) 640
Alw26I GTCTC 2 cut(s) 80, 284
AsuC2I CCSGG 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 640
BccI CCATC 2 cut(s) 355, 508
BciT130I CCWGG 1 cut(s) 224
BcnI CCSGG 1 cut(s) 63
BcoDI GTCTC 2 cut(s) 80, 284
BfaI CTAG 1 cut(s) 438
BglII AGATCT 1 cut(s) 692
BisI GCNGC 2 cut(s) 25, 624
BlsI GCNGC 2 cut(s) 26, 625
Bme1390I CCNGG 2 cut(s) 63, 224
BmrFI CCNGG 2 cut(s) 63, 224
BmsI GCATC 2 cut(s) 256, 345
BpmI CTGGAG 1 cut(s) 694
BpuMI CCSGG 1 cut(s) 63
BsaBI GATNNNNATC 2 cut(s) 365, 542
BsaJI CCNNGG 1 cut(s) 223
Bse3DI GCAATG 1 cut(s) 516
Bse8I GATNNNNATC 2 cut(s) 365, 542
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 2 cut(s) 271, 566
BseJI GATNNNNATC 2 cut(s) 365, 542
BseMI GCAATG 1 cut(s) 516
BseMII CTCAG 1 cut(s) 460
BsgI GTGCAG 1 cut(s) 143
Bsh1285I CGRYCG 1 cut(s) 31
BsiEI CGRYCG 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 640
BsiSI CCGG 1 cut(s) 63
BsmAI GTCTC 2 cut(s) 80, 284
BsmBI CGTCTC 1 cut(s) 80
BsmI GAATGC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 640
Bsp143I GATC 2 cut(s) 543, 692
BspACI CCGC 4 cut(s) 24, 27, 87, 623
BspCNI CTCAG 1 cut(s) 459
BspHI TCATGA 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 516
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 2 cut(s) 543, 692
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 577
BstC8I GCNNGC 2 cut(s) 468, 628
BstDEI CTNAG 1 cut(s) 446
BstF5I GGATG 2 cut(s) 271, 566
BstKTI GATC 2 cut(s) 546, 695
BstMAI GTCTC 2 cut(s) 80, 284
BstMBI GATC 2 cut(s) 543, 692
BstMCI CGRYCG 1 cut(s) 31
BstMWI GCNNNNNNNGC 2 cut(s) 30, 93
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 2 cut(s) 61, 222
BstX2I RGATCY 1 cut(s) 692
BstXI CCANNNNNNTGG 1 cut(s) 577
BstYI RGATCY 1 cut(s) 692
BtsCI GGATG 2 cut(s) 271, 566
BtsIMutI CAGTG 2 cut(s) 573, 640
Cac8I GCNNGC 2 cut(s) 468, 628
CciI TCATGA 1 cut(s) 78
Csp6I GTAC 2 cut(s) 7, 115
CviAII CATG 5 cut(s) 34, 79, 319, 385, 641
CviJI RGCY 6 cut(s) 173, 212, 312, 324, 460, 605
CviKI_1 RGCY 6 cut(s) 173, 212, 312, 324, 460, 605
CviQI GTAC 2 cut(s) 7, 115
DdeI CTNAG 1 cut(s) 446
DpnI GATC 2 cut(s) 545, 694
DpnII GATC 2 cut(s) 543, 692
Eco32I GATATC 1 cut(s) 367
Eco57I CTGAAG 1 cut(s) 616
EcoRII CCWGG 1 cut(s) 222
EcoRV GATATC 1 cut(s) 367
Esp3I CGTCTC 1 cut(s) 80
FaeI CATG 5 cut(s) 37, 82, 322, 388, 644
FatI CATG 5 cut(s) 33, 78, 318, 384, 640
FblI GTMKAC 1 cut(s) 242
Fnu4HI GCNGC 2 cut(s) 25, 624
FokI GGATG 2 cut(s) 278, 553
Fsp4HI GCNGC 2 cut(s) 25, 624
FspBI CTAG 1 cut(s) 438
GluI GCNGC 2 cut(s) 25, 624
GsuI CTGGAG 1 cut(s) 694
HapII CCGG 1 cut(s) 63
Hin1II CATG 5 cut(s) 37, 82, 322, 388, 644
HincII GTYRAC 1 cut(s) 243
HindII GTYRAC 1 cut(s) 243
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 4 cut(s) 40, 154, 277, 418
HpaII CCGG 1 cut(s) 63
Hpy166II GTNNAC 1 cut(s) 243
Hpy188III TCNNGA 2 cut(s) 79, 493
Hpy8I GTNNAC 1 cut(s) 243
HpyAV CCTTC 2 cut(s) 225, 540
HpyCH4III ACNGT 1 cut(s) 577
HpyCH4V TGCA 5 cut(s) 96, 107, 160, 470, 509
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 93
HpyF3I CTNAG 1 cut(s) 446
Hsp92II CATG 5 cut(s) 37, 82, 322, 388, 644
Kzo9I GATC 2 cut(s) 543, 692
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 7 cut(s) 76, 209, 236, 248, 433, 505, 658
LweI GCATC 2 cut(s) 256, 345
MaeI CTAG 1 cut(s) 438
MaeIII GTNAC 2 cut(s) 485, 658
MalI GATC 2 cut(s) 545, 694
MboI GATC 2 cut(s) 543, 692
MboII GAAGA 2 cut(s) 248, 314
MflI RGATCY 1 cut(s) 692
MhlI GDGCHC 1 cut(s) 640
MluCI AATT 3 cut(s) 91, 135, 144
MlyI GAGTC 2 cut(s) 34, 286
MmeI TCCRAC 1 cut(s) 594
MnlI CCTC 2 cut(s) 340, 408
MseI TTAA 1 cut(s) 697
MslI CAYNNNNRTG 1 cut(s) 667
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 2 cut(s) 63, 224
Mva1269I GAATGC 1 cut(s) 128
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 30, 93
NciI CCSGG 1 cut(s) 63
NdeII GATC 2 cut(s) 543, 692
NlaIII CATG 5 cut(s) 37, 82, 322, 388, 644
NmuCI GTSAC 1 cut(s) 658
OliI CACNNNNGTG 1 cut(s) 667
PagI TCATGA 1 cut(s) 78
PctI GAATGC 1 cut(s) 128
PfeI GAWTC 2 cut(s) 154, 418
PkrI GCNGC 2 cut(s) 26, 625
PleI GAGTC 2 cut(s) 34, 285
PpsI GAGTC 2 cut(s) 34, 285
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PsuI RGATCY 1 cut(s) 692
RsaI GTAC 2 cut(s) 8, 116
RsaNI GTAC 2 cut(s) 7, 115
RseI CAYNNNNRTG 1 cut(s) 667
SalI GTCGAC 1 cut(s) 241
SaqAI TTAA 1 cut(s) 697
SatI GCNGC 2 cut(s) 25, 624
Sau3AI GATC 2 cut(s) 543, 692
SchI GAGTC 2 cut(s) 34, 286
ScrFI CCNGG 2 cut(s) 63, 224
SduI GDGCHC 1 cut(s) 640
SetI ASST 7 cut(s) 175, 214, 326, 452, 462, 607, 671
SfaNI GCATC 2 cut(s) 256, 345
SmiMI CAYNNNNRTG 1 cut(s) 667
Sse9I AATT 3 cut(s) 91, 135, 144
SsiI CCGC 4 cut(s) 24, 27, 87, 623
SspI AATATT 1 cut(s) 474
SspMI CTAG 1 cut(s) 438
StyD4I CCNGG 2 cut(s) 61, 222
TaaI ACNGT 1 cut(s) 577
TaqI TCGA 2 cut(s) 201, 242
TaqII GACCGA 1 cut(s) 588
TasI AATT 3 cut(s) 91, 135, 144
TatI WGTACW 2 cut(s) 6, 114
TauI GCSGC 2 cut(s) 27, 626
TfiI GAWTC 2 cut(s) 154, 418
Tru1I TTAA 1 cut(s) 697
Tru9I TTAA 1 cut(s) 697
TscAI CASTG 2 cut(s) 580, 640
TseFI GTSAC 1 cut(s) 658
Tsp45I GTSAC 1 cut(s) 658
TspDTI ATGAA 1 cut(s) 95
TspRI CASTG 2 cut(s) 580, 640
XmiI GTMKAC 1 cut(s) 242
XspI CTAG 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.