Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002621.1

Orthogroup ID

OG0001502

Physical Location & Seq

Genomic Coordinates Reverse (-)

86880 .. 88869

Gene Structure 1990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002621.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgaccgtccttcgcctccgtcctcctcaccggcaagcattcatgctgagatccatcgccgcggccaacgctgccaactgcaaaatcagctcgaagtcggacccagggatcgacgaccccgacccggagctaaagtcgaagctgatgtgcgggctgttcaccggcgtcaaactcgaggttagtagggagaactccacttgtgcacttgcaaatttcttgatggagcgtaatctgagaaatgattctgaatctccaatgaggggccatgggatcgatgagaatgattcagtagctatgatgagggctgctgaggaagcattggaagcacagaaaaagcaaaaaccttcgtttgagctatctggaaaacttgctgcggaaaccaatagatttagggggttcctgatggattctgaagcagaagctcttgaggagaagctgacgtctttgtttggtcagctccgagctgagtgtgctattcttgaaagagtggtctacaagaacaagaaccagcatagacgttcctcgtacttccagtacctaatgaaggtccacaacttctacaccttgtttacaattgtgaaatttttatgtcgaactttccattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4477

Protein Analysis

201

Amino Acids

22.9

Weight (kDa)

8.98

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01020 AT1G01020 AT1G01020 AT1G01020 AT1G01020 AT1G01020 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510 AT4G01510
fragaria_vesca	FvH4_7g17940 FvH4_7g17940 FvH4_7g17940 FvH4_7g17940
malus_domestica	MD01G1091900.v1.1 MD07G1162500.v1.1 MD07G1162600.v1.1
prunus_persica	Prupe.2G201100_v2.0.a1 Prupe.2G201100_v2.0.a1
pyrus_communis	pycom01g11580 pycom07g15760
rosa_chinensis	RchiOBHm_Chr1g0333691 RchiOBHm_Chr1g0361381 RchiOBHm_Chr1g0361671
rosa_multiflora	Rmu_sc0002621.1_g000016
rosa_roxburghii	Rroxscaffold_177G00434170 Rroxscaffold_4G00294960 Rroxscaffold_4G00295000
rosa_rugosa	Rorug01G0289100 Rorug01G0289200 Rorug01G0289300 Rorug07G0273800
rosa_samantha	Rh1AG112400 Rh1AG133400 Rh1AG134200 Rh1AG300000 Rh1CG065800 Rh1CG066000 Rh1CG127700 Rh1CG281300 Rh1CG282000 Rh2AG320800 Rh2AG329800 Rh4AG149900 Rh4CG344500 Rh6AG000700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	492
AccII	CGCG	1 cut(s)	62
AciI	CCGC	4 cut(s)	60, 62, 150, 374
AclWI	GGATC	3 cut(s)	45, 116, 278
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	2 cut(s)	211, 581
AcuI	CTGAAG	1 cut(s)	432
AcyI	GRCGYC	2 cut(s)	165, 440
AfaI	GTAC	2 cut(s)	527, 536
AfiI	CCNNNNNNNGG	3 cut(s)	124, 260, 544
AgsI	TTSAA	1 cut(s)	482
AjnI	CCWGG	1 cut(s)	103
AluBI	AGCT	9 cut(s)	90, 130, 142, 293, 355, 422, 436, 457, 464
AluI	AGCT	9 cut(s)	90, 130, 142, 293, 355, 422, 436, 457, 464
Alw21I	GWGCWC	1 cut(s)	205
Alw44I	GTGCAC	1 cut(s)	201
AlwI	GGATC	3 cut(s)	45, 116, 278
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	2 cut(s)	63, 262
ApaLI	GTGCAC	1 cut(s)	201
ApeKI	GCWGC	3 cut(s)	71, 305, 371
ApoI	RAATTY	2 cut(s)	211, 581
Asp700I	GAANNNNTTC	1 cut(s)	241
AspS9I	GGNCC	3 cut(s)	100, 262, 547
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	2 cut(s)	20, 151
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	2 cut(s)	100, 547
BaeGI	GKGCMC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	205
BbvCI	CCTCAGC	1 cut(s)	309
BbvI	GCAGC	3 cut(s)	58, 292, 358
BccI	CCATC	3 cut(s)	62, 214, 397
BciT130I	CCWGG	1 cut(s)	105
BcnI	CCSGG	1 cut(s)	125
BisI	GCNGC	5 cut(s)	60, 63, 72, 306, 372
BlsI	GCNGC	5 cut(s)	61, 64, 73, 307, 373
Bme1390I	CCNGG	2 cut(s)	105, 125
Bme18I	GGWCC	2 cut(s)	100, 547
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	3 cut(s)	100, 262, 547
BmiI	GGNNCC	3 cut(s)	102, 263, 398
BmrFI	CCNGG	2 cut(s)	105, 125
Bpu10I	CCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	446
BpuMI	CCSGG	1 cut(s)	125
Bsa29I	ATCGAT	1 cut(s)	273
BsaHI	GRCGYC	2 cut(s)	165, 440
BsaJI	CCNNGG	4 cut(s)	60, 103, 104, 265
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	3 cut(s)	124, 260, 544
Bse118I	RCCGGY	2 cut(s)	30, 161
Bse1I	ACTGG	1 cut(s)	532
BseBI	CCWGG	1 cut(s)	105
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	4 cut(s)	60, 103, 104, 265
BseLI	CCNNNNNNNGG	3 cut(s)	124, 260, 544
BseMII	CTCAG	4 cut(s)	38, 224, 300, 456
BseNI	ACTGG	1 cut(s)	532
BseRI	GAGGAG	2 cut(s)	15, 443
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	3 cut(s)	58, 292, 358
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	65, 264
BshVI	ATCGAT	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	3 cut(s)	31, 125, 162
BslI	CCNNNNNNNGG	3 cut(s)	124, 260, 544
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	2 cut(s)	65, 264
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	3 cut(s)	50, 108, 270
Bsp19I	CCATGG	1 cut(s)	265
BspACI	CCGC	4 cut(s)	60, 62, 150, 374
BspANI	GGCC	2 cut(s)	65, 264
BspCNI	CTCAG	4 cut(s)	39, 225, 301, 457
BspDI	ATCGAT	1 cut(s)	273
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	3 cut(s)	102, 263, 398
BspPI	GGATC	3 cut(s)	45, 116, 278
BsrFI	RCCGGY	2 cut(s)	30, 161
BsrI	ACTGG	1 cut(s)	532
BssAI	RCCGGY	2 cut(s)	30, 161
BssECI	CCNNGG	4 cut(s)	60, 103, 104, 265
BssMI	GATC	3 cut(s)	50, 108, 270
BssNI	GRCGYC	2 cut(s)	165, 440
BssT1I	CCWWGG	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	7
BstACI	GRCGYC	2 cut(s)	165, 440
BstC8I	GCNNGC	2 cut(s)	36, 152
BstDEI	CTNAG	4 cut(s)	47, 233, 309, 465
BstDSI	CCRYGG	2 cut(s)	60, 265
BstENI	CCTNNNNNAGG	1 cut(s)	542
BstFNI	CGCG	1 cut(s)	62
BstKTI	GATC	3 cut(s)	53, 111, 273
BstMBI	GATC	3 cut(s)	50, 108, 270
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 71, 87, 314, 323, 470
BstNI	CCWGG	1 cut(s)	105
BstSCI	CCNGG	2 cut(s)	103, 123
BstSLI	GKGCMC	1 cut(s)	205
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	3 cut(s)	58, 292, 358
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
Bsu15I	ATCGAT	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	65, 264
BsuTUI	ATCGAT	1 cut(s)	273
BtgI	CCRYGG	2 cut(s)	60, 265
BtgZI	GCGATG	1 cut(s)	40
Cac8I	GCNNGC	2 cut(s)	36, 152
Cfr10I	RCCGGY	2 cut(s)	30, 161
Cfr13I	GGNCC	3 cut(s)	100, 262, 547
Cfr42I	CCGCGG	1 cut(s)	63
ClaI	ATCGAT	1 cut(s)	273
CseI	GACGC	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	526, 535
CviAII	CATG	2 cut(s)	43, 266
CviQI	GTAC	2 cut(s)	526, 535
DdeI	CTNAG	4 cut(s)	47, 233, 309, 465
DpnI	GATC	3 cut(s)	52, 110, 272
DpnII	GATC	3 cut(s)	50, 108, 270
EaeI	YGGCCR	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	265
Eco47I	GGWCC	2 cut(s)	100, 547
Eco57I	CTGAAG	1 cut(s)	432
Eco88I	CYCGRG	1 cut(s)	173
EcoNI	CCTNNNNNAGG	1 cut(s)	542
EcoRII	CCWGG	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	265
FaeI	CATG	2 cut(s)	46, 269
FaiI	YATR	5 cut(s)	44, 267, 296, 513, 589
FatI	CATG	2 cut(s)	42, 265
FauI	CCCGC	1 cut(s)	143
FblI	GTMKAC	1 cut(s)	492
Fnu4HI	GCNGC	5 cut(s)	60, 63, 72, 306, 372
Fsp4HI	GCNGC	5 cut(s)	60, 63, 72, 306, 372
GluI	GCNGC	5 cut(s)	60, 63, 72, 306, 372
HaeIII	GGCC	2 cut(s)	65, 264
HapII	CCGG	3 cut(s)	31, 125, 162
HgaI	GACGC	1 cut(s)	154
Hin1I	GRCGYC	2 cut(s)	165, 440
Hin1II	CATG	2 cut(s)	46, 269
HinfI	GANTC	4 cut(s)	242, 248, 284, 407
HpaII	CCGG	3 cut(s)	31, 125, 162
HphI	GGTGA	2 cut(s)	20, 151
Hpy166II	GTNNAC	5 cut(s)	159, 203, 493, 550, 570
Hpy188I	TCNGA	5 cut(s)	100, 234, 247, 412, 461
Hpy188III	TCNNGA	5 cut(s)	217, 360, 400, 425, 479
Hpy8I	GTNNAC	5 cut(s)	159, 203, 493, 550, 570
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	3 cut(s)	20, 354, 538
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4IV	ACGT	2 cut(s)	440, 517
HpyCH4V	TGCA	3 cut(s)	81, 203, 209
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 71, 87, 314, 323, 470
HpyF3I	CTNAG	4 cut(s)	47, 233, 309, 465
HpySE526I	ACGT	2 cut(s)	440, 517
Hsp92I	GRCGYC	2 cut(s)	165, 440
Hsp92II	CATG	2 cut(s)	46, 269
KspI	CCGCGG	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	50, 108, 270
LmnI	GCTCC	3 cut(s)	127, 223, 462
LpnPI	CCDG	9 cut(s)	44, 90, 117, 138, 175, 345, 413, 521, 545
Lsp1109I	GCAGC	3 cut(s)	58, 292, 358
MaeII	ACGT	2 cut(s)	440, 517
MalI	GATC	3 cut(s)	52, 110, 272
MboI	GATC	3 cut(s)	50, 108, 270
MfeI	CAATTG	1 cut(s)	573
MflI	RGATCY	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	3 cut(s)	211, 573, 581
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	9 cut(s)	26, 33, 36, 169, 252, 294, 304, 421, 532
MroXI	GAANNNNTTC	1 cut(s)	241
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	3 cut(s)	31, 125, 162
MspR9I	CCNGG	2 cut(s)	105, 125
MunI	CAATTG	1 cut(s)	573
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	1 cut(s)	105
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	6 cut(s)	68, 71, 87, 314, 323, 470
NciI	CCSGG	1 cut(s)	125
NcoI	CCATGG	1 cut(s)	265
NdeII	GATC	3 cut(s)	50, 108, 270
NlaIII	CATG	2 cut(s)	46, 269
NlaIV	GGNNCC	3 cut(s)	102, 263, 398
PaeR7I	CTCGAG	1 cut(s)	173
PasI	CCCWGGG	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PctI	GAATGC	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	241
PfeI	GAWTC	4 cut(s)	242, 248, 284, 407
PkrI	GCNGC	5 cut(s)	61, 64, 73, 307, 373
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
PspN4I	GGNNCC	3 cut(s)	102, 263, 398
PspPI	GGNCC	3 cut(s)	100, 262, 547
PspXI	VCTCGAGB	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	50
RsaI	GTAC	2 cut(s)	527, 536
RsaNI	GTAC	2 cut(s)	526, 535
SacII	CCGCGG	1 cut(s)	63
SatI	GCNGC	5 cut(s)	60, 63, 72, 306, 372
Sau3AI	GATC	3 cut(s)	50, 108, 270
Sau96I	GGNCC	3 cut(s)	100, 262, 547
ScrFI	CCNGG	2 cut(s)	105, 125
SduI	GDGCHC	1 cut(s)	205
Sfr274I	CTCGAG	1 cut(s)	173
Sfr303I	CCGCGG	1 cut(s)	63
SgrAI	CRCCGGYG	1 cut(s)	161
SgrBI	CCGCGG	1 cut(s)	63
SinI	GGWCC	2 cut(s)	100, 547
SlaI	CTCGAG	1 cut(s)	173
SmlI	CTYRAG	2 cut(s)	173, 425
SmoI	CTYRAG	2 cut(s)	173, 425
Sse9I	AATT	3 cut(s)	211, 573, 581
SsiI	CCGC	4 cut(s)	60, 62, 150, 374
StyD4I	CCNGG	2 cut(s)	103, 123
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	1 cut(s)	7
TaiI	ACGT	2 cut(s)	443, 520
TaqI	TCGA	6 cut(s)	92, 111, 137, 174, 273, 592
TasI	AATT	3 cut(s)	211, 573, 581
TauI	GCSGC	2 cut(s)	62, 65
TfiI	GAWTC	4 cut(s)	242, 248, 284, 407
TseI	GCWGC	3 cut(s)	71, 305, 371
TspDTI	ATGAA	2 cut(s)	31, 557
TspGWI	ACGGA	1 cut(s)	8
VneI	GTGCAC	1 cut(s)	201
VpaK11BI	GGWCC	2 cut(s)	100, 547
XagI	CCTNNNNNAGG	1 cut(s)	542
XapI	RAATTY	2 cut(s)	211, 581
XhoI	CTCGAG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	492
XmnI	GAANNNNTTC	1 cut(s)	241
ZraI	GACGTC	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.