Rh1AG300000

Protein arv1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0001502
Physical Location & Seq
Forward (+)
53165400 .. 53226058
60659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG300000.1

Sequence Viewer

Length: 396 bp
ATGGAGTATCGATGTGTGGAATGTGGGGCTCGAATGATGAGGCTTTTCGTTCAATACTCACCTGGAAATATTCGACTCATGAAATGCGATAATTGCAAGGCAGTTGCGGACGAGTACATCGAGTGCGAGCCCATAATTATTCTGATTGATTTGATTCTGCACAAGAAGAAAGCTTATACCCATTTGCTATATAATGTGATTGACTCGCAAGCTCCCGCCTTTCAGGGTTTGTTGTGGAAGTCAGCTTTCGGGTTTCTTCTTTTGGATGCTTACTGGAGTCTCTTTCTGGAAAGGACCAAGGAAGAATGGGGTTTGTCCATGAGCTTTGCTTCATTGCTTTGGAGGTTTCAAAATGTAGGTAAATTTTGTTGGATTTTATGTGTTTTAGATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arv1

Protein Analysis

131

Amino Acids

15.41

Weight (kDa)

6.7

Isoelectric Point (pI)

41.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arv1 PF04161 4 - 125 4e-36 Arv1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 107, 216
AcsI RAATTY 1 cut(s) 362
AfaI GTAC 1 cut(s) 116
AgsI TTSAA 2 cut(s) 53, 350
AjnI CCWGG 1 cut(s) 61
AluBI AGCT 4 cut(s) 173, 212, 245, 324
AluI AGCT 4 cut(s) 173, 212, 245, 324
Alw26I GTCTC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 362
AspS9I GGNCC 1 cut(s) 294
AsuHPI GGTGA 1 cut(s) 51
AvaII GGWCC 1 cut(s) 294
BanII GRGCYC 2 cut(s) 31, 132
BciT130I CCWGG 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 284
Bme1390I CCNGG 1 cut(s) 63
Bme18I GGWCC 1 cut(s) 294
BmgT120I GGNCC 1 cut(s) 294
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 1 cut(s) 256
BpmI CTGGAG 1 cut(s) 295
Bsa29I ATCGAT 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 278
Bse3DI GCAATG 1 cut(s) 332
BseBI CCWGG 1 cut(s) 63
BseCI ATCGAT 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 271
BseMI GCAATG 1 cut(s) 332
BseNI ACTGG 1 cut(s) 278
BsgI GTGCAG 1 cut(s) 143
BshVI ATCGAT 1 cut(s) 10
BsmAI GTCTC 1 cut(s) 284
Bsp1286I GDGCHC 2 cut(s) 31, 132
BspACI CCGC 2 cut(s) 107, 216
BspDI ATCGAT 1 cut(s) 10
BspHI TCATGA 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 332
BsrI ACTGG 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 297
BssT1I CCWWGG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 63
BstC8I GCNNGC 2 cut(s) 128, 210
BstF5I GGATG 1 cut(s) 271
BstMAI GTCTC 1 cut(s) 284
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstNI CCWGG 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 61
Bsu15I ATCGAT 1 cut(s) 10
BsuTUI ATCGAT 1 cut(s) 10
BtsCI GGATG 1 cut(s) 271
Cac8I GCNNGC 2 cut(s) 128, 210
CciI TCATGA 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 294
ClaI ATCGAT 1 cut(s) 10
Csp6I GTAC 1 cut(s) 115
CviAII CATG 2 cut(s) 79, 319
CviJI RGCY 7 cut(s) 29, 43, 130, 173, 212, 245, 324
CviKI_1 RGCY 7 cut(s) 29, 43, 130, 173, 212, 245, 324
CviQI GTAC 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 297
Eco24I GRGCYC 2 cut(s) 31, 132
Eco47I GGWCC 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 297
EcoT38I GRGCYC 2 cut(s) 31, 132
ErhI CCWWGG 1 cut(s) 297
FaeI CATG 2 cut(s) 82, 322
FaiI YATR 7 cut(s) 80, 134, 177, 190, 192, 320, 379
FatI CATG 2 cut(s) 78, 318
FauI CCCGC 1 cut(s) 223
FokI GGATG 1 cut(s) 278
FriOI GRGCYC 2 cut(s) 31, 132
GsuI CTGGAG 1 cut(s) 295
Hin1II CATG 2 cut(s) 82, 322
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 4 cut(s) 75, 154, 203, 277
HphI GGTGA 1 cut(s) 51
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 2 cut(s) 79, 287
HpyCH4V TGCA 2 cut(s) 96, 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
Hsp92II CATG 2 cut(s) 82, 322
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 5 cut(s) 48, 75, 209, 259, 272
LweI GCATC 1 cut(s) 256
MboII GAAGA 3 cut(s) 178, 248, 314
MhlI GDGCHC 2 cut(s) 31, 132
MluCI AATT 3 cut(s) 91, 135, 362
MlyI GAGTC 3 cut(s) 69, 197, 286
MmeI TCCRAC 1 cut(s) 350
MnlI CCTC 2 cut(s) 33, 336
MspR9I CCNGG 1 cut(s) 63
MvaI CCWGG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 93
NlaIII CATG 2 cut(s) 82, 322
PagI TCATGA 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PfeI GAWTC 1 cut(s) 154
PleI GAGTC 3 cut(s) 69, 197, 285
PpsI GAGTC 3 cut(s) 69, 197, 285
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspPI GGNCC 1 cut(s) 294
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
Sau96I GGNCC 1 cut(s) 294
SchI GAGTC 3 cut(s) 69, 197, 286
ScrFI CCNGG 1 cut(s) 63
SduI GDGCHC 2 cut(s) 31, 132
SetI ASST 7 cut(s) 64, 175, 214, 247, 326, 347, 361
SfaNI GCATC 1 cut(s) 256
SinI GGWCC 1 cut(s) 294
Sse9I AATT 3 cut(s) 91, 135, 362
SsiI CCGC 2 cut(s) 107, 216
SspI AATATT 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 61
StyI CCWWGG 1 cut(s) 297
TaqI TCGA 4 cut(s) 10, 31, 73, 120
TasI AATT 3 cut(s) 91, 135, 362
TatI WGTACW 1 cut(s) 114
TfiI GAWTC 1 cut(s) 154
TspDTI ATGAA 2 cut(s) 95, 321
VpaK11BI GGWCC 1 cut(s) 294
XapI RAATTY 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.