AT1G01670

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003787
Physical Location & Seq
Reverse (-)
242713 .. 246054
3342 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01670.1

Sequence Viewer

Length: 1098 bp
ATGACCCCTTCATCAAGTGGGCTGGAACAAAGCGAGATCGATGCAATCCAGGAGTTGGAACAGACTAGTAGAAATGATACCCTTCTCAAGTATCATGATATCTGCATAGATGAAGGAGTTATTGAACAAGATGTGGATATGTCATGTTTTTCAGCAAATAGTGTGGGGGAATGGATTGTGGAACTTATCTATCAAAACAATATCAAGAAGCTTATCATGGGAGCAACTGCTGATTCACACTACTCCGAGGGCATGGTTCATATCACACCTACAAAAGCTGACTACGTGATTCAACATGCGCCCCATTGCTGTAACATATGGCTTGTATGTAATGGAAATCTCATCCAAACGAGGGAGGGACGGTTCGAACATGCAGGTTCAGCGTACTCATCCTCAAGCAGCCTTCATAGCATTGATTCTGCTCTGATACCATATGGGGGTGCAGGAAGAGCTGAACGTGTTACCGAGCCACATGCCTTGTCATCATCTGAAGAACAATCAGCTAGAGGGATTGAGAAAATGTATTACGAGGAGCAGAGACGGAGATTGGAAATTGAGGAATTAAAGAGAGAGAAGGAGCAGCGCGATAAGATGAGGCGTGTAAGAGAGGAAGCACTCTCAAGTTCTTCTGGTGTCACTAAGATACTGTACAATGAAGAAGTAATGCGCAGGAGAGAAGTGGAGGCGGAACTAAACAGAGCAAAAGCAGAAATAGAAGATATGAAAAGGGTCCAAATTGAACTTAAAGAACAGCATTATGCTGATTGCCGTCTGTTAGAGAAAGAGCGAGACGAAGCTATCAAGACAACTGAAGAGCTTTTAAGAGCTTTGGAGAAGGGTGAGTCATCAATCCCGTTGCAGTGGTCTGTTTCCATCGAGCCTCCCCAATGTTTCATATGTCCCATTTCAAAGGATATTATGCAAAATCCTCATGTTGCAGCCGATGGTTACACCTATGAAGCAGATGAGTTCAGAAGATGGCTCAATCACGGAGGTGAAAAATCACCAATGACAAATCTTAGGCTCGAGAATCGCAATCTCATCCCGAATCTTGTTCTTCGTTCCGCCATTAAAGACTGGTTGCAACAGCATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
U-box Usp

Protein Analysis

365

Amino Acids

41.86

Weight (kDa)

5.22

Isoelectric Point (pI)

69.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 295 - 364 1.9e-15 U-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 668
Acc36I ACCTGC 1 cut(s) 365
AccB7I CCANNNNNTGG 1 cut(s) 55
AccII CGCG 1 cut(s) 585
AciI CCGC 2 cut(s) 686, 1065
AcuI CTGAAG 2 cut(s) 510, 831
AfaI GTAC 2 cut(s) 386, 650
AfiI CCNNNNNNNGG 3 cut(s) 55, 352, 437
AflIII ACRYGT 1 cut(s) 457
AgsI TTSAA 4 cut(s) 125, 293, 740, 909
AhlI ACTAGT 1 cut(s) 65
AjnI CCWGG 1 cut(s) 48
AleI CACNNNNGTG 1 cut(s) 993
AloI GAACNNNNNNTCC 2 cut(s) 347, 379
AluBI AGCT 7 cut(s) 211, 278, 452, 503, 797, 817, 827
AluI AGCT 7 cut(s) 211, 278, 452, 503, 797, 817, 827
Alw26I GTCTC 2 cut(s) 532, 783
Ama87I CYCGRG 1 cut(s) 1025
ApeKI GCWGC 3 cut(s) 399, 580, 938
AspLEI GCGC 3 cut(s) 301, 585, 669
AspS9I GGNCC 1 cut(s) 730
AsuHPI GGTGA 3 cut(s) 851, 996, 1007
AsuII TTCGAA 1 cut(s) 366
AvaI CYCGRG 1 cut(s) 1025
AvaII GGWCC 1 cut(s) 730
BbvI GCAGC 3 cut(s) 411, 592, 950
BccI CCATC 3 cut(s) 881, 938, 972
BceAI ACGGC 1 cut(s) 753
BcgI CGANNNNNNTGC 4 cut(s) 23, 57, 455, 489
BciT130I CCWGG 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 532, 783
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 2 cut(s) 66, 504
BfuAI ACCTGC 1 cut(s) 365
BisI GCNGC 3 cut(s) 400, 581, 939
BlsI GCNGC 3 cut(s) 401, 582, 940
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 1 cut(s) 730
BmeT110I CYCGRG 1 cut(s) 1025
BmgT120I GGNCC 1 cut(s) 730
BmiI GGNNCC 1 cut(s) 731
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 1 cut(s) 31
Bpu14I TTCGAA 1 cut(s) 366
BpuEI CTTGAG 3 cut(s) 71, 379, 604
Bsa29I ATCGAT 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 286
BsaJI CCNNGG 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 347, 377
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 352, 437
Bse1I ACTGG 1 cut(s) 1082
Bse3DI GCAATG 1 cut(s) 304
BseBI CCWGG 1 cut(s) 50
BseCI ATCGAT 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 4 cut(s) 342, 389, 1041, 1090
BseLI CCNNNNNNNGG 3 cut(s) 55, 352, 437
BseMI GCAATG 1 cut(s) 304
BseNI ACTGG 1 cut(s) 1082
BseRI GAGGAG 1 cut(s) 545
BseXI GCAGC 3 cut(s) 411, 592, 950
BsgI GTGCAG 1 cut(s) 462
Bsh1236I CGCG 1 cut(s) 585
BshVI ATCGAT 1 cut(s) 39
BsiHKCI CYCGRG 1 cut(s) 1025
BslFI GGGAC 2 cut(s) 372, 885
BslI CCNNNNNNNGG 3 cut(s) 55, 352, 437
BsmAI GTCTC 2 cut(s) 532, 783
BsmBI CGTCTC 2 cut(s) 532, 783
BsmFI GGGAC 2 cut(s) 372, 885
BsoBI CYCGRG 1 cut(s) 1025
Bsp119I TTCGAA 1 cut(s) 366
Bsp1407I TGTACA 1 cut(s) 648
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 2 cut(s) 686, 1065
BspDI ATCGAT 1 cut(s) 39
BspFNI CGCG 1 cut(s) 585
BspHI TCATGA 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 731
BspMI ACCTGC 1 cut(s) 365
BspQI GCTCTTC 2 cut(s) 442, 807
BspT104I TTCGAA 1 cut(s) 366
BsrDI GCAATG 1 cut(s) 304
BsrGI TGTACA 1 cut(s) 648
BsrI ACTGG 1 cut(s) 1082
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 363, 648
Bst6I CTCTTC 2 cut(s) 442, 807
BstAUI TGTACA 1 cut(s) 648
BstBAI YACGTR 1 cut(s) 286
BstBI TTCGAA 1 cut(s) 366
BstDEI CTNAG 2 cut(s) 639, 1019
BstF5I GGATG 4 cut(s) 342, 389, 1041, 1090
BstFNI CGCG 1 cut(s) 585
BstHHI GCGC 3 cut(s) 301, 585, 669
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 2 cut(s) 532, 783
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 3 cut(s) 380, 408, 449
BstNI CCWGG 1 cut(s) 50
BstNSI RCATGY 3 cut(s) 299, 374, 476
BstSCI CCNGG 1 cut(s) 48
BstUI CGCG 1 cut(s) 585
BstV1I GCAGC 3 cut(s) 411, 592, 950
Bsu15I ATCGAT 1 cut(s) 39
BsuTUI ATCGAT 1 cut(s) 39
BtsCI GGATG 4 cut(s) 342, 389, 1041, 1090
BtsI GCAGTG 1 cut(s) 866
BtsIMutI CAGTG 1 cut(s) 866
BveI ACCTGC 1 cut(s) 365
CciI TCATGA 1 cut(s) 94
CfoI GCGC 3 cut(s) 301, 585, 669
Cfr13I GGNCC 1 cut(s) 730
ClaI ATCGAT 1 cut(s) 39
Csp6I GTAC 2 cut(s) 385, 649
CspCI CAANNNNNGTGG 4 cut(s) 144, 179, 459, 494
CviAII CATG 8 cut(s) 95, 144, 217, 253, 296, 371, 473, 932
CviQI GTAC 2 cut(s) 385, 649
DdeI CTNAG 2 cut(s) 639, 1019
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eam1104I CTCTTC 2 cut(s) 442, 807
EarI CTCTTC 2 cut(s) 442, 807
EciI GGCGGA 2 cut(s) 701, 1054
Eco32I GATATC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 730
Eco57I CTGAAG 2 cut(s) 510, 831
Eco88I CYCGRG 1 cut(s) 1025
EcoRII CCWGG 1 cut(s) 48
EcoRV GATATC 1 cut(s) 100
Esp3I CGTCTC 2 cut(s) 532, 783
FaeI CATG 8 cut(s) 98, 147, 220, 256, 299, 374, 476, 935
FaqI GGGAC 2 cut(s) 372, 885
FatI CATG 8 cut(s) 94, 143, 216, 252, 295, 370, 472, 931
FauNDI CATATG 3 cut(s) 317, 433, 896
Fnu4HI GCNGC 3 cut(s) 400, 581, 939
FokI GGATG 4 cut(s) 329, 376, 1028, 1077
Fsp4HI GCNGC 3 cut(s) 400, 581, 939
FspBI CTAG 2 cut(s) 66, 504
FspI TGCGCA 1 cut(s) 668
GlaI GCGC 3 cut(s) 300, 584, 668
GluI GCNGC 3 cut(s) 400, 581, 939
HhaI GCGC 3 cut(s) 301, 585, 669
Hin1II CATG 8 cut(s) 98, 147, 220, 256, 299, 374, 476, 935
Hin6I GCGC 3 cut(s) 299, 583, 667
HinP1I GCGC 3 cut(s) 299, 583, 667
HindIII AAGCTT 1 cut(s) 209
HinfI GANTC 6 cut(s) 233, 289, 416, 842, 1030, 1048
HphI GGTGA 3 cut(s) 851, 996, 1007
Hpy188I TCNGA 4 cut(s) 247, 426, 490, 974
Hpy188III TCNNGA 5 cut(s) 95, 205, 802, 1027, 1045
HpyAV CCTTC 6 cut(s) 18, 92, 107, 413, 568, 829
HpyCH4III ACNGT 2 cut(s) 363, 648
HpyCH4IV ACGT 2 cut(s) 285, 457
HpyCH4V TGCA 8 cut(s) 44, 105, 374, 443, 859, 922, 938, 1084
HpyF10VI GCNNNNNNNGC 3 cut(s) 380, 408, 449
HpyF3I CTNAG 2 cut(s) 639, 1019
HpySE526I ACGT 2 cut(s) 285, 457
Hsp92II CATG 8 cut(s) 98, 147, 220, 256, 299, 374, 476, 935
HspAI GCGC 3 cut(s) 299, 583, 667
Kzo9I GATC 1 cut(s) 36
LguI GCTCTTC 2 cut(s) 442, 807
LmnI GCTCC 3 cut(s) 221, 532, 577
LpnPI CCDG 8 cut(s) 8, 35, 62, 360, 429, 615, 655, 1063
Lsp1109I GCAGC 3 cut(s) 411, 592, 950
LweI GCATC 1 cut(s) 31
MaeI CTAG 2 cut(s) 66, 504
MaeII ACGT 2 cut(s) 285, 457
MaeIII GTNAC 4 cut(s) 311, 460, 634, 947
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 8 cut(s) 459, 503, 618, 668, 728, 824, 987, 1049
MluCI AATT 3 cut(s) 552, 560, 735
MlyI GAGTC 1 cut(s) 851
MmeI TCCRAC 1 cut(s) 36
MseI TTAA 4 cut(s) 563, 744, 821, 1071
MslI CAYNNNNRTG 1 cut(s) 993
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
MvnI CGCG 1 cut(s) 585
MwoI GCNNNNNNNGC 3 cut(s) 380, 408, 449
NdeI CATATG 3 cut(s) 317, 433, 896
NdeII GATC 1 cut(s) 36
NlaIII CATG 8 cut(s) 98, 147, 220, 256, 299, 374, 476, 935
NlaIV GGNNCC 1 cut(s) 731
NmuCI GTSAC 1 cut(s) 634
NsbI TGCGCA 1 cut(s) 668
NspI RCATGY 3 cut(s) 299, 374, 476
NspV TTCGAA 1 cut(s) 366
OliI CACNNNNGTG 1 cut(s) 993
PaeR7I CTCGAG 1 cut(s) 1025
PagI TCATGA 1 cut(s) 94
PciSI GCTCTTC 2 cut(s) 442, 807
PfeI GAWTC 5 cut(s) 233, 289, 416, 1030, 1048
PflMI CCANNNNNTGG 1 cut(s) 55
PfoI TCCNGGA 1 cut(s) 48
PkrI GCNGC 3 cut(s) 401, 582, 940
PleI GAGTC 1 cut(s) 850
PpsI GAGTC 1 cut(s) 850
Ppu21I YACGTR 1 cut(s) 286
Psp6I CCWGG 1 cut(s) 48
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 731
PspPI GGNCC 1 cut(s) 730
RsaI GTAC 2 cut(s) 386, 650
RsaNI GTAC 2 cut(s) 385, 649
RseI CAYNNNNRTG 1 cut(s) 993
SapI GCTCTTC 2 cut(s) 442, 807
SaqAI TTAA 4 cut(s) 563, 744, 821, 1071
SatI GCNGC 3 cut(s) 400, 581, 939
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 1 cut(s) 730
SchI GAGTC 1 cut(s) 851
ScrFI CCNGG 1 cut(s) 50
SfaNI GCATC 1 cut(s) 31
Sfr274I CTCGAG 1 cut(s) 1025
SfuI TTCGAA 1 cut(s) 366
SinI GGWCC 1 cut(s) 730
SlaI CTCGAG 1 cut(s) 1025
SmiMI CAYNNNNRTG 1 cut(s) 993
SmlI CTYRAG 4 cut(s) 86, 394, 619, 1025
SmoI CTYRAG 4 cut(s) 86, 394, 619, 1025
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 3 cut(s) 552, 560, 735
SsiI CCGC 2 cut(s) 686, 1065
SspMI CTAG 2 cut(s) 66, 504
StyD4I CCNGG 1 cut(s) 48
TaaI ACNGT 2 cut(s) 363, 648
TaiI ACGT 2 cut(s) 288, 460
TaqI TCGA 4 cut(s) 39, 366, 876, 1026
TasI AATT 3 cut(s) 552, 560, 735
TatI WGTACW 1 cut(s) 648
TfiI GAWTC 5 cut(s) 233, 289, 416, 1030, 1048
Tru1I TTAA 4 cut(s) 563, 744, 821, 1071
Tru9I TTAA 4 cut(s) 563, 744, 821, 1071
TscAI CASTG 1 cut(s) 866
TseFI GTSAC 1 cut(s) 634
TseI GCWGC 3 cut(s) 399, 580, 938
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 7 cut(s) 126, 248, 395, 669, 737, 883, 972
TspGWI ACGGA 2 cut(s) 556, 1005
TspRI CASTG 1 cut(s) 866
Van91I CCANNNNNTGG 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 730
XceI RCATGY 3 cut(s) 299, 374, 476
XhoI CTCGAG 1 cut(s) 1025
XspI CTAG 2 cut(s) 66, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.