Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012949.1

Orthogroup ID

OG0003787

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 707

Gene Structure 707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012949.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ctctctgatctctttgctgtactggataagagggctggtcgatggccaatggatttggcagagaaacttctgaagttgtctaaaacttgtaattcctttaaatctagcgattataaggactcatcgtatatgctcaaagtaagggaagagcttaatgaaattagagaaaatgctgatgatataatcagacagcggtcaaggacatacgaaacgttttgtggtggtgcttatgtagaggattccaacatcccaaatgctttcgtctgcccaatatttaaggaagtaatgaaggatccacatgtggcggctgacggattttcttatgagcgaaaagccatagcgaaatggttgaaattgggaagttataggtctccaatgacaaatttggtgcttgagcataaagttcttaggcccaatcacacccttctgtttctcatccaagattggcaaagtgcaaattcatctccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr U-box

Protein Analysis

156

Amino Acids

17.98

Weight (kDa)

8.42

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01670 AT1G01670 AT1G01670 AT1G01680
fragaria_vesca	FvH4_1g19560 FvH4_1g19563
malus_domestica	MD07G1249800.v1.1
pyrus_communis	pycom01g09160
rosa_chinensis	RchiOBHm_Chr2g0111071 RchiOBHm_Chr2g0111091 RchiOBHm_Chr2g0111101
rosa_laevigata	RLG00000017863 RLG00000017864
rosa_multiflora	Rmu_co8348129.1_g000001 Rmu_sc0012949.1_g000001 Rmu_sc0018570.1_g000001 Rmu_sc0019445.1_g000002 Rmu_sc0036074.1_g000001 Rmu_sc0040262.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132710
rosa_rugosa	Rorug02G0170900
rosa_samantha	Rh2AG223400 Rh2AG223600 Rh2AG223700 Rh2AG223800 Rh2BG235300 Rh2BG235400 Rh2CG226800 Rh2CG226900 Rh2DG231100 Rh2DG231300 Rh2DG231400
rosa_wichuraiana	Rw2G017240 Rw2G017260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	114
AciI	CCGC	2 cut(s)	193, 305
AclI	AACGTT	1 cut(s)	212
AclWI	GGATC	2 cut(s)	287, 300
AcoI	YGGCCR	1 cut(s)	44
AcsI	RAATTY	2 cut(s)	382, 457
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	1 cut(s)	21
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	1 cut(s)	352
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	2 cut(s)	287, 300
AoxI	GGCC	2 cut(s)	44, 410
ApoI	RAATTY	2 cut(s)	382, 457
AspS9I	GGNCC	1 cut(s)	411
BalI	TGGCCA	1 cut(s)	46
BamHI	GGATCC	1 cut(s)	292
BccI	CCATC	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	1 cut(s)	105
BisI	GCNGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	1 cut(s)	294
BoxI	GACNNNNGTC	1 cut(s)	193
BpuEI	CTTGAG	1 cut(s)	413
BsaI	GGTCTC	1 cut(s)	375
Bse1I	ACTGG	1 cut(s)	27
BseGI	GGATG	2 cut(s)	246, 435
BseNI	ACTGG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	46, 412
BsmAI	GTCTC	1 cut(s)	375
BsnI	GGCC	2 cut(s)	46, 412
Bso31I	GGTCTC	1 cut(s)	375
Bsp143I	GATC	2 cut(s)	7, 292
BspACI	CCGC	2 cut(s)	193, 305
BspANI	GGCC	2 cut(s)	46, 412
BspLI	GGNNCC	1 cut(s)	294
BspPI	GGATC	2 cut(s)	287, 300
BspQI	GCTCTTC	1 cut(s)	141
BspTNI	GGTCTC	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	27
BssMI	GATC	2 cut(s)	7, 292
Bst6I	CTCTTC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	407
BstF5I	GGATG	2 cut(s)	246, 435
BstKTI	GATC	2 cut(s)	10, 295
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	2 cut(s)	7, 292
BstNSI	RCATGY	1 cut(s)	302
BstPAI	GACNNNNGTC	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	46, 412
BtsCI	GGATG	2 cut(s)	246, 435
Cfr13I	GGNCC	1 cut(s)	411
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	2 cut(s)	299, 468
CviJI	RGCY	6 cut(s)	35, 46, 151, 308, 335, 412
CviKI_1	RGCY	6 cut(s)	35, 46, 151, 308, 335, 412
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	1 cut(s)	407
DpnI	GATC	2 cut(s)	9, 294
DpnII	GATC	2 cut(s)	7, 292
DraI	TTTAAA	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco31I	GGTCTC	1 cut(s)	375
Eco57I	CTGAAG	1 cut(s)	92
FaeI	CATG	2 cut(s)	302, 471
FatI	CATG	2 cut(s)	298, 467
Fnu4HI	GCNGC	1 cut(s)	306
FokI	GGATG	2 cut(s)	233, 422
Fsp4HI	GCNGC	1 cut(s)	306
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	46, 412
Hin1II	CATG	2 cut(s)	302, 471
HinfI	GANTC	2 cut(s)	119, 239
Hpy188I	TCNGA	3 cut(s)	7, 72, 188
HpyAV	CCTTC	2 cut(s)	283, 434
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	1 cut(s)	455
HpyF3I	CTNAG	1 cut(s)	407
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	2 cut(s)	302, 471
Kzo9I	GATC	2 cut(s)	7, 292
LguI	GCTCTTC	1 cut(s)	141
LpnPI	CCDG	2 cut(s)	8, 21
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	1 cut(s)	212
MalI	GATC	2 cut(s)	9, 294
MboI	GATC	2 cut(s)	7, 292
MboII	GAAGA	1 cut(s)	158
MflI	RGATCY	1 cut(s)	292
MlsI	TGGCCA	1 cut(s)	46
MluCI	AATT	5 cut(s)	91, 159, 353, 382, 457
MluNI	TGGCCA	1 cut(s)	46
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	2 cut(s)	24, 229
Mox20I	TGGCCA	1 cut(s)	46
MscI	TGGCCA	1 cut(s)	46
MseI	TTAA	3 cut(s)	99, 153, 276
MslI	CAYNNNNRTG	1 cut(s)	466
Msp20I	TGGCCA	1 cut(s)	46
MspA1I	CMGCKG	1 cut(s)	193
NdeII	GATC	2 cut(s)	7, 292
NlaIII	CATG	2 cut(s)	302, 471
NlaIV	GGNNCC	1 cut(s)	294
NspI	RCATGY	1 cut(s)	302
PciI	ACATGT	1 cut(s)	298
PciSI	GCTCTTC	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	307
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
PscI	ACATGT	1 cut(s)	298
PshAI	GACNNNNGTC	1 cut(s)	193
PsiI	TTATAA	1 cut(s)	114
Psp1406I	AACGTT	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	411
PsuI	RGATCY	1 cut(s)	292
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	466
SapI	GCTCTTC	1 cut(s)	141
SaqAI	TTAA	3 cut(s)	99, 153, 276
SatI	GCNGC	1 cut(s)	306
Sau3AI	GATC	2 cut(s)	7, 292
Sau96I	GGNCC	1 cut(s)	411
SchI	GAGTC	1 cut(s)	113
SetI	ASST	3 cut(s)	153, 215, 371
SgeI	CNNG	8 cut(s)	35, 48, 99, 117, 210, 311, 404, 452
SmiMI	CAYNNNNRTG	1 cut(s)	466
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	5 cut(s)	91, 159, 353, 382, 457
SsiI	CCGC	2 cut(s)	193, 305
SspI	AATATT	1 cut(s)	273
SspMI	CTAG	1 cut(s)	105
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	40
TasI	AATT	5 cut(s)	91, 159, 353, 382, 457
TatI	WGTACW	1 cut(s)	19
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	3 cut(s)	99, 153, 276
Tru9I	TTAA	3 cut(s)	99, 153, 276
TspDTI	ATGAA	3 cut(s)	171, 302, 450
TspGWI	ACGGA	1 cut(s)	327
XapI	RAATTY	2 cut(s)	382, 457
XceI	RCATGY	1 cut(s)	302
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.