AT1G01680

U-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0003787
Physical Location & Seq
Reverse (-)
246262 .. 248440
2179 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01680.1

Sequence Viewer

Length: 927 bp
ATGGAAGACGCCATATATGTTGCAGTGAATCAAGATGTTCGAGAAAGTAAAAAAACTTTGTTATGGGCTTTGAAAAATCTTCAAGTCAAGAAGATTTTCCTTCTTCATGTTCATCTTCCATTTTCGTTGACCACTTCTTCAAGTAGGCTTGAACAAAGTGAGATCGATGCAATCCAAGATTCAGAACTGAATACTTCAGTAAATAGCCTCTACAAGTACCGTGATATCTGCATAAACAAAGGGGTTAATGAAAAAGATGTGGATACATCAATGATCTCAGGACATGATGTGGGGGAAGGGATTGTGGAACTCATCTATCAAAACATTATCACGAACCTCGTTATGGGAGCAGCAGCTGATCCTCACTATTCCAGGGGAATGTCTATCACATCTAGGAAAGCAGAGTATGTGAGTCAACATGCACCTCATAGCTGTAAAATATGGTTCATCTGCAAGGGGAAACTCATCAAGCAAAGAGAAAGAAGTTTCTACCTCGGGAATCCATCAGACTCATTCTCAGAATTCTCTACTTCTGCTGAGAAACCAATTAGCAAAGGAAGAAGAAGGGATGAGGAAGAGGAACCCGAGTCACCTAAAGAACATCCAGGTTGGATACTAGAACCTGAGGAATCACCAAAGAAAGGAAGGAAGGAAACTATAGAGAAATCAAAAAGCAATGAGAGCGATGAAGACCCACGTCTCGAAGATTTCAAGTGTCCCATTTCAATGGAGATAATGCGAGATCCTCATGTGGCTGCTGATGGTTTCACCTACGAGGCAGAGGAATTCAGAAAGTGGCTAAGGTCAGGAGGTCGAACCTCTCCAAAGACAAACAAGCCGCTTGAGAATCACAATCTCGTTCCAAATCACACTCTTCGTATAATCATAAAAGATTGGCTGGAGAAGAACCCAAATTATAAACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 U-box

Protein Analysis

308

Amino Acids

35.39

Weight (kDa)

6.39

Isoelectric Point (pI)

53.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 235 - 303 8e-17 U-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 918
AciI CCGC 1 cut(s) 839
AclI AACGTT 1 cut(s) 922
AclWI GGATC 2 cut(s) 353, 737
AcsI RAATTY 2 cut(s) 521, 785
AcuI CTGAAG 1 cut(s) 180
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 2 cut(s) 343, 641
AgsI TTSAA 6 cut(s) 73, 83, 141, 152, 712, 726
AjiI CACGTC 1 cut(s) 698
AjnI CCWGG 2 cut(s) 371, 604
AluBI AGCT 2 cut(s) 356, 432
AluI AGCT 2 cut(s) 356, 432
Alw26I GTCTC 1 cut(s) 704
AlwI GGATC 2 cut(s) 353, 737
AlwNI CAGNNNCTG 1 cut(s) 356
Ama87I CYCGRG 2 cut(s) 494, 584
ApeKI GCWGC 3 cut(s) 350, 353, 755
ApoI RAATTY 2 cut(s) 521, 785
Asp700I GAANNNNTTC 1 cut(s) 95
AsuHPI GGTGA 3 cut(s) 582, 624, 760
AvaI CYCGRG 2 cut(s) 494, 584
AxyI CCTNAGG 1 cut(s) 624
BbsI GAAGAC 2 cut(s) 12, 696
BbvI GCAGC 3 cut(s) 362, 365, 742
BccI CCATC 2 cut(s) 511, 755
BciT130I CCWGG 2 cut(s) 373, 606
BciVI GTATCC 2 cut(s) 256, 606
BcoDI GTCTC 1 cut(s) 704
BfaI CTAG 2 cut(s) 393, 617
BfmI CTRYAG 1 cut(s) 657
BfuI GTATCC 2 cut(s) 256, 606
BisI GCNGC 4 cut(s) 351, 354, 756, 839
BlsI GCNGC 4 cut(s) 352, 355, 757, 840
Bme1390I CCNGG 2 cut(s) 373, 606
BmeT110I CYCGRG 2 cut(s) 494, 584
BmgBI CACGTC 1 cut(s) 698
BmiI GGNNCC 1 cut(s) 582
BmrFI CCNGG 2 cut(s) 373, 606
BmsI GCATC 1 cut(s) 157
BoxI GACNNNNGTC 1 cut(s) 696
BpiI GAAGAC 2 cut(s) 12, 696
BpmI CTGGAG 1 cut(s) 920
Bpu10I CCTNAGC 1 cut(s) 800
BpuEI CTTGAG 1 cut(s) 863
Bsa29I ATCGAT 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 372, 493
Bsc4I CCNNNNNNNGG 2 cut(s) 343, 641
Bse21I CCTNAGG 1 cut(s) 624
Bse3DI GCAATG 1 cut(s) 682
BseBI CCWGG 2 cut(s) 373, 606
BseCI ATCGAT 1 cut(s) 165
BseDI CCNNGG 2 cut(s) 372, 493
BseGI GGATG 2 cut(s) 574, 601
BseLI CCNNNNNNNGG 2 cut(s) 343, 641
BseMI GCAATG 1 cut(s) 682
BseMII CTCAG 4 cut(s) 291, 528, 531, 615
BseXI GCAGC 3 cut(s) 362, 365, 742
BshVI ATCGAT 1 cut(s) 165
BsiHKCI CYCGRG 2 cut(s) 494, 584
BslFI GGGAC 1 cut(s) 702
BslI CCNNNNNNNGG 2 cut(s) 343, 641
BsmAI GTCTC 1 cut(s) 704
BsmBI CGTCTC 1 cut(s) 704
BsmFI GGGAC 1 cut(s) 702
BsoBI CYCGRG 2 cut(s) 494, 584
Bsp143I GATC 4 cut(s) 162, 273, 358, 742
BspACI CCGC 1 cut(s) 839
BspCNI CTCAG 4 cut(s) 290, 529, 530, 616
BspDI ATCGAT 1 cut(s) 165
BspLI GGNNCC 1 cut(s) 582
BspPI GGATC 2 cut(s) 353, 737
BsrDI GCAATG 1 cut(s) 682
BssECI CCNNGG 2 cut(s) 372, 493
BssMI GATC 4 cut(s) 162, 273, 358, 742
BssNI GRCGYC 1 cut(s) 9
Bst2UI CCWGG 2 cut(s) 373, 606
Bst4CI ACNGT 1 cut(s) 221
Bst6I CTCTTC 2 cut(s) 570, 879
BstACI GRCGYC 1 cut(s) 9
BstDEI CTNAG 5 cut(s) 277, 517, 537, 624, 800
BstF5I GGATG 2 cut(s) 574, 601
BstKTI GATC 4 cut(s) 165, 276, 361, 745
BstMAI GTCTC 1 cut(s) 704
BstMBI GATC 4 cut(s) 162, 273, 358, 742
BstMWI GCNNNNNNNGC 1 cut(s) 681
BstNI CCWGG 2 cut(s) 373, 606
BstNSI RCATGY 1 cut(s) 422
BstPAI GACNNNNGTC 1 cut(s) 696
BstSCI CCNGG 2 cut(s) 371, 604
BstSFI CTRYAG 1 cut(s) 657
BstV1I GCAGC 3 cut(s) 362, 365, 742
BstV2I GAAGAC 2 cut(s) 12, 696
BstX2I RGATCY 1 cut(s) 742
BstXI CCANNNNNNTGG 1 cut(s) 727
BstYI RGATCY 1 cut(s) 742
Bsu15I ATCGAT 1 cut(s) 165
Bsu36I CCTNAGG 1 cut(s) 624
BsuI GTATCC 2 cut(s) 256, 606
BsuTUI ATCGAT 1 cut(s) 165
BtgZI GCGATG 1 cut(s) 699
BtrI CACGTC 1 cut(s) 698
BtsCI GGATG 2 cut(s) 574, 601
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 30
CaiI CAGNNNCTG 1 cut(s) 356
ClaI ATCGAT 1 cut(s) 165
CseI GACGC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 217
CviAII CATG 4 cut(s) 107, 284, 419, 749
CviJI RGCY 9 cut(s) 68, 148, 207, 356, 432, 755, 799, 838, 898
CviKI_1 RGCY 9 cut(s) 68, 148, 207, 356, 432, 755, 799, 838, 898
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 5 cut(s) 277, 517, 537, 624, 800
DpnI GATC 4 cut(s) 164, 275, 360, 744
DpnII GATC 4 cut(s) 162, 273, 358, 742
Eam1104I CTCTTC 2 cut(s) 570, 879
EarI CTCTTC 2 cut(s) 570, 879
Eco32I GATATC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 180
Eco81I CCTNAGG 1 cut(s) 624
Eco88I CYCGRG 2 cut(s) 494, 584
EcoRI GAATTC 2 cut(s) 521, 785
EcoRII CCWGG 2 cut(s) 371, 604
EcoRV GATATC 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 704
FaeI CATG 4 cut(s) 110, 287, 422, 752
FaqI GGGAC 1 cut(s) 702
FatI CATG 4 cut(s) 106, 283, 418, 748
Fnu4HI GCNGC 4 cut(s) 351, 354, 756, 839
FokI GGATG 2 cut(s) 581, 588
Fsp4HI GCNGC 4 cut(s) 351, 354, 756, 839
FspBI CTAG 2 cut(s) 393, 617
GluI GCNGC 4 cut(s) 351, 354, 756, 839
GsuI CTGGAG 1 cut(s) 920
HgaI GACGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 4 cut(s) 110, 287, 422, 752
HincII GTYRAC 2 cut(s) 129, 416
HindII GTYRAC 2 cut(s) 129, 416
HinfI GANTC 8 cut(s) 28, 179, 412, 499, 509, 587, 629, 847
HphI GGTGA 3 cut(s) 582, 624, 760
Hpy166II GTNNAC 2 cut(s) 129, 416
Hpy188I TCNGA 4 cut(s) 184, 508, 520, 791
Hpy188III TCNNGA 8 cut(s) 32, 41, 88, 279, 331, 496, 701, 807
Hpy8I GTNNAC 2 cut(s) 129, 416
HpyAV CCTTC 5 cut(s) 110, 290, 558, 639, 643
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4IV ACGT 2 cut(s) 697, 922
HpyCH4V TGCA 5 cut(s) 23, 170, 231, 422, 453
HpyF10VI GCNNNNNNNGC 1 cut(s) 681
HpyF3I CTNAG 5 cut(s) 277, 517, 537, 624, 800
HpySE526I ACGT 2 cut(s) 697, 922
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 4 cut(s) 110, 287, 422, 752
Kzo9I GATC 4 cut(s) 162, 273, 358, 742
LmnI GCTCC 1 cut(s) 347
LpnPI CCDG 8 cut(s) 264, 358, 385, 591, 618, 636, 792, 884
Lsp1109I GCAGC 3 cut(s) 362, 365, 742
LweI GCATC 1 cut(s) 157
MaeI CTAG 2 cut(s) 393, 617
MaeII ACGT 2 cut(s) 697, 922
MaeIII GTNAC 1 cut(s) 588
MalI GATC 4 cut(s) 164, 275, 360, 744
MboI GATC 4 cut(s) 162, 273, 358, 742
MflI RGATCY 1 cut(s) 742
MluCI AATT 4 cut(s) 521, 546, 785, 913
MlyI GAGTC 3 cut(s) 421, 503, 596
MmeI TCCRAC 1 cut(s) 590
MroXI GAANNNNTTC 1 cut(s) 95
MseI TTAA 1 cut(s) 246
MslI CAYNNNNRTG 1 cut(s) 725
MspA1I CMGCKG 1 cut(s) 356
MspR9I CCNGG 2 cut(s) 373, 606
MvaI CCWGG 2 cut(s) 373, 606
MwoI GCNNNNNNNGC 1 cut(s) 681
NdeII GATC 4 cut(s) 162, 273, 358, 742
NlaIII CATG 4 cut(s) 110, 287, 422, 752
NlaIV GGNNCC 1 cut(s) 582
NmuCI GTSAC 1 cut(s) 588
NspI RCATGY 1 cut(s) 422
PdmI GAANNNNTTC 1 cut(s) 95
PfeI GAWTC 5 cut(s) 28, 179, 499, 629, 847
PkrI GCNGC 4 cut(s) 352, 355, 757, 840
PleI GAGTC 3 cut(s) 420, 503, 595
PpsI GAGTC 3 cut(s) 420, 503, 595
PshAI GACNNNNGTC 1 cut(s) 696
PsiI TTATAA 1 cut(s) 918
Psp1406I AACGTT 1 cut(s) 922
Psp6I CCWGG 2 cut(s) 371, 604
PspGI CCWGG 2 cut(s) 371, 604
PspN4I GGNNCC 1 cut(s) 582
PstNI CAGNNNCTG 1 cut(s) 356
PsuI RGATCY 1 cut(s) 742
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 725
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 4 cut(s) 351, 354, 756, 839
Sau3AI GATC 4 cut(s) 162, 273, 358, 742
SchI GAGTC 3 cut(s) 421, 503, 596
ScrFI CCNGG 2 cut(s) 373, 606
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 657
SmiMI CAYNNNNRTG 1 cut(s) 725
SmlI CTYRAG 1 cut(s) 842
SmoI CTYRAG 1 cut(s) 842
Sse9I AATT 4 cut(s) 521, 546, 785, 913
SsiI CCGC 1 cut(s) 839
SspMI CTAG 2 cut(s) 393, 617
StyD4I CCNGG 2 cut(s) 371, 604
TaaI ACNGT 1 cut(s) 221
TaiI ACGT 2 cut(s) 700, 925
TaqI TCGA 4 cut(s) 40, 165, 702, 814
TasI AATT 4 cut(s) 521, 546, 785, 913
TauI GCSGC 1 cut(s) 841
TfiI GAWTC 5 cut(s) 28, 179, 499, 629, 847
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TscAI CASTG 1 cut(s) 30
TseFI GTSAC 1 cut(s) 588
TseI GCWGC 3 cut(s) 350, 353, 755
Tsp45I GTSAC 1 cut(s) 588
TspDTI ATGAA 5 cut(s) 95, 101, 264, 436, 702
TspRI CASTG 1 cut(s) 30
XapI RAATTY 2 cut(s) 521, 785
XceI RCATGY 1 cut(s) 422
XmnI GAANNNNTTC 1 cut(s) 95
XspI CTAG 2 cut(s) 393, 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.