Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003787

Physical Location & Seq

Genomic Coordinates Reverse (-)

69703427 .. 69705064

Gene Structure 1638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00132710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCCAGGCTTAAGGAGTACACAGCCGAGGAGATCGTATTAGCTACTGATAATTTTTCTTGGCGTTTGAGATCAGAGTCTGTAGGAATTTGGGGCAGTGTTTATAAAGGCTATGTTGACAATGAAGCAGTTTCCATCAAATTCCTCGCCTCCCCCGAAGAACTTGGTCTTACATCTAGGGTTAAGTCCCTCGGACTAACTAGACACCGTAACCTTCTTTCAATGTTGGGCTTCTGCTCAGAGCTCAACTGCTTTGTCTATGAACATGTAGAGTATAGTCGCGTGCTGCACGAGGTCGTCAAGCAAAACCTTCATTGGCACGATCGCATTCGTATTGCCACTCAAATTTGCTCGGCCTTGTCCTACATTATTGAGAGGGCTAGGTGTGAACGTATTATTCCTGACTATCTCAATGCATCCAACGTTCTTATCGATCAAAATCTTAATGCGAAAATCAATGTTGTGCTGAAAATATGCGACAAGCCGGATTTTGCATGGGATGTAAAGACTTTTGGCTATCTGGTTCTGAATCTCTTAACTGGCATTCCCGGAAATTGTTTTTCTTACTGTTATGTTAGATGGTTTGTTGGTTTGCCCCACGGTTTGGACAAGACGGCAGGTCAATGGCCTATGGATTTGGCTGAGAAATTGATGAATGTGTGCCGGCGTTGTGTAGACTGTAATCCTAGAGATGATTTTAGGAAAAAGTACATTATGGTGATAATAGTGAAAGAGATGAAAGATGTTAAGGAAAAGGCTGATGAAATTGTCAGAGGACGTTCAGGAACAAATGATCTAGTTACCAGTGGTAGAGATCAGGACTCTGATATTCCATCACAATTCTACTGCCCCATATATAAGGAAGTAATGAAGGATCCACATGTGGCTGCTGATGGATTTTCCTATGAGCGAGAAGGCATAGAGAAATGGTTCCAAACCGGGCACGACACATCACCAATGACCAATTTGAAGCTCAAGAATAAAATTCTTACCCCTAATGGTACCCTTAAGCTTCTTATCAAAGACTGGTATCGTGATAGATCAATTCCTTATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr U-box

Protein Analysis

352

Amino Acids

40.64

Weight (kDa)

8.19

Isoelectric Point (pI)

20.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	29 - 152	4.6e-10	Protein tyrosine and serine/threonine kinase
U-box	PF04564	277 - 347	7.4e-17	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01670 AT1G01670 AT1G01670 AT1G01680
fragaria_vesca	FvH4_1g19560 FvH4_1g19563
malus_domestica	MD07G1249800.v1.1
pyrus_communis	pycom01g09160
rosa_chinensis	RchiOBHm_Chr2g0111071 RchiOBHm_Chr2g0111091 RchiOBHm_Chr2g0111101
rosa_laevigata	RLG00000017863 RLG00000017864
rosa_multiflora	Rmu_co8348129.1_g000001 Rmu_sc0012949.1_g000001 Rmu_sc0018570.1_g000001 Rmu_sc0019445.1_g000002 Rmu_sc0036074.1_g000001 Rmu_sc0040262.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132710
rosa_rugosa	Rorug02G0170900
rosa_samantha	Rh2AG223400 Rh2AG223600 Rh2AG223700 Rh2AG223800 Rh2BG235300 Rh2BG235400 Rh2CG226800 Rh2CG226900 Rh2DG231100 Rh2DG231300 Rh2DG231400
rosa_wichuraiana	Rw2G017240 Rw2G017260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
Acc36I	ACCTGC	1 cut(s)	608
Acc65I	GGTACC	1 cut(s)	1001
AccB1I	GGYRCC	1 cut(s)	1001
AccB7I	CCANNNNNTGG	1 cut(s)	604
AccI	GTMKAC	1 cut(s)	675
AccII	CGCG	1 cut(s)	282
AclI	AACGTT	1 cut(s)	423
AclWI	GGATC	2 cut(s)	869, 882
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	87, 140, 345, 984
AfaI	GTAC	3 cut(s)	20, 710, 1003
AfiI	CCNNNNNNNGG	1 cut(s)	604
AflII	CTTAAG	2 cut(s)	11, 1007
AflIII	ACRYGT	2 cut(s)	265, 880
AgsI	TTSAA	2 cut(s)	222, 970
AhdI	GACNNNNNGTC	1 cut(s)	618
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	4 cut(s)	44, 244, 973, 1012
AluI	AGCT	4 cut(s)	44, 244, 973, 1012
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	2 cut(s)	869, 882
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	3 cut(s)	3, 354, 626
ApeKI	GCWGC	2 cut(s)	286, 887
ApoI	RAATTY	4 cut(s)	87, 140, 345, 984
Asp700I	GAANNNNTTC	1 cut(s)	929
Asp718I	GGTACC	1 cut(s)	1001
AsuC2I	CCSGG	2 cut(s)	549, 940
AsuHPI	GGTGA	2 cut(s)	730, 945
BaeGI	GKGCMC	1 cut(s)	945
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	874
BanI	GGYRCC	1 cut(s)	1001
BanII	GRGCYC	1 cut(s)	246
BauI	CACGAG	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	273, 874
BccI	CCATC	4 cut(s)	143, 573, 841, 887
BceAI	ACGGC	1 cut(s)	630
BciT130I	CCWGG	1 cut(s)	7
BcnI	CCSGG	2 cut(s)	549, 940
BfaI	CTAG	5 cut(s)	177, 201, 381, 687, 797
BfmI	CTRYAG	1 cut(s)	81
BfrI	CTTAAG	2 cut(s)	11, 1007
BfuAI	ACCTGC	1 cut(s)	608
BisI	GCNGC	2 cut(s)	287, 888
BlsI	GCNGC	2 cut(s)	288, 889
Bme1390I	CCNGG	3 cut(s)	7, 549, 940
BmeRI	GACNNNNNGTC	1 cut(s)	618
BmiI	GGNNCC	3 cut(s)	876, 932, 1003
BmrFI	CCNGG	3 cut(s)	7, 549, 940
BmsI	GCATC	1 cut(s)	425
BpuEI	CTTGAG	1 cut(s)	959
BpuMI	CCSGG	2 cut(s)	549, 940
Bsa29I	ATCGAT	1 cut(s)	432
BsaBI	GATNNNNATC	1 cut(s)	438
BsaJI	CCNNGG	3 cut(s)	27, 190, 598
Bsc4I	CCNNNNNNNGG	1 cut(s)	604
Bse118I	RCCGGY	1 cut(s)	663
Bse1I	ACTGG	3 cut(s)	544, 804, 1031
Bse8I	GATNNNNATC	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	7
BseCI	ATCGAT	1 cut(s)	432
BseDI	CCNNGG	3 cut(s)	27, 190, 598
BseGI	GGATG	2 cut(s)	416, 505
BseJI	GATNNNNATC	1 cut(s)	438
BseLI	CCNNNNNNNGG	1 cut(s)	604
BseMII	CTCAG	2 cut(s)	252, 633
BseNI	ACTGG	3 cut(s)	544, 804, 1031
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	945
BseXI	GCAGC	2 cut(s)	273, 874
BsgI	GTGCAG	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	282
Bsh1285I	CGRYCG	1 cut(s)	325
BshFI	GGCC	3 cut(s)	5, 356, 628
BshNI	GGYRCC	1 cut(s)	1001
BshVI	ATCGAT	1 cut(s)	432
BsiEI	CGRYCG	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	4 cut(s)	485, 549, 664, 939
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	604
BsmFI	GGGAC	1 cut(s)	172
BsmI	GAATGC	2 cut(s)	327, 543
BsnI	GGCC	3 cut(s)	5, 356, 628
Bsp1286I	GDGCHC	2 cut(s)	246, 945
Bsp143I	GATC	8 cut(s)	33, 71, 322, 433, 793, 814, 874, 1040
BspANI	GGCC	3 cut(s)	5, 356, 628
BspCNI	CTCAG	2 cut(s)	251, 634
BspDI	ATCGAT	1 cut(s)	432
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	3 cut(s)	876, 932, 1003
BspMI	ACCTGC	1 cut(s)	608
BspPI	GGATC	2 cut(s)	869, 882
BspT107I	GGYRCC	1 cut(s)	1001
BspTI	CTTAAG	2 cut(s)	11, 1007
BsrFI	RCCGGY	1 cut(s)	663
BsrI	ACTGG	3 cut(s)	544, 804, 1031
BssAI	RCCGGY	1 cut(s)	663
BssECI	CCNNGG	3 cut(s)	27, 190, 598
BssMI	GATC	8 cut(s)	33, 71, 322, 433, 793, 814, 874, 1040
BssSI	CACGAG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	290
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	4 cut(s)	209, 569, 602, 680
BstAFI	CTTAAG	2 cut(s)	11, 1007
BstC8I	GCNNGC	2 cut(s)	284, 665
BstDEI	CTNAG	2 cut(s)	238, 642
BstDSI	CCRYGG	1 cut(s)	598
BstF5I	GGATG	2 cut(s)	416, 505
BstFNI	CGCG	1 cut(s)	282
BstKTI	GATC	8 cut(s)	36, 74, 325, 436, 796, 817, 877, 1043
BstMBI	GATC	8 cut(s)	33, 71, 322, 433, 793, 814, 874, 1040
BstMCI	CGRYCG	1 cut(s)	325
BstNI	CCWGG	1 cut(s)	7
BstNSI	RCATGY	2 cut(s)	269, 884
BstSCI	CCNGG	3 cut(s)	5, 547, 938
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	945
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	273, 874
BstX2I	RGATCY	1 cut(s)	874
BstYI	RGATCY	1 cut(s)	874
Bsu15I	ATCGAT	1 cut(s)	432
BsuRI	GGCC	3 cut(s)	5, 356, 628
BsuTUI	ATCGAT	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	598
BtsCI	GGATG	2 cut(s)	416, 505
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	103, 811
BveI	ACCTGC	1 cut(s)	608
Cac8I	GCNNGC	2 cut(s)	284, 665
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr10I	RCCGGY	1 cut(s)	663
ClaI	ATCGAT	1 cut(s)	432
Csp6I	GTAC	3 cut(s)	19, 709, 1002
CviAII	CATG	3 cut(s)	266, 495, 881
CviQI	GTAC	3 cut(s)	19, 709, 1002
DdeI	CTNAG	2 cut(s)	238, 642
DpnI	GATC	8 cut(s)	35, 73, 324, 435, 795, 816, 876, 1042
DpnII	GATC	8 cut(s)	33, 71, 322, 433, 793, 814, 874, 1040
DriI	GACNNNNNGTC	1 cut(s)	618
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	618
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	246
Eco53kI	GAGCTC	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	5
EcoT22I	ATGCAT	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	3 cut(s)	269, 498, 884
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	3 cut(s)	265, 494, 880
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	2 cut(s)	287, 888
FokI	GGATG	2 cut(s)	403, 512
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	2 cut(s)	287, 888
FspBI	CTAG	5 cut(s)	177, 201, 381, 687, 797
GluI	GCNGC	2 cut(s)	287, 888
HaeIII	GGCC	3 cut(s)	5, 356, 628
HapII	CCGG	4 cut(s)	485, 549, 664, 939
Hin1II	CATG	3 cut(s)	269, 498, 884
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HindIII	AAGCTT	1 cut(s)	1010
HinfI	GANTC	3 cut(s)	77, 529, 821
HpaII	CCGG	4 cut(s)	485, 549, 664, 939
HphI	GGTGA	2 cut(s)	730, 945
Hpy166II	GTNNAC	4 cut(s)	21, 118, 389, 676
Hpy188I	TCNGA	6 cut(s)	76, 194, 241, 528, 773, 826
Hpy188III	TCNNGA	5 cut(s)	401, 783, 818, 976, 1034
Hpy8I	GTNNAC	4 cut(s)	21, 118, 389, 676
HpyAV	CCTTC	4 cut(s)	224, 320, 865, 908
HpyCH4III	ACNGT	4 cut(s)	209, 569, 602, 680
HpyCH4IV	ACGT	3 cut(s)	391, 423, 778
HpyCH4V	TGCA	3 cut(s)	289, 416, 494
HpyF3I	CTNAG	2 cut(s)	238, 642
HpySE526I	ACGT	3 cut(s)	391, 423, 778
Hsp92II	CATG	3 cut(s)	269, 498, 884
KpnI	GGTACC	1 cut(s)	1005
KroI	GCCGGC	1 cut(s)	663
KroNI	GCCGGC	1 cut(s)	665
Kzo9I	GATC	8 cut(s)	33, 71, 322, 433, 793, 814, 874, 1040
Lsp1109I	GCAGC	2 cut(s)	273, 874
LweI	GCATC	1 cut(s)	425
MaeI	CTAG	5 cut(s)	177, 201, 381, 687, 797
MaeII	ACGT	3 cut(s)	391, 423, 778
MaeIII	GTNAC	2 cut(s)	209, 799
MalI	GATC	8 cut(s)	35, 73, 324, 435, 795, 816, 876, 1042
MboI	GATC	8 cut(s)	33, 71, 322, 433, 793, 814, 874, 1040
MboII	GAAGA	1 cut(s)	170
MflI	RGATCY	1 cut(s)	874
MhlI	GDGCHC	2 cut(s)	246, 945
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	86, 815
MmeI	TCCRAC	1 cut(s)	444
MnlI	CCTC	7 cut(s)	22, 155, 160, 200, 286, 369, 767
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	418
MroNI	GCCGGC	1 cut(s)	663
MroXI	GAANNNNTTC	1 cut(s)	929
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	12, 183, 444, 536, 747, 1008
MslI	CAYNNNNRTG	1 cut(s)	716
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	2 cut(s)	11, 1007
MspI	CCGG	4 cut(s)	485, 549, 664, 939
MspR9I	CCNGG	3 cut(s)	7, 549, 940
Mva1269I	GAATGC	2 cut(s)	327, 543
MvaI	CCWGG	1 cut(s)	7
MvnI	CGCG	1 cut(s)	282
NaeI	GCCGGC	1 cut(s)	665
NciI	CCSGG	2 cut(s)	549, 940
NdeII	GATC	8 cut(s)	33, 71, 322, 433, 793, 814, 874, 1040
NgoMIV	GCCGGC	1 cut(s)	663
NlaIII	CATG	3 cut(s)	269, 498, 884
NlaIV	GGNNCC	3 cut(s)	876, 932, 1003
NmeAIII	GCCGAG	2 cut(s)	52, 332
NsiI	ATGCAT	1 cut(s)	418
NspI	RCATGY	2 cut(s)	269, 884
PciI	ACATGT	2 cut(s)	265, 880
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 429
PctI	GAATGC	2 cut(s)	327, 543
PdiI	GCCGGC	1 cut(s)	665
PdmI	GAANNNNTTC	1 cut(s)	929
PfeI	GAWTC	1 cut(s)	529
PflMI	CCANNNNNTGG	1 cut(s)	604
PfoI	TCCNGGA	1 cut(s)	547
PkrI	GCNGC	2 cut(s)	288, 889
Ple19I	CGATCG	1 cut(s)	325
PleI	GAGTC	2 cut(s)	85, 815
PpsI	GAGTC	2 cut(s)	85, 815
PscI	ACATGT	2 cut(s)	265, 880
PsiI	TTATAA	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	246
Psp1406I	AACGTT	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	3 cut(s)	876, 932, 1003
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	874
PvuI	CGATCG	1 cut(s)	325
RsaI	GTAC	3 cut(s)	20, 710, 1003
RsaNI	GTAC	3 cut(s)	19, 709, 1002
RseI	CAYNNNNRTG	1 cut(s)	716
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	6 cut(s)	12, 183, 444, 536, 747, 1008
SatI	GCNGC	2 cut(s)	287, 888
Sau3AI	GATC	8 cut(s)	33, 71, 322, 433, 793, 814, 874, 1040
SchI	GAGTC	2 cut(s)	86, 815
ScrFI	CCNGG	3 cut(s)	7, 549, 940
SduI	GDGCHC	2 cut(s)	246, 945
SfaNI	GCATC	1 cut(s)	425
SfcI	CTRYAG	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	716
SmlI	CTYRAG	3 cut(s)	11, 974, 1007
SmoI	CTYRAG	3 cut(s)	11, 974, 1007
SspMI	CTAG	5 cut(s)	177, 201, 381, 687, 797
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	3 cut(s)	5, 547, 938
TaaI	ACNGT	4 cut(s)	209, 569, 602, 680
TaiI	ACGT	3 cut(s)	394, 426, 781
TaqI	TCGA	1 cut(s)	432
TatI	WGTACW	2 cut(s)	18, 708
TfiI	GAWTC	1 cut(s)	529
Tru1I	TTAA	6 cut(s)	12, 183, 444, 536, 747, 1008
Tru9I	TTAA	6 cut(s)	12, 183, 444, 536, 747, 1008
TscAI	CASTG	2 cut(s)	103, 811
TseI	GCWGC	2 cut(s)	286, 887
TspDTI	ATGAA	7 cut(s)	138, 276, 302, 668, 752, 777, 884
TspRI	CASTG	2 cut(s)	103, 811
Van91I	CCANNNNNTGG	1 cut(s)	604
Vha464I	CTTAAG	2 cut(s)	11, 1007
XapI	RAATTY	4 cut(s)	87, 140, 345, 984
XceI	RCATGY	2 cut(s)	269, 884
XmiI	GTMKAC	1 cut(s)	675
XmnI	GAANNNNTTC	1 cut(s)	929
XspI	CTAG	5 cut(s)	177, 201, 381, 687, 797
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.