Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003787

Physical Location & Seq

Genomic Coordinates Forward (+)

23431974 .. 23454769

Gene Structure 22796 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG235300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCCAGGCTTAAGGAGTACACGGCCGAGGAGATCGTATTGGCTACTGATAATTTTTCTTGGCGGTTGAGATCAGAGTCTGTAGGAATTTGGGCCACTGTTTATAAAGGCTATGTTGACGATGCAGCAATTTCCATCAAATTCCTCACCTCCCCCGAGGAACGTGTTTTTAACTATATGGTTAAGTCCCTCGGACTAACTAGACACCGTAACCTTCTTTCAATGTTGGGCTTCTGCTCAGAGCTCAACTGCTTTGTCTATGAACATGTAGAGTATAGTCGCGTGCTGCACGAGGTCGTCAAGCAAAACCTTCATTGGCACGATCGCATTCGTATTGCCAGTCAAATTTGCTCGGCCTTGTCCTACATTATTAACAGGGCTAGGTGTGAACATAATATTGTTCCTGACTATCTCAGTGCATCCAACATTCTTATCGATCGCTACCTTAATGCCAAAATCAATGTTGTGCTAAAAATATGCGACCAGCCGGATTTTGCATGGGATGTAAAGACTTTTGGCTATCTGGTTCTGAATCTCTTAACTGGCATTCCCGGAAATTGTTTTTCTTACTGTTATGTTAGATGGTTTGTTGGTTTGCCCCACGGTTTGGACAAGACGGCAGGTCAATGGCCTATGGATTCGGCTGAGAAATTGATGAATGTGTGCCGACGCTGTGTAGACTGTAATCCTAGAGATGATTTTAGGAAAAAGTACATTATGGTGATAATAGTGAAAGAGATGAAAGATGTTAGGGAAAAGGCTGACGAAATTGTCAGAGGACGTGCAGGAACAAATGATCTAGTTACCAGTGGTAGAGATCAGGAATCTGATATTCCAACACAATTCTACTGCCCCATATATAAGGAAGTAATGAAGGATCCACATGTGGCTGCTGATGGATTTTCCTATGAGCGAGAAGGCATAGAGAAATGGCTCCAAACCGGGCACGACACATCACCAATGACCAATTTGAAGCTCAAGAATAAAATTCTTACCCCTAATGGTACCCTTAAGCTTCTGATCAAAGACTGGTATCGTGAAAGATCAATTCCTTATCCAAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr U-box

Protein Analysis

355

Amino Acids

41.16

Weight (kDa)

8.19

Isoelectric Point (pI)

24.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	29 - 161	7.7e-09	Protein tyrosine and serine/threonine kinase
U-box	PF04564	278 - 349	8e-18	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01670 AT1G01670 AT1G01670 AT1G01680
fragaria_vesca	FvH4_1g19560 FvH4_1g19563
malus_domestica	MD07G1249800.v1.1
pyrus_communis	pycom01g09160
rosa_chinensis	RchiOBHm_Chr2g0111071 RchiOBHm_Chr2g0111091 RchiOBHm_Chr2g0111101
rosa_laevigata	RLG00000017863 RLG00000017864
rosa_multiflora	Rmu_co8348129.1_g000001 Rmu_sc0012949.1_g000001 Rmu_sc0018570.1_g000001 Rmu_sc0019445.1_g000002 Rmu_sc0036074.1_g000001 Rmu_sc0040262.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132710
rosa_rugosa	Rorug02G0170900
rosa_samantha	Rh2AG223400 Rh2AG223600 Rh2AG223700 Rh2AG223800 Rh2BG235300 Rh2BG235400 Rh2CG226800 Rh2CG226900 Rh2DG231100 Rh2DG231300 Rh2DG231400
rosa_wichuraiana	Rw2G017240 Rw2G017260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
AasI	GACNNNNNNGTC	1 cut(s)	770
Acc36I	ACCTGC	1 cut(s)	611
Acc65I	GGTACC	1 cut(s)	1004
AccB1I	GGYRCC	1 cut(s)	1004
AccB7I	CCANNNNNTGG	1 cut(s)	607
AccI	GTMKAC	1 cut(s)	678
AccII	CGCG	1 cut(s)	282
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	2 cut(s)	872, 885
AcoI	YGGCCR	2 cut(s)	3, 24
AcsI	RAATTY	4 cut(s)	87, 140, 345, 987
AfaI	GTAC	3 cut(s)	20, 713, 1006
AfiI	CCNNNNNNNGG	1 cut(s)	607
AflII	CTTAAG	2 cut(s)	11, 1010
AflIII	ACRYGT	3 cut(s)	163, 265, 883
AgsI	TTSAA	2 cut(s)	222, 973
AhdI	GACNNNNNGTC	1 cut(s)	621
AjiI	CACGTC	1 cut(s)	782
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	3 cut(s)	244, 976, 1015
AluI	AGCT	3 cut(s)	244, 976, 1015
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	2 cut(s)	872, 885
AlwNI	CAGNNNCTG	1 cut(s)	80
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	5 cut(s)	3, 24, 93, 354, 629
ApeKI	GCWGC	3 cut(s)	125, 286, 890
ApoI	RAATTY	4 cut(s)	87, 140, 345, 987
Asp718I	GGTACC	1 cut(s)	1004
AspS9I	GGNCC	1 cut(s)	93
AsuC2I	CCSGG	2 cut(s)	552, 943
AsuHPI	GGTGA	3 cut(s)	139, 733, 948
AvaI	CYCGRG	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	948
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	877
BanI	GGYRCC	1 cut(s)	1004
BanII	GRGCYC	1 cut(s)	246
BauI	CACGAG	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	3 cut(s)	137, 273, 877
BccI	CCATC	3 cut(s)	143, 576, 890
BceAI	ACGGC	2 cut(s)	39, 633
BciT130I	CCWGG	1 cut(s)	7
BclI	TGATCA	1 cut(s)	1020
BcnI	CCSGG	2 cut(s)	552, 943
BfaI	CTAG	4 cut(s)	201, 381, 690, 800
BfmI	CTRYAG	1 cut(s)	81
BfrI	CTTAAG	2 cut(s)	11, 1010
BfuAI	ACCTGC	1 cut(s)	611
BisI	GCNGC	3 cut(s)	126, 287, 891
BlsI	GCNGC	3 cut(s)	127, 288, 892
Bme1390I	CCNGG	3 cut(s)	7, 552, 943
BmeRI	GACNNNNNGTC	1 cut(s)	621
BmeT110I	CYCGRG	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	782
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	3 cut(s)	879, 935, 1006
BmrFI	CCNGG	3 cut(s)	7, 552, 943
BmsI	GCATC	2 cut(s)	112, 428
BpuEI	CTTGAG	1 cut(s)	962
BpuMI	CCSGG	2 cut(s)	552, 943
Bsa29I	ATCGAT	1 cut(s)	435
BsaJI	CCNNGG	4 cut(s)	27, 156, 190, 601
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse1I	ACTGG	4 cut(s)	339, 547, 807, 1034
BseBI	CCWGG	1 cut(s)	7
BseCI	ATCGAT	1 cut(s)	435
BseDI	CCNNGG	4 cut(s)	27, 156, 190, 601
BseGI	GGATG	2 cut(s)	419, 508
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseMII	CTCAG	3 cut(s)	252, 427, 636
BseNI	ACTGG	4 cut(s)	339, 547, 807, 1034
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	948
BseX3I	CGGCCG	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	137, 273, 877
BsgI	GTGCAG	2 cut(s)	272, 804
Bsh1236I	CGCG	1 cut(s)	282
Bsh1285I	CGRYCG	3 cut(s)	27, 325, 439
BshFI	GGCC	5 cut(s)	5, 26, 95, 356, 631
BshNI	GGYRCC	1 cut(s)	1004
BshVI	ATCGAT	1 cut(s)	435
BsiEI	CGRYCG	3 cut(s)	27, 325, 439
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	3 cut(s)	488, 552, 942
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmFI	GGGAC	1 cut(s)	172
BsmI	GAATGC	2 cut(s)	327, 546
BsnI	GGCC	5 cut(s)	5, 26, 95, 356, 631
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	2 cut(s)	246, 948
Bsp143I	GATC	9 cut(s)	33, 71, 322, 436, 796, 817, 877, 1020, 1043
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	5 cut(s)	5, 26, 95, 356, 631
BspCNI	CTCAG	3 cut(s)	251, 426, 637
BspDI	ATCGAT	1 cut(s)	435
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	3 cut(s)	879, 935, 1006
BspMI	ACCTGC	1 cut(s)	611
BspPI	GGATC	2 cut(s)	872, 885
BspT107I	GGYRCC	1 cut(s)	1004
BspTI	CTTAAG	2 cut(s)	11, 1010
BsrI	ACTGG	4 cut(s)	339, 547, 807, 1034
BssECI	CCNNGG	4 cut(s)	27, 156, 190, 601
BssMI	GATC	9 cut(s)	33, 71, 322, 436, 796, 817, 877, 1020, 1043
BssSI	CACGAG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	290
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	5 cut(s)	100, 209, 572, 605, 683
BstAFI	CTTAAG	2 cut(s)	11, 1010
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	3 cut(s)	238, 413, 645
BstDSI	CCRYGG	1 cut(s)	601
BstF5I	GGATG	2 cut(s)	419, 508
BstFNI	CGCG	1 cut(s)	282
BstKTI	GATC	9 cut(s)	36, 74, 325, 439, 799, 820, 880, 1023, 1046
BstMBI	GATC	9 cut(s)	33, 71, 322, 436, 796, 817, 877, 1020, 1043
BstMCI	CGRYCG	3 cut(s)	27, 325, 439
BstNI	CCWGG	1 cut(s)	7
BstNSI	RCATGY	2 cut(s)	269, 887
BstSCI	CCNGG	3 cut(s)	5, 550, 941
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	948
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	137, 273, 877
BstX2I	RGATCY	1 cut(s)	877
BstYI	RGATCY	1 cut(s)	877
BstZI	CGGCCG	1 cut(s)	24
Bsu15I	ATCGAT	1 cut(s)	435
BsuRI	GGCC	5 cut(s)	5, 26, 95, 356, 631
BsuTUI	ATCGAT	1 cut(s)	435
BtgI	CCRYGG	1 cut(s)	601
BtrI	CACGTC	1 cut(s)	782
BtsCI	GGATG	2 cut(s)	419, 508
BtsIMutI	CAGTG	3 cut(s)	96, 421, 814
BveI	ACCTGC	1 cut(s)	611
Cac8I	GCNNGC	1 cut(s)	284
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	93
ClaI	ATCGAT	1 cut(s)	435
CseI	GACGC	1 cut(s)	678
Csp6I	GTAC	3 cut(s)	19, 712, 1005
CviAII	CATG	3 cut(s)	266, 498, 884
CviQI	GTAC	3 cut(s)	19, 712, 1005
DdeI	CTNAG	3 cut(s)	238, 413, 645
DpnI	GATC	9 cut(s)	35, 73, 324, 438, 798, 819, 879, 1022, 1045
DpnII	GATC	9 cut(s)	33, 71, 322, 436, 796, 817, 877, 1020, 1043
DrdI	GACNNNNNNGTC	1 cut(s)	770
DriI	GACNNNNNGTC	1 cut(s)	621
DseDI	GACNNNNNNGTC	1 cut(s)	770
EaeI	YGGCCR	2 cut(s)	3, 24
EagI	CGGCCG	1 cut(s)	24
Eam1105I	GACNNNNNGTC	1 cut(s)	621
Ecl136II	GAGCTC	1 cut(s)	244
EclXI	CGGCCG	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	246
Eco52I	CGGCCG	1 cut(s)	24
Eco53kI	GAGCTC	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	3 cut(s)	269, 501, 887
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	3 cut(s)	265, 497, 883
FbaI	TGATCA	1 cut(s)	1020
FblI	GTMKAC	1 cut(s)	678
Fnu4HI	GCNGC	3 cut(s)	126, 287, 891
FokI	GGATG	2 cut(s)	406, 515
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	3 cut(s)	126, 287, 891
FspBI	CTAG	4 cut(s)	201, 381, 690, 800
GluI	GCNGC	3 cut(s)	126, 287, 891
HaeIII	GGCC	5 cut(s)	5, 26, 95, 356, 631
HapII	CCGG	3 cut(s)	488, 552, 942
HgaI	GACGC	1 cut(s)	678
Hin1II	CATG	3 cut(s)	269, 501, 887
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HindIII	AAGCTT	1 cut(s)	1013
HinfI	GANTC	4 cut(s)	77, 532, 638, 824
HpaII	CCGG	3 cut(s)	488, 552, 942
HphI	GGTGA	3 cut(s)	139, 733, 948
Hpy166II	GTNNAC	4 cut(s)	21, 118, 389, 679
Hpy188I	TCNGA	7 cut(s)	76, 194, 241, 531, 776, 829, 1020
Hpy188III	TCNNGA	4 cut(s)	404, 821, 979, 1037
Hpy8I	GTNNAC	4 cut(s)	21, 118, 389, 679
Hpy99I	CGWCG	1 cut(s)	672
HpyAV	CCTTC	4 cut(s)	224, 320, 868, 911
HpyCH4III	ACNGT	5 cut(s)	100, 209, 572, 605, 683
HpyCH4IV	ACGT	2 cut(s)	163, 781
HpyCH4V	TGCA	5 cut(s)	125, 289, 419, 497, 785
HpyF3I	CTNAG	3 cut(s)	238, 413, 645
HpySE526I	ACGT	2 cut(s)	163, 781
Hsp92II	CATG	3 cut(s)	269, 501, 887
KpnI	GGTACC	1 cut(s)	1008
Ksp22I	TGATCA	1 cut(s)	1020
Kzo9I	GATC	9 cut(s)	33, 71, 322, 436, 796, 817, 877, 1020, 1043
LmnI	GCTCC	1 cut(s)	939
Lsp1109I	GCAGC	3 cut(s)	137, 273, 877
LweI	GCATC	2 cut(s)	112, 428
MaeI	CTAG	4 cut(s)	201, 381, 690, 800
MaeII	ACGT	2 cut(s)	163, 781
MaeIII	GTNAC	2 cut(s)	209, 802
MalI	GATC	9 cut(s)	35, 73, 324, 438, 798, 819, 879, 1022, 1045
MboI	GATC	9 cut(s)	33, 71, 322, 436, 796, 817, 877, 1020, 1043
MflI	RGATCY	1 cut(s)	877
MhlI	GDGCHC	2 cut(s)	246, 948
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	2 cut(s)	447, 860
MnlI	CCTC	7 cut(s)	22, 151, 155, 160, 200, 286, 770
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	7 cut(s)	12, 171, 183, 372, 447, 539, 1011
MslI	CAYNNNNRTG	1 cut(s)	719
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	2 cut(s)	11, 1010
MspI	CCGG	3 cut(s)	488, 552, 942
MspR9I	CCNGG	3 cut(s)	7, 552, 943
Mva1269I	GAATGC	2 cut(s)	327, 546
MvaI	CCWGG	1 cut(s)	7
MvnI	CGCG	1 cut(s)	282
NciI	CCSGG	2 cut(s)	552, 943
NdeII	GATC	9 cut(s)	33, 71, 322, 436, 796, 817, 877, 1020, 1043
NlaIII	CATG	3 cut(s)	269, 501, 887
NlaIV	GGNNCC	3 cut(s)	879, 935, 1006
NmeAIII	GCCGAG	2 cut(s)	52, 332
NspI	RCATGY	2 cut(s)	269, 887
PciI	ACATGT	2 cut(s)	265, 883
PctI	GAATGC	2 cut(s)	327, 546
PfeI	GAWTC	3 cut(s)	532, 638, 824
PflMI	CCANNNNNTGG	1 cut(s)	607
PfoI	TCCNGGA	1 cut(s)	550
PkrI	GCNGC	3 cut(s)	127, 288, 892
Ple19I	CGATCG	2 cut(s)	325, 439
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PscI	ACATGT	2 cut(s)	265, 883
PsiI	TTATAA	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	3 cut(s)	879, 935, 1006
PspPI	GGNCC	1 cut(s)	93
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	877
PvuI	CGATCG	2 cut(s)	325, 439
RsaI	GTAC	3 cut(s)	20, 713, 1006
RsaNI	GTAC	3 cut(s)	19, 712, 1005
RseI	CAYNNNNRTG	1 cut(s)	719
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	7 cut(s)	12, 171, 183, 372, 447, 539, 1011
SatI	GCNGC	3 cut(s)	126, 287, 891
Sau3AI	GATC	9 cut(s)	33, 71, 322, 436, 796, 817, 877, 1020, 1043
Sau96I	GGNCC	1 cut(s)	93
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	3 cut(s)	7, 552, 943
SduI	GDGCHC	2 cut(s)	246, 948
SfaNI	GCATC	2 cut(s)	112, 428
SfcI	CTRYAG	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	719
SmlI	CTYRAG	3 cut(s)	11, 977, 1010
SmoI	CTYRAG	3 cut(s)	11, 977, 1010
SsiI	CCGC	1 cut(s)	64
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	4 cut(s)	201, 381, 690, 800
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	3 cut(s)	5, 550, 941
TaaI	ACNGT	5 cut(s)	100, 209, 572, 605, 683
TaiI	ACGT	2 cut(s)	166, 784
TaqI	TCGA	1 cut(s)	435
TatI	WGTACW	2 cut(s)	18, 711
TfiI	GAWTC	3 cut(s)	532, 638, 824
Tru1I	TTAA	7 cut(s)	12, 171, 183, 372, 447, 539, 1011
Tru9I	TTAA	7 cut(s)	12, 171, 183, 372, 447, 539, 1011
TscAI	CASTG	3 cut(s)	103, 421, 814
TseI	GCWGC	3 cut(s)	125, 286, 890
TspDTI	ATGAA	5 cut(s)	276, 302, 671, 755, 887
TspRI	CASTG	3 cut(s)	103, 421, 814
Van91I	CCANNNNNTGG	1 cut(s)	607
Vha464I	CTTAAG	2 cut(s)	11, 1010
XapI	RAATTY	4 cut(s)	87, 140, 345, 987
XceI	RCATGY	2 cut(s)	269, 887
XmiI	GTMKAC	1 cut(s)	678
XspI	CTAG	4 cut(s)	201, 381, 690, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.