Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003787

Physical Location & Seq

Genomic Coordinates Forward (+)

22443347 .. 22444639

Gene Structure 1293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017863

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCCACGCTTAAGGAGTACACAGCCGAGGAGATCGTATTGGCTACTGATAATTTTTCTTGGCGTTTGAGATCAGAGTCTGTAGGAATTTGGGGCAGTGTTTATAAAGGCTATGTTGACAATGAAGCAGTTTCCATCAAATTCCTCGCCTCCCCCGAAGAACGTGGTCTTACATCTAGGGTTAAGTCCCTCGGACTAACTAGACACCGTAACCTTGTTTCAATGTTGGGCTTCTGCTCCGAGCTCAAGTGCTTTGTCTATGAACATGTAGAGTATAGTCGCGTGCTGCACGAGGTTGTCAAGCAAAACCTTCATTGGCACGATCGCATTCGTATTGCCAGTCAAATTTGCTCGGCCTTGTCCTACATTATTAACAGGGCTAGGAGTGCACATATTGTTCCTGACTATCTCAGTGCATCCAACATTCTTATCGACTGCTACCTTAATGCCAAAATCAATGTTGTGCTAAAAATATGCGACAAGCCGGATTTTGCATGGGATATAAAGACTTTTGGCTATCTGGTTCTGAATCTCTTAACTGGCATTCCCGGAAATTGTTTTTCTTACTGTTATGTTAGATGGTTTGTTGGTTTGCCCCACGGTTTGGACAAGACGGCAGGTCAATGGCCTATGGATTTGGCTGAGAAATTGATGAATGTGTGCCGACGCTGTGTAGACTGTAATCCTAGAGATGATTTTAGGAAAAAGTACATTATGGTGATAATAGTGAAAGAGATGAAAGATGTTAAGGAAAAGGCTGATGAAATTGTCAGAGGACGTGCAGAAACAAATGATCTAGTTACCAGTGGTAGAGATCAGGACTCTGATATTCCAAAACAATTCTACTGCCCCATATATAAGGAAGTAATGAAGGATCCGCATGTGGCTGCCGATGGATTTTCCTATGAGCGAGAAGGCATAGAGAAATGGTTCCAAACCGGGCACGACACATCACCAATGACCAATTTGAAGCTCAAGAATAAAATTCTTACCCCTAATGGTACCCTTAAGCTTCTGATCAAAGACTGGTATCGTGAAAGATCAATTCCTTGTCCAAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr U-box

Protein Analysis

355

Amino Acids

40.78

Weight (kDa)

8.48

Isoelectric Point (pI)

22.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	29 - 160	2.4e-10	Protein tyrosine and serine/threonine kinase
U-box	PF04564	277 - 348	2.8e-17	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01670 AT1G01670 AT1G01670 AT1G01680
fragaria_vesca	FvH4_1g19560 FvH4_1g19563
malus_domestica	MD07G1249800.v1.1
pyrus_communis	pycom01g09160
rosa_chinensis	RchiOBHm_Chr2g0111071 RchiOBHm_Chr2g0111091 RchiOBHm_Chr2g0111101
rosa_laevigata	RLG00000017863 RLG00000017864
rosa_multiflora	Rmu_co8348129.1_g000001 Rmu_sc0012949.1_g000001 Rmu_sc0018570.1_g000001 Rmu_sc0019445.1_g000002 Rmu_sc0036074.1_g000001 Rmu_sc0040262.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132710
rosa_rugosa	Rorug02G0170900
rosa_samantha	Rh2AG223400 Rh2AG223600 Rh2AG223700 Rh2AG223800 Rh2BG235300 Rh2BG235400 Rh2CG226800 Rh2CG226900 Rh2DG231100 Rh2DG231300 Rh2DG231400
rosa_wichuraiana	Rw2G017240 Rw2G017260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
Acc36I	ACCTGC	1 cut(s)	608
Acc65I	GGTACC	1 cut(s)	1001
AccB1I	GGYRCC	1 cut(s)	1001
AccB7I	CCANNNNNTGG	1 cut(s)	604
AccI	GTMKAC	1 cut(s)	675
AccII	CGCG	1 cut(s)	282
AciI	CCGC	1 cut(s)	878
AclWI	GGATC	2 cut(s)	869, 882
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	87, 140, 345, 984
AfaI	GTAC	3 cut(s)	20, 710, 1003
AfiI	CCNNNNNNNGG	1 cut(s)	604
AflII	CTTAAG	2 cut(s)	11, 1007
AflIII	ACRYGT	1 cut(s)	265
AgsI	TTSAA	2 cut(s)	222, 970
AhdI	GACNNNNNGTC	1 cut(s)	618
AjiI	CACGTC	1 cut(s)	779
AluBI	AGCT	3 cut(s)	244, 973, 1012
AluI	AGCT	3 cut(s)	244, 973, 1012
Alw21I	GWGCWC	2 cut(s)	246, 391
Alw44I	GTGCAC	1 cut(s)	387
AlwI	GGATC	2 cut(s)	869, 882
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	3 cut(s)	3, 354, 626
ApaLI	GTGCAC	1 cut(s)	387
ApeKI	GCWGC	2 cut(s)	286, 887
ApoI	RAATTY	4 cut(s)	87, 140, 345, 984
Asp700I	GAANNNNTTC	1 cut(s)	929
Asp718I	GGTACC	1 cut(s)	1001
AsuC2I	CCSGG	2 cut(s)	549, 940
AsuHPI	GGTGA	2 cut(s)	730, 945
BaeGI	GKGCMC	2 cut(s)	391, 945
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	874
BanI	GGYRCC	1 cut(s)	1001
BanII	GRGCYC	1 cut(s)	246
BauI	CACGAG	1 cut(s)	290
Bbv12I	GWGCWC	2 cut(s)	246, 391
BbvI	GCAGC	2 cut(s)	273, 874
BccI	CCATC	3 cut(s)	143, 573, 887
BceAI	ACGGC	1 cut(s)	630
BclI	TGATCA	1 cut(s)	1017
BcnI	CCSGG	2 cut(s)	549, 940
BfaI	CTAG	5 cut(s)	177, 201, 381, 687, 797
BfmI	CTRYAG	1 cut(s)	81
BfrI	CTTAAG	2 cut(s)	11, 1007
BfuAI	ACCTGC	1 cut(s)	608
BisI	GCNGC	2 cut(s)	287, 888
BlsI	GCNGC	2 cut(s)	288, 889
Bme1390I	CCNGG	2 cut(s)	549, 940
BmeRI	GACNNNNNGTC	1 cut(s)	618
BmgBI	CACGTC	1 cut(s)	779
BmiI	GGNNCC	3 cut(s)	876, 932, 1003
BmrFI	CCNGG	2 cut(s)	549, 940
BmsI	GCATC	1 cut(s)	425
BpuEI	CTTGAG	2 cut(s)	230, 959
BpuMI	CCSGG	2 cut(s)	549, 940
BsaJI	CCNNGG	3 cut(s)	27, 190, 598
Bsc4I	CCNNNNNNNGG	1 cut(s)	604
Bse1I	ACTGG	4 cut(s)	339, 544, 804, 1031
BseDI	CCNNGG	3 cut(s)	27, 190, 598
BseGI	GGATG	1 cut(s)	416
BseLI	CCNNNNNNNGG	1 cut(s)	604
BseMII	CTCAG	2 cut(s)	424, 633
BseNI	ACTGG	4 cut(s)	339, 544, 804, 1031
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	2 cut(s)	391, 945
BseXI	GCAGC	2 cut(s)	273, 874
BsgI	GTGCAG	2 cut(s)	272, 801
Bsh1236I	CGCG	1 cut(s)	282
Bsh1285I	CGRYCG	1 cut(s)	325
BshFI	GGCC	3 cut(s)	5, 356, 628
BshNI	GGYRCC	1 cut(s)	1001
BsiEI	CGRYCG	1 cut(s)	325
BsiHKAI	GWGCWC	2 cut(s)	246, 391
BsiSI	CCGG	3 cut(s)	485, 549, 939
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	604
BsmFI	GGGAC	1 cut(s)	172
BsmI	GAATGC	2 cut(s)	327, 543
BsnI	GGCC	3 cut(s)	5, 356, 628
Bsp1286I	GDGCHC	3 cut(s)	246, 391, 945
Bsp143I	GATC	8 cut(s)	33, 71, 322, 793, 814, 874, 1017, 1040
BspACI	CCGC	1 cut(s)	878
BspANI	GGCC	3 cut(s)	5, 356, 628
BspCNI	CTCAG	2 cut(s)	423, 634
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	3 cut(s)	876, 932, 1003
BspMI	ACCTGC	1 cut(s)	608
BspPI	GGATC	2 cut(s)	869, 882
BspT107I	GGYRCC	1 cut(s)	1001
BspTI	CTTAAG	2 cut(s)	11, 1007
BsrI	ACTGG	4 cut(s)	339, 544, 804, 1031
BssECI	CCNNGG	3 cut(s)	27, 190, 598
BssMI	GATC	8 cut(s)	33, 71, 322, 793, 814, 874, 1017, 1040
BssSI	CACGAG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	290
Bst4CI	ACNGT	4 cut(s)	209, 569, 602, 680
BstAFI	CTTAAG	2 cut(s)	11, 1007
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	2 cut(s)	410, 642
BstDSI	CCRYGG	1 cut(s)	598
BstF5I	GGATG	1 cut(s)	416
BstFNI	CGCG	1 cut(s)	282
BstKTI	GATC	8 cut(s)	36, 74, 325, 796, 817, 877, 1020, 1043
BstMBI	GATC	8 cut(s)	33, 71, 322, 793, 814, 874, 1017, 1040
BstMCI	CGRYCG	1 cut(s)	325
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNSI	RCATGY	2 cut(s)	269, 884
BstSCI	CCNGG	2 cut(s)	547, 938
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	2 cut(s)	391, 945
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	273, 874
BstX2I	RGATCY	1 cut(s)	874
BstYI	RGATCY	1 cut(s)	874
BsuRI	GGCC	3 cut(s)	5, 356, 628
BtgI	CCRYGG	1 cut(s)	598
BtrI	CACGTC	1 cut(s)	779
BtsCI	GGATG	1 cut(s)	416
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	3 cut(s)	103, 418, 811
BveI	ACCTGC	1 cut(s)	608
Cac8I	GCNNGC	1 cut(s)	284
CaiI	CAGNNNCTG	1 cut(s)	80
CseI	GACGC	1 cut(s)	675
Csp6I	GTAC	3 cut(s)	19, 709, 1002
CviAII	CATG	3 cut(s)	266, 495, 881
CviQI	GTAC	3 cut(s)	19, 709, 1002
DdeI	CTNAG	2 cut(s)	410, 642
DpnI	GATC	8 cut(s)	35, 73, 324, 795, 816, 876, 1019, 1042
DpnII	GATC	8 cut(s)	33, 71, 322, 793, 814, 874, 1017, 1040
DriI	GACNNNNNGTC	1 cut(s)	618
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	618
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	246
Eco53kI	GAGCTC	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	3 cut(s)	269, 498, 884
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	3 cut(s)	265, 494, 880
FbaI	TGATCA	1 cut(s)	1017
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	2 cut(s)	287, 888
FokI	GGATG	1 cut(s)	403
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	2 cut(s)	287, 888
FspBI	CTAG	5 cut(s)	177, 201, 381, 687, 797
GluI	GCNGC	2 cut(s)	287, 888
HaeIII	GGCC	3 cut(s)	5, 356, 628
HapII	CCGG	3 cut(s)	485, 549, 939
HgaI	GACGC	1 cut(s)	675
Hin1II	CATG	3 cut(s)	269, 498, 884
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HindIII	AAGCTT	1 cut(s)	1010
HinfI	GANTC	3 cut(s)	77, 529, 821
HpaII	CCGG	3 cut(s)	485, 549, 939
HphI	GGTGA	2 cut(s)	730, 945
Hpy166II	GTNNAC	4 cut(s)	21, 118, 389, 676
Hpy188I	TCNGA	7 cut(s)	76, 194, 241, 528, 773, 826, 1017
Hpy188III	TCNNGA	4 cut(s)	401, 818, 976, 1034
Hpy8I	GTNNAC	4 cut(s)	21, 118, 389, 676
Hpy99I	CGWCG	1 cut(s)	669
HpyAV	CCTTC	3 cut(s)	320, 865, 908
HpyCH4III	ACNGT	4 cut(s)	209, 569, 602, 680
HpyCH4IV	ACGT	2 cut(s)	163, 778
HpyCH4V	TGCA	5 cut(s)	289, 389, 416, 494, 782
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	2 cut(s)	410, 642
HpySE526I	ACGT	2 cut(s)	163, 778
Hsp92II	CATG	3 cut(s)	269, 498, 884
KpnI	GGTACC	1 cut(s)	1005
Ksp22I	TGATCA	1 cut(s)	1017
Kzo9I	GATC	8 cut(s)	33, 71, 322, 793, 814, 874, 1017, 1040
LmnI	GCTCC	1 cut(s)	242
Lsp1109I	GCAGC	2 cut(s)	273, 874
LweI	GCATC	1 cut(s)	425
MaeI	CTAG	5 cut(s)	177, 201, 381, 687, 797
MaeII	ACGT	2 cut(s)	163, 778
MaeIII	GTNAC	2 cut(s)	209, 799
MalI	GATC	8 cut(s)	35, 73, 324, 795, 816, 876, 1019, 1042
MboI	GATC	8 cut(s)	33, 71, 322, 793, 814, 874, 1017, 1040
MboII	GAAGA	1 cut(s)	170
MflI	RGATCY	1 cut(s)	874
MhlI	GDGCHC	3 cut(s)	246, 391, 945
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	86, 815
MmeI	TCCRAC	1 cut(s)	444
MnlI	CCTC	6 cut(s)	22, 155, 160, 200, 286, 767
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	929
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	7 cut(s)	12, 183, 372, 444, 536, 747, 1008
MslI	CAYNNNNRTG	1 cut(s)	716
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	2 cut(s)	11, 1007
MspI	CCGG	3 cut(s)	485, 549, 939
MspR9I	CCNGG	2 cut(s)	549, 940
Mva1269I	GAATGC	2 cut(s)	327, 543
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	386
NciI	CCSGG	2 cut(s)	549, 940
NdeII	GATC	8 cut(s)	33, 71, 322, 793, 814, 874, 1017, 1040
NlaIII	CATG	3 cut(s)	269, 498, 884
NlaIV	GGNNCC	3 cut(s)	876, 932, 1003
NmeAIII	GCCGAG	2 cut(s)	52, 332
NspI	RCATGY	2 cut(s)	269, 884
PciI	ACATGT	1 cut(s)	265
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PctI	GAATGC	2 cut(s)	327, 543
PdmI	GAANNNNTTC	1 cut(s)	929
PfeI	GAWTC	1 cut(s)	529
PflMI	CCANNNNNTGG	1 cut(s)	604
PfoI	TCCNGGA	1 cut(s)	547
PkrI	GCNGC	2 cut(s)	288, 889
Ple19I	CGATCG	1 cut(s)	325
PleI	GAGTC	2 cut(s)	85, 815
PpsI	GAGTC	2 cut(s)	85, 815
PscI	ACATGT	1 cut(s)	265
PsiI	TTATAA	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	246
PspN4I	GGNNCC	3 cut(s)	876, 932, 1003
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	874
PvuI	CGATCG	1 cut(s)	325
RsaI	GTAC	3 cut(s)	20, 710, 1003
RsaNI	GTAC	3 cut(s)	19, 709, 1002
RseI	CAYNNNNRTG	1 cut(s)	716
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	7 cut(s)	12, 183, 372, 444, 536, 747, 1008
SatI	GCNGC	2 cut(s)	287, 888
Sau3AI	GATC	8 cut(s)	33, 71, 322, 793, 814, 874, 1017, 1040
SchI	GAGTC	2 cut(s)	86, 815
ScrFI	CCNGG	2 cut(s)	549, 940
SduI	GDGCHC	3 cut(s)	246, 391, 945
SfaNI	GCATC	1 cut(s)	425
SfcI	CTRYAG	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	716
SmlI	CTYRAG	4 cut(s)	11, 245, 974, 1007
SmoI	CTYRAG	4 cut(s)	11, 245, 974, 1007
SsiI	CCGC	1 cut(s)	878
SspMI	CTAG	5 cut(s)	177, 201, 381, 687, 797
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	2 cut(s)	547, 938
TaaI	ACNGT	4 cut(s)	209, 569, 602, 680
TaiI	ACGT	2 cut(s)	166, 781
TaqI	TCGA	1 cut(s)	432
TatI	WGTACW	2 cut(s)	18, 708
TfiI	GAWTC	1 cut(s)	529
Tru1I	TTAA	7 cut(s)	12, 183, 372, 444, 536, 747, 1008
Tru9I	TTAA	7 cut(s)	12, 183, 372, 444, 536, 747, 1008
TscAI	CASTG	3 cut(s)	103, 418, 811
TseI	GCWGC	2 cut(s)	286, 887
TspDTI	ATGAA	7 cut(s)	138, 276, 302, 668, 752, 777, 884
TspRI	CASTG	3 cut(s)	103, 418, 811
Van91I	CCANNNNNTGG	1 cut(s)	604
Vha464I	CTTAAG	2 cut(s)	11, 1007
VneI	GTGCAC	1 cut(s)	387
XapI	RAATTY	4 cut(s)	87, 140, 345, 984
XceI	RCATGY	2 cut(s)	269, 884
XmiI	GTMKAC	1 cut(s)	675
XmnI	GAANNNNTTC	1 cut(s)	929
XspI	CTAG	5 cut(s)	177, 201, 381, 687, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.