Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003787

Physical Location & Seq

Genomic Coordinates Forward (+)

23625787 .. 23627114

Gene Structure 1328 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG223400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCCAGGCTTAAGGAGTACACGGCCGAGGAGATCGTATTGGCTACTGATAATTTTTCTTGGCGGTTGAGATCAGAGTCTGTAGGAATTTGGGGCACTGTTTATAAAGGCTATGTTGACGATGCAGCAATTTCCATCAAATTCCTCACCTCCCCCGAGGAACGTGTTTTTAACTATATGGTTAAGTCCCTCGGACTAATTAGACAGCCTCACCTTCTTTCAATGTTGGGCTTCTGCTCCGAGCTCAAGTGCTTTGTCTATGAACATATAGAGTATAGTCGCGTGCTGCACGAGGTCGTCAAGCAAAACCTTCATTGGCACGATCGCATTCGTATTTCCAGTGATATTTGTTCGGCCTTGTCCTACATTATTAAGAGGGCTAGGTGTGAACCTATTGTTCCTGACTATCTCAATGCATCCAACATTCTTGTCGATCGCCACCTTAATGCCAAAATCAATGTTGTGCTGAAAAGATGCGACAAGCCTGATCTTGCATGGGATGTAAAGACTTTTGGCTATCTGGTTCTGAATCTCTTAACTGGCATTCCCGGAAATTGTTTTTCTTACTGTTATGTTAGATGGTTTGTTGGTTTGCCCCACGGTTTGGACAAGACGGCAGGTCAATGGCCTGTGGATTTGGCTGAGAAATTGATGAATGTGTGCCGACGTTGTGTAGACTGTAATCCTAGAGATGATTTTAGGAAAAAGTACATTATGGTGATAATAGTGAAAAAGATGAACGATATTAGAGAAAAGGCTGATGAAATGGTCAGAGGACGTGCAGGAACATATGATCTAGTTACCAGTGGTAGAGATCAGGACTCTGATATTCCAACACAATTCTACTGCCCCATATATAAGGAAGTAATGATGGATCCACATGTGGCTGCCGATGGATTTTCCTATGAGCGAGAAGGCATAGAGAAATGGTTGCAAACCGGGCACGATACATCACCGATGACCAATTTGAAGCTCAATAGTAAAATTCTTACCCCTAATCGTACCCTTAAGATTCTTATCGAAGACTGGTATCGTGAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr U-box

Protein Analysis

347

Amino Acids

40.34

Weight (kDa)

8.2

Isoelectric Point (pI)

30.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	29 - 152	2.3e-07	Protein tyrosine and serine/threonine kinase
U-box	PF04564	277 - 346	8.5e-18	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01670 AT1G01670 AT1G01670 AT1G01680
fragaria_vesca	FvH4_1g19560 FvH4_1g19563
malus_domestica	MD07G1249800.v1.1
pyrus_communis	pycom01g09160
rosa_chinensis	RchiOBHm_Chr2g0111071 RchiOBHm_Chr2g0111091 RchiOBHm_Chr2g0111101
rosa_laevigata	RLG00000017863 RLG00000017864
rosa_multiflora	Rmu_co8348129.1_g000001 Rmu_sc0012949.1_g000001 Rmu_sc0018570.1_g000001 Rmu_sc0019445.1_g000002 Rmu_sc0036074.1_g000001 Rmu_sc0040262.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132710
rosa_rugosa	Rorug02G0170900
rosa_samantha	Rh2AG223400 Rh2AG223600 Rh2AG223700 Rh2AG223800 Rh2BG235300 Rh2BG235400 Rh2CG226800 Rh2CG226900 Rh2DG231100 Rh2DG231300 Rh2DG231400
rosa_wichuraiana	Rw2G017240 Rw2G017260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
Acc36I	ACCTGC	1 cut(s)	608
AccB7I	CCANNNNNTGG	1 cut(s)	604
AccI	GTMKAC	1 cut(s)	675
AccII	CGCG	1 cut(s)	282
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	2 cut(s)	869, 882
AcoI	YGGCCR	2 cut(s)	3, 24
AcsI	RAATTY	3 cut(s)	87, 140, 984
AfaI	GTAC	3 cut(s)	20, 710, 1003
AfiI	CCNNNNNNNGG	1 cut(s)	604
AflII	CTTAAG	2 cut(s)	11, 1007
AflIII	ACRYGT	2 cut(s)	163, 880
AgsI	TTSAA	2 cut(s)	222, 970
AhdI	GACNNNNNGTC	1 cut(s)	618
AjiI	CACGTC	1 cut(s)	779
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	2 cut(s)	244, 973
AluI	AGCT	2 cut(s)	244, 973
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	2 cut(s)	869, 882
AlwNI	CAGNNNCTG	1 cut(s)	80
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	4 cut(s)	3, 24, 354, 626
ApeKI	GCWGC	3 cut(s)	125, 286, 887
ApoI	RAATTY	3 cut(s)	87, 140, 984
AsuC2I	CCSGG	2 cut(s)	549, 940
AsuHPI	GGTGA	4 cut(s)	139, 203, 730, 945
AvaI	CYCGRG	1 cut(s)	155
BaeGI	GKGCMC	2 cut(s)	98, 945
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	874
BanII	GRGCYC	1 cut(s)	246
BauI	CACGAG	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	1029
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	3 cut(s)	137, 273, 874
BccI	CCATC	4 cut(s)	143, 573, 865, 887
BceAI	ACGGC	2 cut(s)	39, 630
BciT130I	CCWGG	1 cut(s)	7
BcnI	CCSGG	2 cut(s)	549, 940
BfaI	CTAG	3 cut(s)	381, 687, 797
BfmI	CTRYAG	1 cut(s)	81
BfrI	CTTAAG	2 cut(s)	11, 1007
BfuAI	ACCTGC	1 cut(s)	608
BisI	GCNGC	3 cut(s)	126, 287, 888
BlsI	GCNGC	3 cut(s)	127, 288, 889
Bme1390I	CCNGG	3 cut(s)	7, 549, 940
BmeRI	GACNNNNNGTC	1 cut(s)	618
BmeT110I	CYCGRG	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	779
BmiI	GGNNCC	1 cut(s)	876
BmrFI	CCNGG	3 cut(s)	7, 549, 940
BmsI	GCATC	3 cut(s)	112, 425, 464
BpiI	GAAGAC	1 cut(s)	1029
BpuEI	CTTGAG	1 cut(s)	230
BpuMI	CCSGG	2 cut(s)	549, 940
BsaBI	GATNNNNATC	1 cut(s)	1016
BsaJI	CCNNGG	4 cut(s)	27, 156, 190, 598
Bsc4I	CCNNNNNNNGG	1 cut(s)	604
Bse1I	ACTGG	4 cut(s)	339, 544, 804, 1031
Bse8I	GATNNNNATC	1 cut(s)	1016
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	4 cut(s)	27, 156, 190, 598
BseGI	GGATG	2 cut(s)	416, 505
BseJI	GATNNNNATC	1 cut(s)	1016
BseLI	CCNNNNNNNGG	1 cut(s)	604
BseMII	CTCAG	1 cut(s)	633
BseNI	ACTGG	4 cut(s)	339, 544, 804, 1031
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	2 cut(s)	98, 945
BseX3I	CGGCCG	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	137, 273, 874
BsgI	GTGCAG	2 cut(s)	272, 801
Bsh1236I	CGCG	1 cut(s)	282
Bsh1285I	CGRYCG	3 cut(s)	27, 325, 436
BshFI	GGCC	4 cut(s)	5, 26, 356, 628
BsiEI	CGRYCG	3 cut(s)	27, 325, 436
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	549, 939
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	604
BsmFI	GGGAC	1 cut(s)	172
BsmI	GAATGC	2 cut(s)	327, 543
BsnI	GGCC	4 cut(s)	5, 26, 356, 628
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	3 cut(s)	98, 246, 945
Bsp143I	GATC	8 cut(s)	33, 71, 322, 433, 487, 793, 814, 874
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	4 cut(s)	5, 26, 356, 628
BspCNI	CTCAG	1 cut(s)	634
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	876
BspMI	ACCTGC	1 cut(s)	608
BspPI	GGATC	2 cut(s)	869, 882
BspTI	CTTAAG	2 cut(s)	11, 1007
BsrI	ACTGG	4 cut(s)	339, 544, 804, 1031
BssECI	CCNNGG	4 cut(s)	27, 156, 190, 598
BssMI	GATC	8 cut(s)	33, 71, 322, 433, 487, 793, 814, 874
BssSI	CACGAG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	290
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	4 cut(s)	100, 569, 602, 680
BstAFI	CTTAAG	2 cut(s)	11, 1007
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	1 cut(s)	642
BstDSI	CCRYGG	1 cut(s)	598
BstF5I	GGATG	2 cut(s)	416, 505
BstFNI	CGCG	1 cut(s)	282
BstKTI	GATC	8 cut(s)	36, 74, 325, 436, 490, 796, 817, 877
BstMBI	GATC	8 cut(s)	33, 71, 322, 433, 487, 793, 814, 874
BstMCI	CGRYCG	3 cut(s)	27, 325, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	940
BstNI	CCWGG	1 cut(s)	7
BstNSI	RCATGY	1 cut(s)	884
BstSCI	CCNGG	3 cut(s)	5, 547, 938
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	2 cut(s)	98, 945
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	137, 273, 874
BstV2I	GAAGAC	1 cut(s)	1029
BstX2I	RGATCY	1 cut(s)	874
BstYI	RGATCY	1 cut(s)	874
BstZI	CGGCCG	1 cut(s)	24
BsuRI	GGCC	4 cut(s)	5, 26, 356, 628
BtgI	CCRYGG	1 cut(s)	598
BtrI	CACGTC	1 cut(s)	779
BtsCI	GGATG	2 cut(s)	416, 505
BtsIMutI	CAGTG	3 cut(s)	96, 346, 811
BveI	ACCTGC	1 cut(s)	608
Cac8I	GCNNGC	1 cut(s)	284
CaiI	CAGNNNCTG	1 cut(s)	80
Csp6I	GTAC	3 cut(s)	19, 709, 1002
CviAII	CATG	2 cut(s)	495, 881
CviQI	GTAC	3 cut(s)	19, 709, 1002
DdeI	CTNAG	1 cut(s)	642
DpnI	GATC	8 cut(s)	35, 73, 324, 435, 489, 795, 816, 876
DpnII	GATC	8 cut(s)	33, 71, 322, 433, 487, 793, 814, 874
DriI	GACNNNNNGTC	1 cut(s)	618
EaeI	YGGCCR	2 cut(s)	3, 24
EagI	CGGCCG	1 cut(s)	24
Eam1105I	GACNNNNNGTC	1 cut(s)	618
Ecl136II	GAGCTC	1 cut(s)	244
EclXI	CGGCCG	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	246
Eco52I	CGGCCG	1 cut(s)	24
Eco53kI	GAGCTC	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	5
EcoT22I	ATGCAT	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	2 cut(s)	498, 884
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	2 cut(s)	494, 880
FauNDI	CATATG	1 cut(s)	790
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	3 cut(s)	126, 287, 888
FokI	GGATG	2 cut(s)	403, 512
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	3 cut(s)	126, 287, 888
FspBI	CTAG	3 cut(s)	381, 687, 797
GluI	GCNGC	3 cut(s)	126, 287, 888
HaeIII	GGCC	4 cut(s)	5, 26, 356, 628
HapII	CCGG	2 cut(s)	549, 939
Hin1II	CATG	2 cut(s)	498, 884
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	4 cut(s)	77, 529, 821, 1012
HpaII	CCGG	2 cut(s)	549, 939
HphI	GGTGA	4 cut(s)	139, 203, 730, 945
Hpy166II	GTNNAC	4 cut(s)	21, 118, 389, 676
Hpy188I	TCNGA	6 cut(s)	76, 194, 241, 528, 773, 826
Hpy188III	TCNNGA	3 cut(s)	401, 818, 1034
Hpy8I	GTNNAC	4 cut(s)	21, 118, 389, 676
Hpy99I	CGWCG	1 cut(s)	669
HpyAV	CCTTC	3 cut(s)	224, 320, 908
HpyCH4III	ACNGT	4 cut(s)	100, 569, 602, 680
HpyCH4IV	ACGT	3 cut(s)	163, 667, 778
HpyCH4V	TGCA	6 cut(s)	125, 289, 416, 494, 782, 934
HpyF10VI	GCNNNNNNNGC	1 cut(s)	940
HpyF3I	CTNAG	1 cut(s)	642
HpySE526I	ACGT	3 cut(s)	163, 667, 778
Hsp92II	CATG	2 cut(s)	498, 884
Kzo9I	GATC	8 cut(s)	33, 71, 322, 433, 487, 793, 814, 874
LmnI	GCTCC	1 cut(s)	242
Lsp1109I	GCAGC	3 cut(s)	137, 273, 874
LweI	GCATC	3 cut(s)	112, 425, 464
MaeI	CTAG	3 cut(s)	381, 687, 797
MaeII	ACGT	3 cut(s)	163, 667, 778
MaeIII	GTNAC	1 cut(s)	799
MalI	GATC	8 cut(s)	35, 73, 324, 435, 489, 795, 816, 876
MboI	GATC	8 cut(s)	33, 71, 322, 433, 487, 793, 814, 874
MboII	GAAGA	1 cut(s)	1034
MflI	RGATCY	1 cut(s)	874
MhlI	GDGCHC	3 cut(s)	98, 246, 945
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	86, 815
MmeI	TCCRAC	2 cut(s)	444, 857
MnlI	CCTC	9 cut(s)	22, 151, 155, 160, 200, 219, 286, 369, 767
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	418
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	7 cut(s)	12, 171, 183, 372, 444, 536, 1008
MslI	CAYNNNNRTG	2 cut(s)	444, 716
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	2 cut(s)	11, 1007
MspI	CCGG	2 cut(s)	549, 939
MspR9I	CCNGG	3 cut(s)	7, 549, 940
Mva1269I	GAATGC	2 cut(s)	327, 543
MvaI	CCWGG	1 cut(s)	7
MvnI	CGCG	1 cut(s)	282
MwoI	GCNNNNNNNGC	1 cut(s)	940
NciI	CCSGG	2 cut(s)	549, 940
NdeI	CATATG	1 cut(s)	790
NdeII	GATC	8 cut(s)	33, 71, 322, 433, 487, 793, 814, 874
NlaIII	CATG	2 cut(s)	498, 884
NlaIV	GGNNCC	1 cut(s)	876
NmeAIII	GCCGAG	1 cut(s)	52
NsiI	ATGCAT	1 cut(s)	418
NspI	RCATGY	1 cut(s)	884
PciI	ACATGT	1 cut(s)	880
PctI	GAATGC	2 cut(s)	327, 543
PfeI	GAWTC	2 cut(s)	529, 1012
PflMI	CCANNNNNTGG	1 cut(s)	604
PfoI	TCCNGGA	1 cut(s)	547
PkrI	GCNGC	3 cut(s)	127, 288, 889
Ple19I	CGATCG	2 cut(s)	325, 436
PleI	GAGTC	2 cut(s)	85, 815
PpsI	GAGTC	2 cut(s)	85, 815
PscI	ACATGT	1 cut(s)	880
PsiI	TTATAA	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	1 cut(s)	876
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	874
PvuI	CGATCG	2 cut(s)	325, 436
RsaI	GTAC	3 cut(s)	20, 710, 1003
RsaNI	GTAC	3 cut(s)	19, 709, 1002
RseI	CAYNNNNRTG	2 cut(s)	444, 716
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	7 cut(s)	12, 171, 183, 372, 444, 536, 1008
SatI	GCNGC	3 cut(s)	126, 287, 888
Sau3AI	GATC	8 cut(s)	33, 71, 322, 433, 487, 793, 814, 874
SchI	GAGTC	2 cut(s)	86, 815
ScrFI	CCNGG	3 cut(s)	7, 549, 940
SduI	GDGCHC	3 cut(s)	98, 246, 945
SfaNI	GCATC	3 cut(s)	112, 425, 464
SfcI	CTRYAG	1 cut(s)	81
SmiMI	CAYNNNNRTG	2 cut(s)	444, 716
SmlI	CTYRAG	3 cut(s)	11, 245, 1007
SmoI	CTYRAG	3 cut(s)	11, 245, 1007
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	3 cut(s)	381, 687, 797
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	3 cut(s)	5, 547, 938
TaaI	ACNGT	4 cut(s)	100, 569, 602, 680
TaiI	ACGT	3 cut(s)	166, 670, 781
TaqI	TCGA	2 cut(s)	432, 1020
TatI	WGTACW	2 cut(s)	18, 708
TfiI	GAWTC	2 cut(s)	529, 1012
Tru1I	TTAA	7 cut(s)	12, 171, 183, 372, 444, 536, 1008
Tru9I	TTAA	7 cut(s)	12, 171, 183, 372, 444, 536, 1008
TscAI	CASTG	3 cut(s)	103, 346, 811
TseI	GCWGC	3 cut(s)	125, 286, 887
TspDTI	ATGAA	5 cut(s)	276, 302, 668, 752, 777
TspRI	CASTG	3 cut(s)	103, 346, 811
Van91I	CCANNNNNTGG	1 cut(s)	604
Vha464I	CTTAAG	2 cut(s)	11, 1007
XapI	RAATTY	3 cut(s)	87, 140, 984
XceI	RCATGY	1 cut(s)	884
XmiI	GTMKAC	1 cut(s)	675
XspI	CTAG	3 cut(s)	381, 687, 797
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.