Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0036074.1

Orthogroup ID

OG0003787

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1485

Gene Structure 1485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0036074.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 913 bp

gcttaaggagtacacggccgaggagatcgtattggctactgataatttttcttggcggttgagatcagagtctgtaggaatttggggcactgtttataaaggctatgttgacgatgcagcaatttccatcaaattcctcacctcccccgaggaacgtgtttttaactctatggttaagtccgtccgactaattagacaccctcaccttctttcaatgttgggcttctgctccgagctcaagtgctttgtctatgaacgtatagagtatagtcgcgtgctgcacgaggtcgtcaagcaaaaccttcattggcacgatcgcattcgtattgccagtgatatttgttcggccctgtcctacattattaagagggctaggtgtgaacctattgttcctgactatctcaatgcatccaacattcttgtcgatcgccatgttaatgccaaaatcaatgttgtactgaaaagatgcgacaagcctgatcttgcatgggatgtaaagacttttggctatctggttctgaatctcttaactggcattcccggaaattgtttttcttactgttatgttagatggtttgttggtttgccccacggtttggacaagacggcaggtcaatggcctatggatttggctgaggaattgatgaatgtgtgccgacgttgtgtagactgtaatcctagagatgattttaggaaaaagtacattatggtgataatagtgaaaaagatgaacgatattagagaaaaggctgatgaaatggtcagaggacgtgcaggaacatatgatctagttaccagtggtagagatcaggactctgatattccaacacaattctactgccccatatataaggtaactttttatgtgtttgattatttactaggtatctatatagtaggaattaaaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr U-box

Protein Analysis

303

Amino Acids

35.15

Weight (kDa)

8.41

Isoelectric Point (pI)

26.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01670 AT1G01670 AT1G01670 AT1G01680
fragaria_vesca	FvH4_1g19560 FvH4_1g19563
malus_domestica	MD07G1249800.v1.1
pyrus_communis	pycom01g09160
rosa_chinensis	RchiOBHm_Chr2g0111071 RchiOBHm_Chr2g0111091 RchiOBHm_Chr2g0111101
rosa_laevigata	RLG00000017863 RLG00000017864
rosa_multiflora	Rmu_co8348129.1_g000001 Rmu_sc0012949.1_g000001 Rmu_sc0018570.1_g000001 Rmu_sc0019445.1_g000002 Rmu_sc0036074.1_g000001 Rmu_sc0040262.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132710
rosa_rugosa	Rorug02G0170900
rosa_samantha	Rh2AG223400 Rh2AG223600 Rh2AG223700 Rh2AG223800 Rh2BG235300 Rh2BG235400 Rh2CG226800 Rh2CG226900 Rh2DG231100 Rh2DG231300 Rh2DG231400
rosa_wichuraiana	Rw2G017240 Rw2G017260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	97
Acc36I	ACCTGC	1 cut(s)	600
AccB7I	CCANNNNNTGG	1 cut(s)	596
AccI	GTMKAC	1 cut(s)	667
AccII	CGCG	1 cut(s)	274
AciI	CCGC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	16
AcsI	RAATTY	2 cut(s)	79, 132
AfaI	GTAC	3 cut(s)	12, 457, 702
AfiI	CCNNNNNNNGG	1 cut(s)	596
AflII	CTTAAG	1 cut(s)	3
AflIII	ACRYGT	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	214
AhdI	GACNNNNNGTC	1 cut(s)	610
AjiI	CACGTC	1 cut(s)	771
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
Alw21I	GWGCWC	1 cut(s)	238
AlwNI	CAGNNNCTG	1 cut(s)	72
Ama87I	CYCGRG	1 cut(s)	147
AoxI	GGCC	3 cut(s)	16, 346, 618
ApeKI	GCWGC	2 cut(s)	117, 278
ApoI	RAATTY	2 cut(s)	79, 132
AspS9I	GGNCC	1 cut(s)	347
AsuC2I	CCSGG	1 cut(s)	541
AsuHPI	GGTGA	3 cut(s)	131, 195, 722
AvaI	CYCGRG	1 cut(s)	147
BaeGI	GKGCMC	1 cut(s)	90
BanII	GRGCYC	1 cut(s)	238
BauI	CACGAG	1 cut(s)	282
Bbv12I	GWGCWC	1 cut(s)	238
BbvCI	CCTCAGC	1 cut(s)	634
BbvI	GCAGC	2 cut(s)	129, 265
BccI	CCATC	2 cut(s)	135, 565
BceAI	ACGGC	2 cut(s)	31, 622
BcnI	CCSGG	1 cut(s)	541
BfaI	CTAG	4 cut(s)	373, 679, 789, 882
BfmI	CTRYAG	1 cut(s)	73
BfrI	CTTAAG	1 cut(s)	3
BfuAI	ACCTGC	1 cut(s)	600
BisI	GCNGC	2 cut(s)	118, 279
BlsI	GCNGC	2 cut(s)	119, 280
Bme1390I	CCNGG	1 cut(s)	541
BmeRI	GACNNNNNGTC	1 cut(s)	610
BmeT110I	CYCGRG	1 cut(s)	147
BmgBI	CACGTC	1 cut(s)	771
BmgT120I	GGNCC	1 cut(s)	347
BmrFI	CCNGG	1 cut(s)	541
BmsI	GCATC	3 cut(s)	104, 417, 456
Bpu10I	CCTNAGC	1 cut(s)	634
BpuEI	CTTGAG	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	541
BsaJI	CCNNGG	3 cut(s)	19, 148, 590
Bsc4I	CCNNNNNNNGG	1 cut(s)	596
Bse1I	ACTGG	3 cut(s)	331, 536, 796
BseDI	CCNNGG	3 cut(s)	19, 148, 590
BseGI	GGATG	2 cut(s)	408, 497
BseLI	CCNNNNNNNGG	1 cut(s)	596
BseMII	CTCAG	1 cut(s)	625
BseNI	ACTGG	3 cut(s)	331, 536, 796
BseRI	GAGGAG	1 cut(s)	36
BseSI	GKGCMC	1 cut(s)	90
BseX3I	CGGCCG	1 cut(s)	16
BseXI	GCAGC	2 cut(s)	129, 265
BsgI	GTGCAG	2 cut(s)	264, 793
Bsh1236I	CGCG	1 cut(s)	274
Bsh1285I	CGRYCG	3 cut(s)	19, 317, 428
BshFI	GGCC	3 cut(s)	18, 348, 620
BsiEI	CGRYCG	3 cut(s)	19, 317, 428
BsiHKAI	GWGCWC	1 cut(s)	238
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	541
BslI	CCNNNNNNNGG	1 cut(s)	596
BsmI	GAATGC	2 cut(s)	319, 535
BsnI	GGCC	3 cut(s)	18, 348, 620
BsoBI	CYCGRG	1 cut(s)	147
Bsp1286I	GDGCHC	2 cut(s)	90, 238
Bsp143I	GATC	7 cut(s)	25, 63, 314, 425, 479, 785, 806
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	3 cut(s)	18, 348, 620
BspCNI	CTCAG	1 cut(s)	626
BspFNI	CGCG	1 cut(s)	274
BspMI	ACCTGC	1 cut(s)	600
BspTI	CTTAAG	1 cut(s)	3
BsrI	ACTGG	3 cut(s)	331, 536, 796
BssECI	CCNNGG	3 cut(s)	19, 148, 590
BssMI	GATC	7 cut(s)	25, 63, 314, 425, 479, 785, 806
BssSI	CACGAG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	282
Bst4CI	ACNGT	4 cut(s)	92, 561, 594, 672
BstAFI	CTTAAG	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	1 cut(s)	634
BstDSI	CCRYGG	1 cut(s)	590
BstF5I	GGATG	2 cut(s)	408, 497
BstFNI	CGCG	1 cut(s)	274
BstKTI	GATC	7 cut(s)	28, 66, 317, 428, 482, 788, 809
BstMBI	GATC	7 cut(s)	25, 63, 314, 425, 479, 785, 806
BstMCI	CGRYCG	3 cut(s)	19, 317, 428
BstSCI	CCNGG	1 cut(s)	539
BstSFI	CTRYAG	1 cut(s)	73
BstSLI	GKGCMC	1 cut(s)	90
BstUI	CGCG	1 cut(s)	274
BstV1I	GCAGC	2 cut(s)	129, 265
BstZI	CGGCCG	1 cut(s)	16
BsuRI	GGCC	3 cut(s)	18, 348, 620
BtgI	CCRYGG	1 cut(s)	590
BtrI	CACGTC	1 cut(s)	771
BtsCI	GGATG	2 cut(s)	408, 497
BtsIMutI	CAGTG	3 cut(s)	88, 338, 803
BveI	ACCTGC	1 cut(s)	600
Cac8I	GCNNGC	1 cut(s)	276
CaiI	CAGNNNCTG	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	347
Csp6I	GTAC	3 cut(s)	11, 456, 701
CviAII	CATG	2 cut(s)	432, 487
CviQI	GTAC	3 cut(s)	11, 456, 701
DdeI	CTNAG	1 cut(s)	634
DpnI	GATC	7 cut(s)	27, 65, 316, 427, 481, 787, 808
DpnII	GATC	7 cut(s)	25, 63, 314, 425, 479, 785, 806
DriI	GACNNNNNGTC	1 cut(s)	610
EaeI	YGGCCR	1 cut(s)	16
EagI	CGGCCG	1 cut(s)	16
Eam1105I	GACNNNNNGTC	1 cut(s)	610
Ecl136II	GAGCTC	1 cut(s)	236
EclXI	CGGCCG	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	238
Eco52I	CGGCCG	1 cut(s)	16
Eco53kI	GAGCTC	1 cut(s)	236
Eco88I	CYCGRG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	236
EcoT22I	ATGCAT	1 cut(s)	410
EcoT38I	GRGCYC	1 cut(s)	238
FaeI	CATG	2 cut(s)	435, 490
FatI	CATG	2 cut(s)	431, 486
FauNDI	CATATG	1 cut(s)	782
FblI	GTMKAC	1 cut(s)	667
Fnu4HI	GCNGC	2 cut(s)	118, 279
FokI	GGATG	2 cut(s)	395, 504
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	2 cut(s)	118, 279
FspBI	CTAG	4 cut(s)	373, 679, 789, 882
GluI	GCNGC	2 cut(s)	118, 279
HaeIII	GGCC	3 cut(s)	18, 348, 620
HapII	CCGG	1 cut(s)	541
Hin1II	CATG	2 cut(s)	435, 490
HincII	GTYRAC	1 cut(s)	110
HindII	GTYRAC	1 cut(s)	110
HinfI	GANTC	3 cut(s)	69, 521, 813
HpaII	CCGG	1 cut(s)	541
HphI	GGTGA	3 cut(s)	131, 195, 722
Hpy166II	GTNNAC	4 cut(s)	13, 110, 381, 668
Hpy188I	TCNGA	6 cut(s)	68, 186, 233, 520, 765, 818
Hpy188III	TCNNGA	2 cut(s)	393, 810
Hpy8I	GTNNAC	4 cut(s)	13, 110, 381, 668
Hpy99I	CGWCG	1 cut(s)	661
HpyAV	CCTTC	2 cut(s)	216, 312
HpyCH4III	ACNGT	4 cut(s)	92, 561, 594, 672
HpyCH4IV	ACGT	4 cut(s)	155, 257, 659, 770
HpyCH4V	TGCA	5 cut(s)	117, 281, 408, 486, 774
HpyF3I	CTNAG	1 cut(s)	634
HpySE526I	ACGT	4 cut(s)	155, 257, 659, 770
Hsp92II	CATG	2 cut(s)	435, 490
Kzo9I	GATC	7 cut(s)	25, 63, 314, 425, 479, 785, 806
LmnI	GCTCC	1 cut(s)	234
Lsp1109I	GCAGC	2 cut(s)	129, 265
LweI	GCATC	3 cut(s)	104, 417, 456
MaeI	CTAG	4 cut(s)	373, 679, 789, 882
MaeII	ACGT	4 cut(s)	155, 257, 659, 770
MaeIII	GTNAC	2 cut(s)	791, 854
MalI	GATC	7 cut(s)	27, 65, 316, 427, 481, 787, 808
MboI	GATC	7 cut(s)	25, 63, 314, 425, 479, 785, 806
MhlI	GDGCHC	2 cut(s)	90, 238
MluCI	AATT	9 cut(s)	44, 79, 121, 132, 190, 545, 639, 831, 901
MlyI	GAGTC	2 cut(s)	78, 807
MmeI	TCCRAC	3 cut(s)	209, 436, 849
MnlI	CCTC	9 cut(s)	14, 143, 147, 152, 211, 278, 361, 629, 759
Mph1103I	ATGCAT	1 cut(s)	410
MseI	TTAA	8 cut(s)	4, 163, 175, 364, 436, 528, 904, 911
MslI	CAYNNNNRTG	2 cut(s)	436, 708
MspCI	CTTAAG	1 cut(s)	3
MspI	CCGG	1 cut(s)	541
MspR9I	CCNGG	1 cut(s)	541
Mva1269I	GAATGC	2 cut(s)	319, 535
MvnI	CGCG	1 cut(s)	274
NciI	CCSGG	1 cut(s)	541
NdeI	CATATG	1 cut(s)	782
NdeII	GATC	7 cut(s)	25, 63, 314, 425, 479, 785, 806
NlaIII	CATG	2 cut(s)	435, 490
NmeAIII	GCCGAG	1 cut(s)	44
NsiI	ATGCAT	1 cut(s)	410
PctI	GAATGC	2 cut(s)	319, 535
PfeI	GAWTC	1 cut(s)	521
PflMI	CCANNNNNTGG	1 cut(s)	596
PfoI	TCCNGGA	1 cut(s)	539
PkrI	GCNGC	2 cut(s)	119, 280
Ple19I	CGATCG	2 cut(s)	317, 428
PleI	GAGTC	2 cut(s)	77, 807
PpsI	GAGTC	2 cut(s)	77, 807
PsiI	TTATAA	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	238
PspPI	GGNCC	1 cut(s)	347
PstNI	CAGNNNCTG	1 cut(s)	72
PvuI	CGATCG	2 cut(s)	317, 428
RsaI	GTAC	3 cut(s)	12, 457, 702
RsaNI	GTAC	3 cut(s)	11, 456, 701
RseI	CAYNNNNRTG	2 cut(s)	436, 708
SacI	GAGCTC	1 cut(s)	238
SaqAI	TTAA	8 cut(s)	4, 163, 175, 364, 436, 528, 904, 911
SatI	GCNGC	2 cut(s)	118, 279
Sau3AI	GATC	7 cut(s)	25, 63, 314, 425, 479, 785, 806
Sau96I	GGNCC	1 cut(s)	347
SchI	GAGTC	2 cut(s)	78, 807
ScrFI	CCNGG	1 cut(s)	541
SduI	GDGCHC	2 cut(s)	90, 238
SfaNI	GCATC	3 cut(s)	104, 417, 456
SfcI	CTRYAG	1 cut(s)	73
SmiMI	CAYNNNNRTG	2 cut(s)	436, 708
SmlI	CTYRAG	2 cut(s)	3, 237
SmoI	CTYRAG	2 cut(s)	3, 237
Sse9I	AATT	9 cut(s)	44, 79, 121, 132, 190, 545, 639, 831, 901
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	4 cut(s)	373, 679, 789, 882
SstI	GAGCTC	1 cut(s)	238
StyD4I	CCNGG	1 cut(s)	539
TaaI	ACNGT	4 cut(s)	92, 561, 594, 672
TaiI	ACGT	4 cut(s)	158, 260, 662, 773
TaqI	TCGA	1 cut(s)	424
TasI	AATT	9 cut(s)	44, 79, 121, 132, 190, 545, 639, 831, 901
TatI	WGTACW	3 cut(s)	10, 455, 700
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	8 cut(s)	4, 163, 175, 364, 436, 528, 904, 911
Tru9I	TTAA	8 cut(s)	4, 163, 175, 364, 436, 528, 904, 911
TscAI	CASTG	3 cut(s)	95, 338, 803
TseI	GCWGC	2 cut(s)	117, 278
TspDTI	ATGAA	5 cut(s)	268, 294, 660, 744, 769
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	3 cut(s)	95, 338, 803
Van91I	CCANNNNNTGG	1 cut(s)	596
Vha464I	CTTAAG	1 cut(s)	3
XapI	RAATTY	2 cut(s)	79, 132
XmiI	GTMKAC	1 cut(s)	667
XspI	CTAG	4 cut(s)	373, 679, 789, 882
Zsp2I	ATGCAT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.