Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003787

Physical Location & Seq

Genomic Coordinates Forward (+)

22446228 .. 22447816

Gene Structure 1589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017864

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCTACTGATATGGCCAGGCTTAAGGAGTACTCAGCCGAGGAGATTGTATTGGCTACTGATAATTTTTTTTGGCGGTTGAGATCAGAGTCTCTAGGAATTTGGGGCAGTGTTTATAAAGGCTATGTTGACAATGAAGCAGTTTCCATCAAATTCCTCACCTCCCCCCAAGAACATGTTTTTGAATCTAGGGTTAAGTCCCTCAGACTAATTAGACACCCTCACCTTCTTTCAATGTTGGGCTTCTGCTCCGAGCTCAAGTGCTTTGTCTATGAACATATAGAGTATAGTCCCATGCTGCACGAGGTCGTCAAGGAAAACCTTCGTTGGCACGATCGCATTCGTATTGCCGGTCAGATTTGCTCGGCCTTGTCCTACATTATTAAGAGGGCTAGGTGTGGACCTATTGTTCCTGACTATCTCAATGCATCCAACATTCTTATCGATCGCTACCTTAATGCCAAAATCAATGTTGTGCTGAAAAGATGCGACAAGCCGGATTTTGCATGGGATGTAAAGACTTTTGGCTATCTGGTTCTGACTCTCTTAACTAGCATTCCCGGAAATTTTTTTTCTTACTGTTATGTTAGATGGTGCGTTGGTTTGCCCCACGGTTTGGACAAGGCGGCAGGTCAATGGCCTATGGATTTGGCTGAGAAATTGTTGAATGTGTGCCGACGTTGTGTAGACTGTAATCCTAGAGATGATTTTAGGAAAAAGTACATTATGGTGATAGTAGTGAAAGAGATGAACGAAATTAGAGAAAGGGCTGATGAAATTGTCCGAGGATGTGCAGGAACATATGATCTAGTTACCAGTGGTAGAGATCAGGAGTCTGATATTCCAACACAATTCTATTGCCCCATATATAAGGAAGTAATGAAGGATCCACATGTGGCTGCCGACGGATTTTCCTATGAGCGAGAAGGCATAGAGAAATGGTTCCAAACCGGGCACGACACATCACCAATGACCAATTTGAAGCTCAAGAATAAAATTATTACCCCTAATGGTACCCTTAAGCTTCTTATCAAAGACTGGTATCGTGAAAGATCCATTCCTTATCCAAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr U-box

Protein Analysis

359

Amino Acids

41.57

Weight (kDa)

8.34

Isoelectric Point (pI)

26.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	33 - 156	6.7e-10	Protein tyrosine and serine/threonine kinase
U-box	PF04564	281 - 352	8.1e-17	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01670 AT1G01670 AT1G01670 AT1G01680
fragaria_vesca	FvH4_1g19560 FvH4_1g19563
malus_domestica	MD07G1249800.v1.1
pyrus_communis	pycom01g09160
rosa_chinensis	RchiOBHm_Chr2g0111071 RchiOBHm_Chr2g0111091 RchiOBHm_Chr2g0111101
rosa_laevigata	RLG00000017863 RLG00000017864
rosa_multiflora	Rmu_co8348129.1_g000001 Rmu_sc0012949.1_g000001 Rmu_sc0018570.1_g000001 Rmu_sc0019445.1_g000002 Rmu_sc0036074.1_g000001 Rmu_sc0040262.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132710
rosa_rugosa	Rorug02G0170900
rosa_samantha	Rh2AG223400 Rh2AG223600 Rh2AG223700 Rh2AG223800 Rh2BG235300 Rh2BG235400 Rh2CG226800 Rh2CG226900 Rh2DG231100 Rh2DG231300 Rh2DG231400
rosa_wichuraiana	Rw2G017240 Rw2G017260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	117
Acc36I	ACCTGC	1 cut(s)	620
Acc65I	GGTACC	1 cut(s)	1013
AccB1I	GGYRCC	1 cut(s)	1013
AccB7I	CCANNNNNTGG	1 cut(s)	616
AccI	GTMKAC	1 cut(s)	687
AciI	CCGC	2 cut(s)	76, 626
AclWI	GGATC	3 cut(s)	881, 894, 1047
AcoI	YGGCCR	1 cut(s)	15
AcsI	RAATTY	3 cut(s)	99, 152, 565
AfaI	GTAC	3 cut(s)	32, 722, 1015
AfiI	CCNNNNNNNGG	1 cut(s)	616
AflII	CTTAAG	2 cut(s)	23, 1019
AflIII	ACRYGT	2 cut(s)	175, 892
AgsI	TTSAA	4 cut(s)	185, 234, 667, 982
AjnI	CCWGG	1 cut(s)	17
AloI	GAACNNNNNNTCC	2 cut(s)	393, 425
AluBI	AGCT	3 cut(s)	256, 985, 1024
AluI	AGCT	3 cut(s)	256, 985, 1024
Alw21I	GWGCWC	1 cut(s)	258
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	3 cut(s)	881, 894, 1047
AoxI	GGCC	3 cut(s)	15, 366, 638
ApeKI	GCWGC	2 cut(s)	298, 899
ApoI	RAATTY	3 cut(s)	99, 152, 565
Asp700I	GAANNNNTTC	2 cut(s)	321, 941
Asp718I	GGTACC	1 cut(s)	1013
AspS9I	GGNCC	1 cut(s)	401
AsuC2I	CCSGG	2 cut(s)	561, 952
AsuHPI	GGTGA	4 cut(s)	151, 215, 742, 957
AvaII	GGWCC	1 cut(s)	401
BaeGI	GKGCMC	1 cut(s)	957
BalI	TGGCCA	1 cut(s)	17
BamHI	GGATCC	1 cut(s)	886
BanI	GGYRCC	1 cut(s)	1013
BanII	GRGCYC	1 cut(s)	258
BauI	CACGAG	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	2 cut(s)	285, 886
BccI	CCATC	2 cut(s)	155, 585
BciT130I	CCWGG	1 cut(s)	19
BcnI	CCSGG	2 cut(s)	561, 952
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	6 cut(s)	95, 189, 393, 552, 699, 809
BfrI	CTTAAG	2 cut(s)	23, 1019
BfuAI	ACCTGC	1 cut(s)	620
BisI	GCNGC	3 cut(s)	299, 627, 900
BlsI	GCNGC	3 cut(s)	300, 628, 901
BmcAI	AGTACT	1 cut(s)	32
Bme1390I	CCNGG	3 cut(s)	19, 561, 952
Bme18I	GGWCC	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	401
BmiI	GGNNCC	3 cut(s)	888, 944, 1015
BmrFI	CCNGG	3 cut(s)	19, 561, 952
BmsI	GCATC	2 cut(s)	437, 476
BpuEI	CTTGAG	2 cut(s)	242, 971
BpuMI	CCSGG	2 cut(s)	561, 952
Bsa29I	ATCGAT	1 cut(s)	444
BsaJI	CCNNGG	3 cut(s)	39, 610, 784
Bsc4I	CCNNNNNNNGG	1 cut(s)	616
Bse118I	RCCGGY	1 cut(s)	350
Bse1I	ACTGG	2 cut(s)	816, 1043
BseBI	CCWGG	1 cut(s)	19
BseCI	ATCGAT	1 cut(s)	444
BseDI	CCNNGG	3 cut(s)	39, 610, 784
BseGI	GGATG	3 cut(s)	428, 517, 794
BseLI	CCNNNNNNNGG	1 cut(s)	616
BseMII	CTCAG	3 cut(s)	48, 217, 645
BseNI	ACTGG	2 cut(s)	816, 1043
BseRI	GAGGAG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	957
BseXI	GCAGC	2 cut(s)	285, 886
BsgI	GTGCAG	2 cut(s)	284, 813
Bsh1285I	CGRYCG	2 cut(s)	337, 448
BshFI	GGCC	3 cut(s)	17, 368, 640
BshNI	GGYRCC	1 cut(s)	1013
BshVI	ATCGAT	1 cut(s)	444
BsiEI	CGRYCG	2 cut(s)	337, 448
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	4 cut(s)	351, 497, 561, 951
BslFI	GGGAC	2 cut(s)	184, 276
BslI	CCNNNNNNNGG	1 cut(s)	616
BsmAI	GTCTC	1 cut(s)	96
BsmFI	GGGAC	2 cut(s)	184, 276
BsmI	GAATGC	2 cut(s)	339, 555
BsnI	GGCC	3 cut(s)	17, 368, 640
Bsp1286I	GDGCHC	2 cut(s)	258, 957
Bsp143I	GATC	7 cut(s)	83, 334, 445, 805, 826, 886, 1052
BspACI	CCGC	2 cut(s)	76, 626
BspANI	GGCC	3 cut(s)	17, 368, 640
BspCNI	CTCAG	3 cut(s)	47, 216, 646
BspDI	ATCGAT	1 cut(s)	444
BspLI	GGNNCC	3 cut(s)	888, 944, 1015
BspMI	ACCTGC	1 cut(s)	620
BspPI	GGATC	3 cut(s)	881, 894, 1047
BspT107I	GGYRCC	1 cut(s)	1013
BspTI	CTTAAG	2 cut(s)	23, 1019
BsrFI	RCCGGY	1 cut(s)	350
BsrI	ACTGG	2 cut(s)	816, 1043
BssAI	RCCGGY	1 cut(s)	350
BssECI	CCNNGG	3 cut(s)	39, 610, 784
BssMI	GATC	7 cut(s)	83, 334, 445, 805, 826, 886, 1052
BssSI	CACGAG	1 cut(s)	302
Bst2BI	CACGAG	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	19
Bst4CI	ACNGT	3 cut(s)	581, 614, 692
BstAFI	CTTAAG	2 cut(s)	23, 1019
BstDEI	CTNAG	3 cut(s)	34, 203, 654
BstDSI	CCRYGG	1 cut(s)	610
BstF5I	GGATG	3 cut(s)	428, 517, 794
BstKTI	GATC	7 cut(s)	86, 337, 448, 808, 829, 889, 1055
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	7 cut(s)	83, 334, 445, 805, 826, 886, 1052
BstMCI	CGRYCG	2 cut(s)	337, 448
BstNI	CCWGG	1 cut(s)	19
BstNSI	RCATGY	2 cut(s)	179, 896
BstSCI	CCNGG	3 cut(s)	17, 559, 950
BstSLI	GKGCMC	1 cut(s)	957
BstV1I	GCAGC	2 cut(s)	285, 886
BstX2I	RGATCY	2 cut(s)	886, 1052
BstYI	RGATCY	2 cut(s)	886, 1052
Bsu15I	ATCGAT	1 cut(s)	444
BsuRI	GGCC	3 cut(s)	17, 368, 640
BsuTUI	ATCGAT	1 cut(s)	444
BtgI	CCRYGG	1 cut(s)	610
BtsCI	GGATG	3 cut(s)	428, 517, 794
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	115, 823
BveI	ACCTGC	1 cut(s)	620
Cfr10I	RCCGGY	1 cut(s)	350
Cfr13I	GGNCC	1 cut(s)	401
ClaI	ATCGAT	1 cut(s)	444
Csp6I	GTAC	3 cut(s)	31, 721, 1014
CviAII	CATG	4 cut(s)	176, 295, 507, 893
CviQI	GTAC	3 cut(s)	31, 721, 1014
DdeI	CTNAG	3 cut(s)	34, 203, 654
DpnI	GATC	7 cut(s)	85, 336, 447, 807, 828, 888, 1054
DpnII	GATC	7 cut(s)	83, 334, 445, 805, 826, 886, 1052
EaeI	YGGCCR	1 cut(s)	15
Ecl136II	GAGCTC	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	401
Eco53kI	GAGCTC	1 cut(s)	256
EcoICRI	GAGCTC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	17
EcoT22I	ATGCAT	1 cut(s)	430
EcoT38I	GRGCYC	1 cut(s)	258
FaeI	CATG	4 cut(s)	179, 298, 510, 896
FaqI	GGGAC	2 cut(s)	184, 276
FatI	CATG	4 cut(s)	175, 294, 506, 892
FauNDI	CATATG	1 cut(s)	802
FblI	GTMKAC	1 cut(s)	687
Fnu4HI	GCNGC	3 cut(s)	299, 627, 900
FokI	GGATG	3 cut(s)	415, 524, 801
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	3 cut(s)	299, 627, 900
FspBI	CTAG	6 cut(s)	95, 189, 393, 552, 699, 809
GluI	GCNGC	3 cut(s)	299, 627, 900
HaeIII	GGCC	3 cut(s)	17, 368, 640
HapII	CCGG	4 cut(s)	351, 497, 561, 951
Hin1II	CATG	4 cut(s)	179, 298, 510, 896
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	1022
HinfI	GANTC	4 cut(s)	89, 185, 541, 833
HpaII	CCGG	4 cut(s)	351, 497, 561, 951
HphI	GGTGA	4 cut(s)	151, 215, 742, 957
Hpy166II	GTNNAC	3 cut(s)	130, 401, 688
Hpy188I	TCNGA	7 cut(s)	88, 206, 253, 357, 540, 785, 838
Hpy188III	TCNNGA	4 cut(s)	413, 830, 988, 1046
Hpy8I	GTNNAC	3 cut(s)	130, 401, 688
Hpy99I	CGWCG	2 cut(s)	681, 908
HpyAV	CCTTC	4 cut(s)	236, 332, 877, 920
HpyCH4III	ACNGT	3 cut(s)	581, 614, 692
HpyCH4IV	ACGT	1 cut(s)	679
HpyCH4V	TGCA	4 cut(s)	301, 428, 506, 794
HpyF3I	CTNAG	3 cut(s)	34, 203, 654
HpySE526I	ACGT	1 cut(s)	679
Hsp92II	CATG	4 cut(s)	179, 298, 510, 896
KpnI	GGTACC	1 cut(s)	1017
Kzo9I	GATC	7 cut(s)	83, 334, 445, 805, 826, 886, 1052
LmnI	GCTCC	1 cut(s)	254
Lsp1109I	GCAGC	2 cut(s)	285, 886
LweI	GCATC	2 cut(s)	437, 476
MaeI	CTAG	6 cut(s)	95, 189, 393, 552, 699, 809
MaeII	ACGT	1 cut(s)	679
MaeIII	GTNAC	1 cut(s)	811
MalI	GATC	7 cut(s)	85, 336, 447, 807, 828, 888, 1054
MboI	GATC	7 cut(s)	83, 334, 445, 805, 826, 886, 1052
MflI	RGATCY	2 cut(s)	886, 1052
MhlI	GDGCHC	2 cut(s)	258, 957
MlsI	TGGCCA	1 cut(s)	17
MluNI	TGGCCA	1 cut(s)	17
MlyI	GAGTC	3 cut(s)	98, 535, 842
MmeI	TCCRAC	2 cut(s)	456, 869
MnlI	CCTC	8 cut(s)	34, 167, 172, 212, 231, 298, 381, 779
Mox20I	TGGCCA	1 cut(s)	17
Mph1103I	ATGCAT	1 cut(s)	430
MroXI	GAANNNNTTC	2 cut(s)	321, 941
MscI	TGGCCA	1 cut(s)	17
MseI	TTAA	6 cut(s)	24, 195, 384, 456, 548, 1020
MslI	CAYNNNNRTG	1 cut(s)	728
Msp20I	TGGCCA	1 cut(s)	17
MspCI	CTTAAG	2 cut(s)	23, 1019
MspI	CCGG	4 cut(s)	351, 497, 561, 951
MspR9I	CCNGG	3 cut(s)	19, 561, 952
Mva1269I	GAATGC	2 cut(s)	339, 555
MvaI	CCWGG	1 cut(s)	19
NciI	CCSGG	2 cut(s)	561, 952
NdeI	CATATG	1 cut(s)	802
NdeII	GATC	7 cut(s)	83, 334, 445, 805, 826, 886, 1052
NlaIII	CATG	4 cut(s)	179, 298, 510, 896
NlaIV	GGNNCC	3 cut(s)	888, 944, 1015
NmeAIII	GCCGAG	2 cut(s)	64, 344
NsiI	ATGCAT	1 cut(s)	430
NspI	RCATGY	2 cut(s)	179, 896
PciI	ACATGT	2 cut(s)	175, 892
PctI	GAATGC	2 cut(s)	339, 555
PdmI	GAANNNNTTC	2 cut(s)	321, 941
PfeI	GAWTC	1 cut(s)	185
PflMI	CCANNNNNTGG	1 cut(s)	616
PfoI	TCCNGGA	1 cut(s)	559
PkrI	GCNGC	3 cut(s)	300, 628, 901
Ple19I	CGATCG	2 cut(s)	337, 448
PleI	GAGTC	3 cut(s)	97, 535, 841
PpsI	GAGTC	3 cut(s)	97, 535, 841
PscI	ACATGT	2 cut(s)	175, 892
PsiI	TTATAA	1 cut(s)	117
Psp124BI	GAGCTC	1 cut(s)	258
Psp6I	CCWGG	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	17
PspN4I	GGNNCC	3 cut(s)	888, 944, 1015
PspPI	GGNCC	1 cut(s)	401
PsuI	RGATCY	2 cut(s)	886, 1052
PvuI	CGATCG	2 cut(s)	337, 448
RsaI	GTAC	3 cut(s)	32, 722, 1015
RsaNI	GTAC	3 cut(s)	31, 721, 1014
RseI	CAYNNNNRTG	1 cut(s)	728
SacI	GAGCTC	1 cut(s)	258
SaqAI	TTAA	6 cut(s)	24, 195, 384, 456, 548, 1020
SatI	GCNGC	3 cut(s)	299, 627, 900
Sau3AI	GATC	7 cut(s)	83, 334, 445, 805, 826, 886, 1052
Sau96I	GGNCC	1 cut(s)	401
ScaI	AGTACT	1 cut(s)	32
SchI	GAGTC	3 cut(s)	98, 535, 842
ScrFI	CCNGG	3 cut(s)	19, 561, 952
SduI	GDGCHC	2 cut(s)	258, 957
SfaNI	GCATC	2 cut(s)	437, 476
SinI	GGWCC	1 cut(s)	401
SmiMI	CAYNNNNRTG	1 cut(s)	728
SmlI	CTYRAG	4 cut(s)	23, 257, 986, 1019
SmoI	CTYRAG	4 cut(s)	23, 257, 986, 1019
SsiI	CCGC	2 cut(s)	76, 626
SspMI	CTAG	6 cut(s)	95, 189, 393, 552, 699, 809
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	3 cut(s)	17, 559, 950
TaaI	ACNGT	3 cut(s)	581, 614, 692
TaiI	ACGT	1 cut(s)	682
TaqI	TCGA	1 cut(s)	444
TatI	WGTACW	2 cut(s)	30, 720
TauI	GCSGC	1 cut(s)	629
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	6 cut(s)	24, 195, 384, 456, 548, 1020
Tru9I	TTAA	6 cut(s)	24, 195, 384, 456, 548, 1020
TscAI	CASTG	2 cut(s)	115, 823
TseI	GCWGC	2 cut(s)	298, 899
TspDTI	ATGAA	5 cut(s)	150, 288, 764, 789, 896
TspGWI	ACGGA	1 cut(s)	921
TspRI	CASTG	2 cut(s)	115, 823
Van91I	CCANNNNNTGG	1 cut(s)	616
Vha464I	CTTAAG	2 cut(s)	23, 1019
VpaK11BI	GGWCC	1 cut(s)	401
XapI	RAATTY	3 cut(s)	99, 152, 565
XceI	RCATGY	2 cut(s)	179, 896
XmiI	GTMKAC	1 cut(s)	687
XmnI	GAANNNNTTC	2 cut(s)	321, 941
XspI	CTAG	6 cut(s)	95, 189, 393, 552, 699, 809
ZrmI	AGTACT	1 cut(s)	32
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.