Rorug02G0170900

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003787
Physical Location & Seq
Forward (+)
15413365 .. 15425884
12520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0170900.1

Sequence Viewer

Length: 4860 bp
ATGGAGTGGACGACGGTGCAGCATCTCGATCTACGACACGTCGCGCGGAGCACCAAACCCCTCCAGCCTCATGCCGCCGCCTTTCATCCGCATCAGGCCCTCGTCGCCGTCGCTATCGGCAACTACATCGTCGAAATGGATGCGTTGACGGGAAGCAAGATTGCATCTATTGATATCAGTATACCTGTTATCCGCATGGCATATAGTCCCACGAGTGGCCATTCTGTCATAGCGATCCATGAGGATGGTACTATTCGCTCCTGTGATTTTGATGCTGAACAAACTTGCGTGTTGCATTCACCTGAGAAGAAGTTGGATCAAATTACTCCTGATACAGAAGTCCATCTTGCTTTGACACCTCTCCAACCTGTAGTGTTTTTCGGGTTCCATAAAAGGATGAGTGTTACAGTTGTTGGGACTGTTGAAGGAGGAAGGGCACCAACAAAAATAAAGACAGATTTGAAAAAACCTATTGTGAATCTTGCATGCCACCCTCGCCATCCCGTCCTGTATGTTGCTTATGCAGATGGTTTGATTCGAGCATACAACATTCACACCTATGCAGTTCATTACACCTTACAGATCGACAACACCATAAAGCTTATCGGTGCTGGAGCGTTTGGTTTTCACCCAACATTGGAGTGGATTTTTGTTGGTGATAGACGGGGTACACTTCTTGCATGGGATGTTTCTACTGAGAGACCTAGTATGATTGGAATTACACAAGTGGGTTCCCAACCAATTTCTTCAGTTTCTTGGCTACCAATGTTGCGGTTACTTGTAACTGTAACCAGGGATGGAACTCTTCAAGTGTGGAAGACACGTGTTATAATTAATCCAAATAGACCTCCAATGCAAGCAAATTTCTTTGAACCTGCTGCAATTGAATCACTTGACATCCCTCGCATACTTTCTCAACAGGGCGGAGAAGCAGCTTACCCTTTACCGCGTATCAAAACATTAGAAGTTCACTCCAAACTGAATTTGGCAGCGCTTCTGTTCATAAATATGACAGGTGGAGACAATGTGAAAAATAGGGCCGCATACACTAGGGAAGGAAGGAAACAATTGTTTGCAGTTTTGCAAGGGGCAAGAGGATCCTCAGCGTCTGTTTTGAAAGAAAAGCTTTCATCTTTGGGGTCGTCTGGAATATTAGCTGAACATCAACTTCAAGCTCAACTACAAGAACATCATATGAAAGGGCGCAGTCATCTTACAATATCAGACATTGCTCGGAAGGCTTTTCTTCACAGTCATTTCATGGAAGGTCATGCCAAAAGTGCCCCAATATCTCGGCTGCCTCTAATTACTATTGTAGATTCTAAGCATCATCTAAAGGATGCTCCTGTATGTCAGCCATTTCACCTGGAGCTAAATTTCTTCAGTAAAGAGAATCGGGTTCTTCATTATCCTGTCAGAGCCTTTTGTATAGACGGGTCAAACCTTATGGCGTATAATCTGTCTTCTGGAGCAGATAGTATCTACAAGAGACTTCATACATCGGTTCCTGCAAATGTGGAATACCATCCAAAGTACCTGTTCTACAGTAAAAGACAGCGCATATTTCTTGTTGTCTATGAATTTAGTGGTGCTACAAATGAAGTTGTGCTTTATTTTGAAAATACTGATTCTCAGGCAGCAAACAGTAAATGCAGCACAGTAAAAGGTCGAGATGCAGCATTTATTGGTCCCAATGAGAATCAGTTTGCAATTCTTGATGATGATAAGACTGGACTGGCTTTACATATACTGCCTGGAAAGGCTACTCCAGAAGCTAATGAAAAAAATCTACTTGCTGACGAAAACCAATCTATGAATACTGATACTGCTGCCCCCCGAGGTCCAATGCAATTTATGTTTGAAAGTGAAGTGGATCGAATATTTTCCACTCCAATAGAGTCAACTCTGATGTTTGCTTCTCATGGGGATCAGATTGGCTTGGCAAAGCTGGTTCAAGGATACCGCCTTTCTAATGCTGGTGGTCATTATATAGCAACAACAAATGAAGGGAGAAAGTCAATCAAATTGAAACTTGATGAAATTGTACTTAAGGTTCACTGGCAAGAAACTCTTAGGGGCTATGTTGCAGGAATATTAACTACACAAAGAGTTCTTATAGTTTCAGCAGATCTAGATATACTGGCAGGAAGTTCTGCAAAATTTGATAAAGGACTTCCTTCATTTAGATCACTTTTATGGGTTGGGCCTGCACTTCTCTTTTCTACTACCACTGCAGTTAGTGTGCTTGGTTGGGATGGGAAAGTGAGGACTATACTCTCTCTCAGTATGCCTTATGCAGTTTTGGTTGGTGCGCTGAATGACCGGTTGTTGCTTGCTACCCCAACAGAAATAAATCCCAGACAAAAGAAGGGAGTTGAGATTAAGAGTTGTCTTGTTGGGCTCCTTGAACCTCTTCTTATTGGCTTTGCCACAATGCAAGAAAGATTTGAGCAGAAGCTTGACCTGCCAGAGATATTGTATCAAATAACATCAAGGTTTGACAGCCTGCGTATCACTCCAAGGTCTCTTGATATTCTGGCCAGAGGCTCTCCTGTTTGTGGAGATCTTTCTGTCTCATTATCTCAAGCAGGACCACAGTTCACACAGGTATTGCGTGGTGTCTATGCTATCAAAGCTCTCCGCTTTTCTACTGCTTTATCTGTTTTAAAAGATGAATTTCTGCGCTCTAGAGATTATCCAAGGTGTCCTCCAACCTCTCATCTGTTCCACCGGTTCCGGCAGTTGGGCTATGCATGTATCAAGTTTGGTCAGTTTGATAGTGCAAAAGAGACCTTTGAAGTCATAGCAGATTATGAAAGTATGCTCGATCTGTTTATATGCCACCTTAACCCCAGTGCCATGCGGCGTCTTGCTCAAAAATTGGAAGAAGATGGCACTGATTCAGAACTGAGGAGATACTGTGAGAGGATCTTAAGAGTGCGCTCTACTGGATGGACTCAAGGCATTTTTGCTAACTTTGCTGCTGAGAGTATGGTTCCGAAGGGTCCTGAATGGGGTGGTGGGAACTGGGAAATCAAAACCCCAACTAATATGAAGGCAATACCTCAATGGGAACTGGCTGCCGAGGTGATGCCATACATGAGGACTGATGACGGTGCCATTCCATCCATTATTGCTGATCATATTGGTGTTTACTTGGGTTCCATCAGAGGACGAGGCAACATTGTAGAAGTAAGGGAAGATAGCTTGGTCAAAGCTTTCAAACCCGCAGGTGGTGATAATAAGCCAAATGGTCTTCAAGACTCTTCAGTGACATCTACATCTAATATGTCCAAGGGAGTGCCTAGTGGTGGTTCATTGATGGGTCTTGAAACACTTACCAAACAAGTAGCCAGTTCCACTGCGGCAGATGAACAGGCTAAAGCTGAAGAAGAATTTAAGAAATCTATGTATGGTGCAGCTGATGGTAGCAGCAGTGATGAGGAGGGAACTTCAAAAACTAAAAGGTTACAGATTCGGATAAGAGACAAGCCAATTGCTTCTACCACAGTGGATGTTGATAAGATCAAAGAAGCCACGAAGCAATTCAAACTTGGTGAGGGGTTGGCTCGCCCCAGCAGAACCAAGTCATTGACTGGATCCCAGGACCTAAGCCAGATGTTATCCCAACCGCCTCCAGCCAGTAGTGGTTTTCCAAATGCTCGTGTAGGTTCCGCCCCTGGTGATCTGTTTGGTATGGATGCACCAACACAACCTGCAACTGTATCACAGCAAGCTCCTGTACCAGGTGTGGGAATGACAGCTGGACCAATTCCAGAGGACTTTTTCCAAAATACCATACCGTCCTTCCAGGTTGCAGCCTCACTGCCCCCTCCTGGAACCTATCTTTCAAAGATGGATCAAGCCTCTCAGGGGGCTGAAAGAAATACGGAAACACTTAACCAGGTCAATGCACCCAAAGCCACTATAGATCTTCCTGATGGTGGTGTTCCCCCTCAAGCTACTCAACAGGGTGTTCCACTGGGGTCCTTTGGACTTCCTGATGGTGGGGTTCCACCACAAGCCCCAAGCCAGGCTGCTGTTCAACAGACTCAGATTCAGTCAGCTCAACCTCCAATATCCACTCAGCCTCTTGATCTAAGTGCCCTTGGCATTCCGAATTCTGCCGATAATGGAAAACCTACAGGGCAGCCTCCTTCACCACCTTCTGCTGTGCGTCCTGGACAGGTTCCCCGTGGAGCAGCCGCTCCTATATGCTTTAAGACTGGAGTATCCCACCTTGAGCAGAATCAACTTTCGGACGCATTATCCTGCTTCGATGAAGCTTTTCTTGCACTAGCGAAGGACAACTCTCGCGGAGCTGATATCAAAGCACAAGCGACCATCTGTGCTCAATATAAGATAGCAGTCACTCTTCTTCAGGAAATTGGCCGGCTTCAGAGAGTCCATGGCCCTAGTGCAATTAGTGCAAAAGATGAGATGGCAAGACTAGCACGCCACCTGGGTTCTTTGCCTCTTCTGGCAAAGCACAGGATAAATTGTATTCGAACTGCCATTAAGAGGAATATGGAAGTGCAAAATTATGCTTATTCAAAACAGATGCTTGAGCTCCTACTGTCCAAAGCACCTCCAAGTAAGCAGGATGAGCTAAGGAGCTTGGTTGACATGTGTGTTCAAAGGGGTCTGTCCAACAAGTCCATTGATCCTCTTGAAGACCCTTCCCAGTTCTGTGCGGCCACACTTAGCCGTCTGTCAACCATTGGATACGATGTTTGTGACCTTTGTGGGGCTAAATTTTCGGCTCTCGCAACGCCTGGTTGCATTATATGCGGTATGGGAAGCATCAAAAGATCAGATGCACTTACAGGGCCGGGGCCTGTTCCTTCGCCGTTCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase_Tyr U-box

Protein Analysis

1619

Amino Acids

176.07

Weight (kDa)

8.57

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR36-Utp21_1st PF25171 18 - 272 1.7e-06 WDR36/Utp21 first beta-propeller
Beta-prop_THOC3 PF25174 155 - 275 3.8e-06 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 155 - 277 1.7e-06 CDC20/Fizzy WD40 domain
Beta-prop_EML_2 PF23414 161 - 274 5.3e-06 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 830
AarI CACCTGC 1 cut(s) 3221
Acc36I ACCTGC 4 cut(s) 883, 2472, 3221, 3724
AccB1I GGYRCC 2 cut(s) 436, 3116
AccBSI CCGCTC 1 cut(s) 4208
AccI GTMKAC 1 cut(s) 181
AccII CGCG 4 cut(s) 44, 46, 949, 4317
AcoI YGGCCR 4 cut(s) 217, 2538, 4390, 4695
AcsI RAATTY 9 cut(s) 862, 982, 1375, 1580, 2159, 2675, 3395, 4120, 4754
AcuI CTGAAG 6 cut(s) 732, 1366, 3252, 3408, 4364, 4382
AcvI CACGTG 1 cut(s) 824
AcyI GRCGYC 1 cut(s) 2866
AfaI GTAC 5 cut(s) 250, 670, 1535, 2046, 3744
AfeI AGCGCT 1 cut(s) 993
AflII CTTAAG 2 cut(s) 2048, 2932
AflIII ACRYGT 4 cut(s) 37, 821, 823, 4626
AgeI ACCGGT 2 cut(s) 2322, 2730
AjiI CACGTC 1 cut(s) 40
Alw21I GWGCWC 3 cut(s) 53, 4354, 4572
Alw26I GTCTC 7 cut(s) 694, 1014, 1483, 2529, 2578, 2783, 3480
AlwNI CAGNNNCTG 1 cut(s) 1109
Ama87I CYCGRG 1 cut(s) 1836
Aor51HI AGCGCT 1 cut(s) 993
ApoI RAATTY 9 cut(s) 862, 982, 1375, 1580, 2159, 2675, 3395, 4120, 4754
AseI ATTAAT 1 cut(s) 834
AsiGI ACCGGT 2 cut(s) 2322, 2730
Asp700I GAANNNNTTC 4 cut(s) 1882, 2412, 3545, 4287
AspLEI GCGC 7 cut(s) 46, 994, 1206, 1560, 2314, 2685, 2943
AsuC2I CCSGG 1 cut(s) 4833
AsuHPI GGTGA 9 cut(s) 291, 620, 668, 1355, 3100, 3248, 3569, 3695, 4152
AsuII TTCGAA 1 cut(s) 4507
AvaI CYCGRG 1 cut(s) 1836
AvaII GGWCC 7 cut(s) 1688, 1841, 2591, 3005, 3607, 3767, 3987
BaeGI GKGCMC 3 cut(s) 439, 1285, 4108
BaeI ACNNNNGTAYC 4 cut(s) 324, 357, 4215, 4248
BalI TGGCCA 2 cut(s) 219, 2540
BamHI GGATCC 2 cut(s) 1097, 3599
BanI GGYRCC 2 cut(s) 436, 3116
BanII GRGCYC 2 cut(s) 2403, 4572
BauI CACGAG 2 cut(s) 211, 3663
BbrPI CACGTG 1 cut(s) 824
BbsI GAAGAC 4 cut(s) 824, 1455, 3248, 4680
Bbv12I GWGCWC 3 cut(s) 53, 4354, 4572
BbvCI CCTCAGC 1 cut(s) 1102
BceAI ACGGC 3 cut(s) 92, 4692, 4834
BcgI CGANNNNNNTGC 4 cut(s) 109, 122, 143, 156
BciVI GTATCC 3 cut(s) 1952, 4243, 4718
BclI TGATCA 1 cut(s) 3139
BcnI CCSGG 1 cut(s) 4833
BcoDI GTCTC 7 cut(s) 694, 1014, 1483, 2529, 2578, 2783, 3480
BfaI CTAG 8 cut(s) 705, 1050, 2132, 2688, 3306, 4298, 4416, 4451
BfmI CTRYAG 5 cut(s) 369, 1543, 2232, 3927, 4143
BfoI RGCGCY 1 cut(s) 995
BfrI CTTAAG 2 cut(s) 2048, 2932
BfuAI ACCTGC 4 cut(s) 883, 2472, 3221, 3724
BfuI GTATCC 3 cut(s) 1952, 4243, 4718
BglII AGATCT 3 cut(s) 2128, 2563, 3931
Bme18I GGWCC 7 cut(s) 1688, 1841, 2591, 3005, 3607, 3767, 3987
BmeT110I CYCGRG 1 cut(s) 1836
BmgBI CACGTC 1 cut(s) 40
BmrI ACTGGG 4 cut(s) 2847, 3037, 3992, 4678
BmuI ACTGGG 4 cut(s) 2847, 3037, 3992, 4678
BpiI GAAGAC 4 cut(s) 824, 1455, 3248, 4680
BpmI CTGGAG 7 cut(s) 47, 633, 1388, 1488, 1752, 3621, 4248
Bpu10I CCTNAGC 3 cut(s) 1102, 3611, 4610
Bpu14I TTCGAA 1 cut(s) 4507
BpuEI CTTGAG 5 cut(s) 2568, 2943, 3942, 4262, 4586
BpuMI CCSGG 1 cut(s) 4833
BsaAI YACGTR 1 cut(s) 824
BsaHI GRCGYC 1 cut(s) 2866
BsaI GGTCTC 3 cut(s) 694, 2529, 2783
BsaWI WCCGGW 2 cut(s) 2322, 2730
BsaXI ACNNNNNCTCC 4 cut(s) 1011, 1041, 2905, 2935
Bse118I RCCGGY 3 cut(s) 2322, 2730, 4392
Bse3DI GCAATG 1 cut(s) 1227
BseMI GCAATG 1 cut(s) 1227
BseRI GAGGAG 2 cut(s) 2926, 3458
BseSI GKGCMC 3 cut(s) 439, 1285, 4108
BseYI CCCAGC 1 cut(s) 3575
BsgI GTGCAG 3 cut(s) 38, 2193, 3438
Bsh1236I CGCG 4 cut(s) 44, 46, 949, 4317
BshNI GGYRCC 2 cut(s) 436, 3116
BshTI ACCGGT 2 cut(s) 2322, 2730
BsiHKAI GWGCWC 3 cut(s) 53, 4354, 4572
BsiHKCI CYCGRG 1 cut(s) 1836
BsiSI CCGG 5 cut(s) 2323, 2731, 2737, 4393, 4832
BslFI GGGAC 3 cut(s) 192, 430, 1674
BsmAI GTCTC 7 cut(s) 694, 1014, 1483, 2529, 2578, 2783, 3480
BsmFI GGGAC 3 cut(s) 192, 430, 1674
BsmI GAATGC 2 cut(s) 295, 4113
Bso31I GGTCTC 3 cut(s) 694, 2529, 2783
BsoBI CYCGRG 1 cut(s) 1836
Bsp119I TTCGAA 1 cut(s) 4507
Bsp1286I GDGCHC 7 cut(s) 53, 439, 1285, 2403, 4108, 4354, 4572
Bsp19I CCATGG 1 cut(s) 4408
BspFNI CGCG 4 cut(s) 44, 46, 949, 4317
BspMAI CTGCAG 1 cut(s) 2236
BspMI ACCTGC 4 cut(s) 883, 2472, 3221, 3724
BspT104I TTCGAA 1 cut(s) 4507
BspT107I GGYRCC 2 cut(s) 436, 3116
BspTI CTTAAG 2 cut(s) 2048, 2932
BspTNI GGTCTC 3 cut(s) 694, 2529, 2783
BsrBI CCGCTC 1 cut(s) 4208
BsrDI GCAATG 1 cut(s) 1227
BsrFI RCCGGY 3 cut(s) 2322, 2730, 4392
BssAI RCCGGY 3 cut(s) 2322, 2730, 4392
BssNAI GTATAC 1 cut(s) 182
BssNI GRCGYC 1 cut(s) 2866
BssSI CACGAG 2 cut(s) 211, 3663
BssT1I CCWWGG 5 cut(s) 2519, 2699, 3294, 4108, 4408
Bst1107I GTATAC 1 cut(s) 182
Bst2BI CACGAG 2 cut(s) 211, 3663
Bst6I CTCTTC 5 cut(s) 810, 2418, 3271, 4380, 4482
BstACI GRCGYC 1 cut(s) 2866
BstAFI CTTAAG 2 cut(s) 2048, 2932
BstAPI GCANNNNNTGC 2 cut(s) 4427, 4788
BstBAI YACGTR 1 cut(s) 824
BstBI TTCGAA 1 cut(s) 4507
BstC8I GCNNGC 9 cut(s) 487, 858, 2208, 2334, 2507, 3571, 3735, 4394, 4456
BstDSI CCRYGG 2 cut(s) 4195, 4408
BstENI CCTNNNNNAGG 1 cut(s) 3744
BstFNI CGCG 4 cut(s) 44, 46, 949, 4317
BstH2I RGCGCY 1 cut(s) 995
BstHHI GCGC 7 cut(s) 46, 994, 1206, 1560, 2314, 2685, 2943
BstMAI GTCTC 7 cut(s) 694, 1014, 1483, 2529, 2578, 2783, 3480
BstNSI RCATGY 3 cut(s) 489, 2757, 4630
BstSFI CTRYAG 5 cut(s) 369, 1543, 2232, 3927, 4143
BstSLI GKGCMC 3 cut(s) 439, 1285, 4108
BstUI CGCG 4 cut(s) 44, 46, 949, 4317
BstV2I GAAGAC 4 cut(s) 824, 1455, 3248, 4680
BstX2I RGATCY 6 cut(s) 1097, 2128, 2563, 2928, 3599, 3931
BstXI CCANNNNNNTGG 1 cut(s) 245
BstYI RGATCY 6 cut(s) 1097, 2128, 2563, 2928, 3599, 3931
BstZ17I GTATAC 1 cut(s) 182
BsuI GTATCC 3 cut(s) 1952, 4243, 4718
BtgI CCRYGG 2 cut(s) 4195, 4408
BtrI CACGTC 1 cut(s) 40
BtsI GCAGTG 4 cut(s) 2229, 3360, 3442, 3824
BveI ACCTGC 4 cut(s) 883, 2472, 3221, 3724
Cac8I GCNNGC 9 cut(s) 487, 858, 2208, 2334, 2507, 3571, 3735, 4394, 4456
CaiI CAGNNNCTG 1 cut(s) 1109
CfoI GCGC 7 cut(s) 46, 994, 1206, 1560, 2314, 2685, 2943
Cfr10I RCCGGY 3 cut(s) 2322, 2730, 4392
CseI GACGC 4 cut(s) 1095, 2855, 4166, 4271
CsiI ACCWGGT 2 cut(s) 3745, 3903
Csp6I GTAC 5 cut(s) 249, 669, 1534, 2045, 3743
CspAI ACCGGT 2 cut(s) 2322, 2730
CviQI GTAC 5 cut(s) 249, 669, 1534, 2045, 3743
DraI TTTAAA 1 cut(s) 2667
EaeI YGGCCR 4 cut(s) 217, 2538, 4390, 4695
Eam1104I CTCTTC 5 cut(s) 810, 2418, 3271, 4380, 4482
EarI CTCTTC 5 cut(s) 810, 2418, 3271, 4380, 4482
EciI GGCGGA 2 cut(s) 939, 3664
Ecl136II GAGCTC 1 cut(s) 4570
Eco130I CCWWGG 5 cut(s) 2519, 2699, 3294, 4108, 4408
Eco24I GRGCYC 2 cut(s) 2403, 4572
Eco31I GGTCTC 3 cut(s) 694, 2529, 2783
Eco32I GATATC 2 cut(s) 175, 4327
Eco47I GGWCC 7 cut(s) 1688, 1841, 2591, 3005, 3607, 3767, 3987
Eco47III AGCGCT 1 cut(s) 993
Eco53kI GAGCTC 1 cut(s) 4570
Eco57I CTGAAG 6 cut(s) 732, 1366, 3252, 3408, 4364, 4382
Eco72I CACGTG 1 cut(s) 824
Eco88I CYCGRG 1 cut(s) 1836
EcoICRI GAGCTC 1 cut(s) 4570
EcoNI CCTNNNNNAGG 1 cut(s) 3744
EcoO109I RGGNCCY 5 cut(s) 97, 3005, 3607, 3987, 4835
EcoRI GAATTC 1 cut(s) 4120
EcoRV GATATC 2 cut(s) 175, 4327
EcoT14I CCWWGG 5 cut(s) 2519, 2699, 3294, 4108, 4408
EcoT22I ATGCAT 1 cut(s) 2755
EcoT38I GRGCYC 2 cut(s) 2403, 4572
ErhI CCWWGG 5 cut(s) 2519, 2699, 3294, 4108, 4408
FaqI GGGAC 3 cut(s) 192, 430, 1674
FauI CCCGC 1 cut(s) 3235
FauNDI CATATG 1 cut(s) 1194
FbaI TGATCA 1 cut(s) 3139
FblI GTMKAC 1 cut(s) 181
FriOI GRGCYC 2 cut(s) 2403, 4572
FspBI CTAG 8 cut(s) 705, 1050, 2132, 2688, 3306, 4298, 4416, 4451
GlaI GCGC 7 cut(s) 45, 993, 1205, 1559, 2313, 2684, 2942
GsaI CCCAGC 1 cut(s) 3579
GsuI CTGGAG 7 cut(s) 47, 633, 1388, 1488, 1752, 3621, 4248
HaeII RGCGCY 1 cut(s) 995
HapII CCGG 5 cut(s) 2323, 2731, 2737, 4393, 4832
HgaI GACGC 4 cut(s) 1095, 2855, 4166, 4271
HhaI GCGC 7 cut(s) 46, 994, 1206, 1560, 2314, 2685, 2943
Hin1I GRCGYC 1 cut(s) 2866
Hin6I GCGC 7 cut(s) 44, 992, 1204, 1558, 2312, 2683, 2941
HinP1I GCGC 7 cut(s) 44, 992, 1204, 1558, 2312, 2683, 2941
HincII GTYRAC 4 cut(s) 147, 1902, 4624, 4716
HindII GTYRAC 4 cut(s) 147, 1902, 4624, 4716
HindIII AAGCTT 5 cut(s) 599, 1124, 2456, 3216, 4284
HpaII CCGG 5 cut(s) 2323, 2731, 2737, 4393, 4832
HphI GGTGA 9 cut(s) 291, 620, 668, 1355, 3100, 3248, 3569, 3695, 4152
Hpy99I CGWCG 5 cut(s) 16, 44, 107, 113, 134
HpyCH4IV ACGT 2 cut(s) 39, 823
HpySE526I ACGT 2 cut(s) 39, 823
Hsp92I GRCGYC 1 cut(s) 2866
HspAI GCGC 7 cut(s) 44, 992, 1204, 1558, 2312, 2683, 2941
KroI GCCGGC 1 cut(s) 4392
KroNI GCCGGC 1 cut(s) 4394
Ksp22I TGATCA 1 cut(s) 3139
MabI ACCWGGT 2 cut(s) 3745, 3903
MaeI CTAG 8 cut(s) 705, 1050, 2132, 2688, 3306, 4298, 4416, 4451
MaeII ACGT 2 cut(s) 39, 823
MaeIII GTNAC 8 cut(s) 403, 774, 781, 787, 3271, 3468, 4369, 4736
MbiI CCGCTC 1 cut(s) 4208
MfeI CAATTG 3 cut(s) 882, 1067, 3495
MflI RGATCY 6 cut(s) 1097, 2128, 2563, 2928, 3599, 3931
MhlI GDGCHC 7 cut(s) 53, 439, 1285, 2403, 4108, 4354, 4572
MlsI TGGCCA 2 cut(s) 219, 2540
MluNI TGGCCA 2 cut(s) 219, 2540
MlyI GAGTC 5 cut(s) 1907, 2950, 3257, 4045, 4413
MmeI TCCRAC 4 cut(s) 294, 388, 2735, 4674
Mox20I TGGCCA 2 cut(s) 219, 2540
Mph1103I ATGCAT 1 cut(s) 2755
MroNI GCCGGC 1 cut(s) 4392
MroXI GAANNNNTTC 4 cut(s) 1882, 2412, 3545, 4287
MscI TGGCCA 2 cut(s) 219, 2540
MslI CAYNNNNRTG 6 cut(s) 243, 558, 640, 1007, 2194, 3147
Msp20I TGGCCA 2 cut(s) 219, 2540
MspA1I CMGCKG 2 cut(s) 3422, 3764
MspCI CTTAAG 2 cut(s) 2048, 2932
MspI CCGG 5 cut(s) 2323, 2731, 2737, 4393, 4832
MunI CAATTG 3 cut(s) 882, 1067, 3495
Mva1269I GAATGC 2 cut(s) 295, 4113
MvnI CGCG 4 cut(s) 44, 46, 949, 4317
NaeI GCCGGC 1 cut(s) 4394
NciI CCSGG 1 cut(s) 4833
NcoI CCATGG 1 cut(s) 4408
NdeI CATATG 1 cut(s) 1194
NgoMIV GCCGGC 1 cut(s) 4392
NmeAIII GCCGAG 2 cut(s) 1273, 3109
NmuCI GTSAC 3 cut(s) 3271, 4369, 4736
NsiI ATGCAT 1 cut(s) 2755
NspI RCATGY 3 cut(s) 489, 2757, 4630
NspV TTCGAA 1 cut(s) 4507
PaeI GCATGC 1 cut(s) 489
PaqCI CACCTGC 1 cut(s) 3221
PciI ACATGT 1 cut(s) 4626
PctI GAATGC 2 cut(s) 295, 4113
PdiI GCCGGC 1 cut(s) 4394
PdmI GAANNNNTTC 4 cut(s) 1882, 2412, 3545, 4287
PfoI TCCNGGA 2 cut(s) 3835, 4180
PinAI ACCGGT 2 cut(s) 2322, 2730
PleI GAGTC 5 cut(s) 1906, 2950, 3257, 4045, 4412
PmaCI CACGTG 1 cut(s) 824
PmlI CACGTG 1 cut(s) 824
PpsI GAGTC 5 cut(s) 1906, 2950, 3257, 4045, 4412
Ppu21I YACGTR 1 cut(s) 824
PpuMI RGGWCCY 3 cut(s) 3005, 3607, 3987
PscI ACATGT 1 cut(s) 4626
PshBI ATTAAT 1 cut(s) 834
PsiI TTATAA 1 cut(s) 830
Psp124BI GAGCTC 1 cut(s) 4572
Psp5II RGGWCCY 3 cut(s) 3005, 3607, 3987
PspCI CACGTG 1 cut(s) 824
PspFI CCCAGC 1 cut(s) 3575
PspPPI RGGWCCY 3 cut(s) 3005, 3607, 3987
PsrI GAACNNNNNNTAC 2 cut(s) 2037, 2069
PstI CTGCAG 1 cut(s) 2236
PstNI CAGNNNCTG 1 cut(s) 1109
PsuI RGATCY 6 cut(s) 1097, 2128, 2563, 2928, 3599, 3931
PvuII CAGCTG 2 cut(s) 3422, 3764
RsaI GTAC 5 cut(s) 250, 670, 1535, 2046, 3744
RsaNI GTAC 5 cut(s) 249, 669, 1534, 2045, 3743
RseI CAYNNNNRTG 6 cut(s) 243, 558, 640, 1007, 2194, 3147
SacI GAGCTC 1 cut(s) 4572
SchI GAGTC 5 cut(s) 1907, 2950, 3257, 4045, 4413
SduI GDGCHC 7 cut(s) 53, 439, 1285, 2403, 4108, 4354, 4572
SexAI ACCWGGT 2 cut(s) 3745, 3903
SfcI CTRYAG 5 cut(s) 369, 1543, 2232, 3927, 4143
SfuI TTCGAA 1 cut(s) 4507
SinI GGWCC 7 cut(s) 1688, 1841, 2591, 3005, 3607, 3767, 3987
SmiMI CAYNNNNRTG 6 cut(s) 243, 558, 640, 1007, 2194, 3147
SmlI CTYRAG 7 cut(s) 2048, 2583, 2932, 2958, 3957, 4241, 4565
SmoI CTYRAG 7 cut(s) 2048, 2583, 2932, 2958, 3957, 4241, 4565
SphI GCATGC 1 cut(s) 489
SspI AATATT 3 cut(s) 1152, 1881, 2094
SspMI CTAG 8 cut(s) 705, 1050, 2132, 2688, 3306, 4298, 4416, 4451
SstI GAGCTC 1 cut(s) 4572
StyI CCWWGG 5 cut(s) 2519, 2699, 3294, 4108, 4408
TaiI ACGT 2 cut(s) 42, 826
TaqI TCGA 9 cut(s) 27, 132, 538, 585, 1669, 1876, 2826, 4278, 4507
TatI WGTACW 1 cut(s) 2044
TauI GCSGC 7 cut(s) 77, 80, 1043, 2866, 3368, 4208, 4697
TseFI GTSAC 3 cut(s) 3271, 4369, 4736
Tsp45I GTSAC 3 cut(s) 3271, 4369, 4736
TspGWI ACGGA 1 cut(s) 3905
Vha464I CTTAAG 2 cut(s) 2048, 2932
VpaK11BI GGWCC 7 cut(s) 1688, 1841, 2591, 3005, 3607, 3767, 3987
VspI ATTAAT 1 cut(s) 834
XagI CCTNNNNNAGG 1 cut(s) 3744
XapI RAATTY 9 cut(s) 862, 982, 1375, 1580, 2159, 2675, 3395, 4120, 4754
XbaI TCTAGA 2 cut(s) 2131, 2687
XceI RCATGY 3 cut(s) 489, 2757, 4630
XcmI CCANNNNNNNNNTGG 2 cut(s) 639, 982
XmiI GTMKAC 1 cut(s) 181
XmnI GAANNNNTTC 4 cut(s) 1882, 2412, 3545, 4287
XspI CTAG 8 cut(s) 705, 1050, 2132, 2688, 3306, 4298, 4416, 4451
Zsp2I ATGCAT 1 cut(s) 2755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.