Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003787

Physical Location & Seq

Genomic Coordinates Forward (+)

21259421 .. 21264384

Gene Structure 4964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G017240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCCAGGCTTAAGGAGTACACGGCCGAGGAGATCGTATTGGCTACTGATAATTTTTCTTGGCGGTTGAGATCAGAGTCTGTAGGAATTTGGGGCACTGTTTATAAAGGCTATGTTGACGATGCAGCAATTTCCATCAAATTCCTCACCTCCCCCGAGGAACGTGTTTTTAACTCTATGGTTAAGTCCCTCCGACTAATTAGACACCCTCACCTTCTTTCAATGTTGGGCTTCTGCTCCGAGCTCAAGTGCTTTGTCTATGAACGTATAGAGTATAGTCGCGTGCTGCACGAGGTCGTCAAGCAAAACCTTCATTGGCACGATCGCATTCGTATTGCCAGTGATATTTGTTCGGCCTTGTCCTACATTATTAAGAGGGCTAGGTGTGAACCTATTGTTCCTGACTATCTCAATGCATCCAACATTCTTGTCGATCGCCACGTTAATGCCAAAATCAATGTTGTACTGAAAAGATGCGACAAGCCTGATCTTGCATGGGATGTAAAGACTTTTGGCTATCTGGTTCTGAATCTCTTAACTGGCATTCCCGGAAATTGTTTTTCTTACTGTTATGTTAGATGGTTTGCCCCACGGTTTGGACAAGACGGCAGAGATGATTTTAGGAAAAAGTACATTATGGTGATAATAGTGAAAAAGATGAACGATATTAGAGAAAAGGCTGATGAAATGGTCAGAGGACGTGCAGGAACATATGATCTAGTTACCAGTGGTAGAGATCAGGACTCTGATATTCCAACACAATTCTACTGCCCCATATATAAGGAAGTAATGAAGGATCCACATGTGGCTGCTGATGGATTTTCCTATGAGCGAGAAGGCATAGAGAAATGGCTCCAAACCGGGCACGACACATCACCAATGACCAATTTGAAGCTCAAGAATAAAATTCTTACCCCTAATGGTACCCTTAAGCTTCTGATCAAAGACTGGTATCGTGAAAGATCAATTCCTTATCCAAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr U-box

Protein Analysis

328

Amino Acids

38.18

Weight (kDa)

8.94

Isoelectric Point (pI)

27.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	29 - 152	6.9e-09	Protein tyrosine and serine/threonine kinase
U-box	PF04564	251 - 322	7e-18	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01670 AT1G01670 AT1G01670 AT1G01680
fragaria_vesca	FvH4_1g19560 FvH4_1g19563
malus_domestica	MD07G1249800.v1.1
pyrus_communis	pycom01g09160
rosa_chinensis	RchiOBHm_Chr2g0111071 RchiOBHm_Chr2g0111091 RchiOBHm_Chr2g0111101
rosa_laevigata	RLG00000017863 RLG00000017864
rosa_multiflora	Rmu_co8348129.1_g000001 Rmu_sc0012949.1_g000001 Rmu_sc0018570.1_g000001 Rmu_sc0019445.1_g000002 Rmu_sc0036074.1_g000001 Rmu_sc0040262.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132710
rosa_rugosa	Rorug02G0170900
rosa_samantha	Rh2AG223400 Rh2AG223600 Rh2AG223700 Rh2AG223800 Rh2BG235300 Rh2BG235400 Rh2CG226800 Rh2CG226900 Rh2DG231100 Rh2DG231300 Rh2DG231400
rosa_wichuraiana	Rw2G017240 Rw2G017260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
Acc65I	GGTACC	1 cut(s)	923
AccB1I	GGYRCC	1 cut(s)	923
AccB7I	CCANNNNNTGG	1 cut(s)	596
AccII	CGCG	1 cut(s)	282
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	2 cut(s)	791, 804
AcoI	YGGCCR	2 cut(s)	3, 24
AcsI	RAATTY	3 cut(s)	87, 140, 906
AfaI	GTAC	4 cut(s)	20, 465, 632, 925
AfiI	CCNNNNNNNGG	1 cut(s)	596
AflII	CTTAAG	2 cut(s)	11, 929
AflIII	ACRYGT	2 cut(s)	163, 802
AgsI	TTSAA	2 cut(s)	222, 892
AjiI	CACGTC	1 cut(s)	701
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	3 cut(s)	244, 895, 934
AluI	AGCT	3 cut(s)	244, 895, 934
Alw21I	GWGCWC	1 cut(s)	246
AlwI	GGATC	2 cut(s)	791, 804
AlwNI	CAGNNNCTG	1 cut(s)	80
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	3 cut(s)	3, 24, 354
ApeKI	GCWGC	3 cut(s)	125, 286, 809
ApoI	RAATTY	3 cut(s)	87, 140, 906
Asp718I	GGTACC	1 cut(s)	923
AsuC2I	CCSGG	2 cut(s)	549, 862
AsuHPI	GGTGA	4 cut(s)	139, 203, 652, 867
AvaI	CYCGRG	1 cut(s)	155
BaeGI	GKGCMC	2 cut(s)	98, 867
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	796
BanI	GGYRCC	1 cut(s)	923
BanII	GRGCYC	1 cut(s)	246
BauI	CACGAG	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	3 cut(s)	137, 273, 796
BccI	CCATC	3 cut(s)	143, 573, 809
BceAI	ACGGC	2 cut(s)	39, 622
BciT130I	CCWGG	1 cut(s)	7
BclI	TGATCA	1 cut(s)	939
BcnI	CCSGG	2 cut(s)	549, 862
BfaI	CTAG	2 cut(s)	381, 719
BfmI	CTRYAG	1 cut(s)	81
BfrI	CTTAAG	2 cut(s)	11, 929
BisI	GCNGC	3 cut(s)	126, 287, 810
BlsI	GCNGC	3 cut(s)	127, 288, 811
Bme1390I	CCNGG	3 cut(s)	7, 549, 862
BmeT110I	CYCGRG	1 cut(s)	155
BmgBI	CACGTC	1 cut(s)	701
BmiI	GGNNCC	3 cut(s)	798, 854, 925
BmrFI	CCNGG	3 cut(s)	7, 549, 862
BmsI	GCATC	3 cut(s)	112, 425, 464
BpuEI	CTTGAG	2 cut(s)	230, 881
BpuMI	CCSGG	2 cut(s)	549, 862
BsaJI	CCNNGG	3 cut(s)	27, 156, 590
Bsc4I	CCNNNNNNNGG	1 cut(s)	596
Bse1I	ACTGG	4 cut(s)	339, 544, 726, 953
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	3 cut(s)	27, 156, 590
BseGI	GGATG	2 cut(s)	416, 505
BseLI	CCNNNNNNNGG	1 cut(s)	596
BseNI	ACTGG	4 cut(s)	339, 544, 726, 953
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	2 cut(s)	98, 867
BseX3I	CGGCCG	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	137, 273, 796
BsgI	GTGCAG	2 cut(s)	272, 723
Bsh1236I	CGCG	1 cut(s)	282
Bsh1285I	CGRYCG	3 cut(s)	27, 325, 436
BshFI	GGCC	3 cut(s)	5, 26, 356
BshNI	GGYRCC	1 cut(s)	923
BsiEI	CGRYCG	3 cut(s)	27, 325, 436
BsiHKAI	GWGCWC	1 cut(s)	246
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	549, 861
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	596
BsmFI	GGGAC	1 cut(s)	172
BsmI	GAATGC	2 cut(s)	327, 543
BsnI	GGCC	3 cut(s)	5, 26, 356
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	3 cut(s)	98, 246, 867
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	3 cut(s)	5, 26, 356
BspFNI	CGCG	1 cut(s)	282
BspLI	GGNNCC	3 cut(s)	798, 854, 925
BspPI	GGATC	2 cut(s)	791, 804
BspT107I	GGYRCC	1 cut(s)	923
BspTI	CTTAAG	2 cut(s)	11, 929
BsrI	ACTGG	4 cut(s)	339, 544, 726, 953
BssECI	CCNNGG	3 cut(s)	27, 156, 590
BssSI	CACGAG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	290
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	3 cut(s)	100, 569, 594
BstAFI	CTTAAG	2 cut(s)	11, 929
BstC8I	GCNNGC	1 cut(s)	284
BstDSI	CCRYGG	1 cut(s)	590
BstF5I	GGATG	2 cut(s)	416, 505
BstFNI	CGCG	1 cut(s)	282
BstMCI	CGRYCG	3 cut(s)	27, 325, 436
BstNI	CCWGG	1 cut(s)	7
BstNSI	RCATGY	1 cut(s)	806
BstSCI	CCNGG	3 cut(s)	5, 547, 860
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	2 cut(s)	98, 867
BstUI	CGCG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	137, 273, 796
BstX2I	RGATCY	1 cut(s)	796
BstYI	RGATCY	1 cut(s)	796
BstZI	CGGCCG	1 cut(s)	24
BsuRI	GGCC	3 cut(s)	5, 26, 356
BtgI	CCRYGG	1 cut(s)	590
BtrI	CACGTC	1 cut(s)	701
BtsCI	GGATG	2 cut(s)	416, 505
BtsIMutI	CAGTG	3 cut(s)	96, 346, 733
Cac8I	GCNNGC	1 cut(s)	284
CaiI	CAGNNNCTG	1 cut(s)	80
Csp6I	GTAC	4 cut(s)	19, 464, 631, 924
CviAII	CATG	2 cut(s)	495, 803
CviQI	GTAC	4 cut(s)	19, 464, 631, 924
EaeI	YGGCCR	2 cut(s)	3, 24
EagI	CGGCCG	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	244
EclXI	CGGCCG	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	246
Eco52I	CGGCCG	1 cut(s)	24
Eco53kI	GAGCTC	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	5
EcoT22I	ATGCAT	1 cut(s)	418
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	2 cut(s)	498, 806
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	2 cut(s)	494, 802
FauNDI	CATATG	1 cut(s)	712
FbaI	TGATCA	1 cut(s)	939
Fnu4HI	GCNGC	3 cut(s)	126, 287, 810
FokI	GGATG	2 cut(s)	403, 512
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	3 cut(s)	126, 287, 810
FspBI	CTAG	2 cut(s)	381, 719
GluI	GCNGC	3 cut(s)	126, 287, 810
HaeIII	GGCC	3 cut(s)	5, 26, 356
HapII	CCGG	2 cut(s)	549, 861
Hin1II	CATG	2 cut(s)	498, 806
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HindIII	AAGCTT	1 cut(s)	932
HinfI	GANTC	3 cut(s)	77, 529, 743
HpaII	CCGG	2 cut(s)	549, 861
HphI	GGTGA	4 cut(s)	139, 203, 652, 867
Hpy166II	GTNNAC	3 cut(s)	21, 118, 389
Hpy188I	TCNGA	7 cut(s)	76, 194, 241, 528, 695, 748, 939
Hpy188III	TCNNGA	4 cut(s)	401, 740, 898, 956
Hpy8I	GTNNAC	3 cut(s)	21, 118, 389
HpyAV	CCTTC	4 cut(s)	224, 320, 787, 830
HpyCH4III	ACNGT	3 cut(s)	100, 569, 594
HpyCH4IV	ACGT	4 cut(s)	163, 265, 441, 700
HpyCH4V	TGCA	5 cut(s)	125, 289, 416, 494, 704
HpySE526I	ACGT	4 cut(s)	163, 265, 441, 700
Hsp92II	CATG	2 cut(s)	498, 806
KpnI	GGTACC	1 cut(s)	927
Ksp22I	TGATCA	1 cut(s)	939
LmnI	GCTCC	2 cut(s)	242, 858
Lsp1109I	GCAGC	3 cut(s)	137, 273, 796
LweI	GCATC	3 cut(s)	112, 425, 464
MaeI	CTAG	2 cut(s)	381, 719
MaeII	ACGT	4 cut(s)	163, 265, 441, 700
MaeIII	GTNAC	1 cut(s)	721
MflI	RGATCY	1 cut(s)	796
MhlI	GDGCHC	3 cut(s)	98, 246, 867
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	86, 737
MmeI	TCCRAC	3 cut(s)	217, 444, 779
MnlI	CCTC	9 cut(s)	22, 151, 155, 160, 200, 219, 286, 369, 689
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	418
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	7 cut(s)	12, 171, 183, 372, 444, 536, 930
MslI	CAYNNNNRTG	2 cut(s)	444, 638
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	2 cut(s)	11, 929
MspI	CCGG	2 cut(s)	549, 861
MspR9I	CCNGG	3 cut(s)	7, 549, 862
Mva1269I	GAATGC	2 cut(s)	327, 543
MvaI	CCWGG	1 cut(s)	7
MvnI	CGCG	1 cut(s)	282
NciI	CCSGG	2 cut(s)	549, 862
NdeI	CATATG	1 cut(s)	712
NlaIII	CATG	2 cut(s)	498, 806
NlaIV	GGNNCC	3 cut(s)	798, 854, 925
NmeAIII	GCCGAG	1 cut(s)	52
NsiI	ATGCAT	1 cut(s)	418
NspI	RCATGY	1 cut(s)	806
PciI	ACATGT	1 cut(s)	802
PcsI	WCGNNNNNNNCGW	1 cut(s)	438
PctI	GAATGC	2 cut(s)	327, 543
PfeI	GAWTC	1 cut(s)	529
PflMI	CCANNNNNTGG	1 cut(s)	596
PfoI	TCCNGGA	1 cut(s)	547
PkrI	GCNGC	3 cut(s)	127, 288, 811
Ple19I	CGATCG	2 cut(s)	325, 436
PleI	GAGTC	2 cut(s)	85, 737
PpsI	GAGTC	2 cut(s)	85, 737
PscI	ACATGT	1 cut(s)	802
PsiI	TTATAA	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	246
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	3 cut(s)	798, 854, 925
PstNI	CAGNNNCTG	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	796
PvuI	CGATCG	2 cut(s)	325, 436
RsaI	GTAC	4 cut(s)	20, 465, 632, 925
RsaNI	GTAC	4 cut(s)	19, 464, 631, 924
RseI	CAYNNNNRTG	2 cut(s)	444, 638
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	7 cut(s)	12, 171, 183, 372, 444, 536, 930
SatI	GCNGC	3 cut(s)	126, 287, 810
SchI	GAGTC	2 cut(s)	86, 737
ScrFI	CCNGG	3 cut(s)	7, 549, 862
SduI	GDGCHC	3 cut(s)	98, 246, 867
SfaNI	GCATC	3 cut(s)	112, 425, 464
SfcI	CTRYAG	1 cut(s)	81
SmiMI	CAYNNNNRTG	2 cut(s)	444, 638
SmlI	CTYRAG	4 cut(s)	11, 245, 896, 929
SmoI	CTYRAG	4 cut(s)	11, 245, 896, 929
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	2 cut(s)	381, 719
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	3 cut(s)	5, 547, 860
TaaI	ACNGT	3 cut(s)	100, 569, 594
TaiI	ACGT	4 cut(s)	166, 268, 444, 703
TaqI	TCGA	1 cut(s)	432
TatI	WGTACW	3 cut(s)	18, 463, 630
TfiI	GAWTC	1 cut(s)	529
Tru1I	TTAA	7 cut(s)	12, 171, 183, 372, 444, 536, 930
Tru9I	TTAA	7 cut(s)	12, 171, 183, 372, 444, 536, 930
TscAI	CASTG	3 cut(s)	103, 346, 733
TseI	GCWGC	3 cut(s)	125, 286, 809
TspDTI	ATGAA	5 cut(s)	276, 302, 674, 699, 806
TspRI	CASTG	3 cut(s)	103, 346, 733
Van91I	CCANNNNNTGG	1 cut(s)	596
Vha464I	CTTAAG	2 cut(s)	11, 929
XapI	RAATTY	3 cut(s)	87, 140, 906
XceI	RCATGY	1 cut(s)	806
XspI	CTAG	2 cut(s)	381, 719
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.