Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8348129.1

Orthogroup ID

OG0003787

Physical Location & Seq

Genomic Coordinates Forward (+)

219 .. 1032

Gene Structure 814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8348129.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atggaatacacggccgaggagataaaacttgctactgataatttttctcggcggttgagatttggctctcaaggcgtttggagctgcgtttatataggccgtctgaaacatgacaaagttgcaatcaaattcctcattggtaaccaagaagatcacttcaaacatatggtcaagtccctcagcaagcttagacaccctaatcttcttcgcatgaagggcttctgctccgagttgaagtgctttgtatataaatacatggaaaaatgtagcctgcaggacgttttactatcctccaatgagaattctaaaaacaaaacgatcccgtggcacgatcgaattcgaattgccacagaagtttgctcggttgtgtgctaccttcacgaggccagttgtgtgctaggtcaacgccacctctgcccatccaacatcctcattgatcgcaacctcgtcgccaagctggattttgttgagcaaaagtacgacggtaaatgcaattttgaaggggatgtaaaggcttttgggaaggtgattttgagtctcttgactgcgactgggggagatctttgtctctctgatctctttgctgtactggataagagggctggtcgatggccaatggatttggcagagaaacttctgaagttgtct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr U-box

Protein Analysis

216

Amino Acids

24.71

Weight (kDa)

8.96

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01670 AT1G01670 AT1G01670 AT1G01680
fragaria_vesca	FvH4_1g19560 FvH4_1g19563
malus_domestica	MD07G1249800.v1.1
pyrus_communis	pycom01g09160
rosa_chinensis	RchiOBHm_Chr2g0111071 RchiOBHm_Chr2g0111091 RchiOBHm_Chr2g0111101
rosa_laevigata	RLG00000017863 RLG00000017864
rosa_multiflora	Rmu_co8348129.1_g000001 Rmu_sc0012949.1_g000001 Rmu_sc0018570.1_g000001 Rmu_sc0019445.1_g000002 Rmu_sc0036074.1_g000001 Rmu_sc0040262.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132710
rosa_rugosa	Rorug02G0170900
rosa_samantha	Rh2AG223400 Rh2AG223600 Rh2AG223700 Rh2AG223800 Rh2BG235300 Rh2BG235400 Rh2CG226800 Rh2CG226900 Rh2DG231100 Rh2DG231300 Rh2DG231400
rosa_wichuraiana	Rw2G017240 Rw2G017260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	52
AclWI	GGATC	1 cut(s)	313
AcoI	YGGCCR	2 cut(s)	12, 611
AcsI	RAATTY	3 cut(s)	128, 301, 336
AfaI	GTAC	2 cut(s)	479, 588
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	3 cut(s)	160, 235, 500
AluBI	AGCT	3 cut(s)	84, 187, 457
AluI	AGCT	3 cut(s)	84, 187, 457
Alw26I	GTCTC	2 cut(s)	542, 572
AlwI	GGATC	1 cut(s)	313
AoxI	GGCC	4 cut(s)	12, 97, 384, 611
ApeKI	GCWGC	1 cut(s)	84
ApoI	RAATTY	3 cut(s)	128, 301, 336
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
Asp700I	GAANNNNTTC	1 cut(s)	218
AsuHPI	GGTGA	1 cut(s)	538
AsuII	TTCGAA	1 cut(s)	340
BalI	TGGCCA	1 cut(s)	613
BauI	CACGAG	1 cut(s)	380
BbvCI	CCTCAGC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	2 cut(s)	427, 603
BceAI	ACGGC	2 cut(s)	27, 84
BcgI	CGANNNNNNTGC	2 cut(s)	430, 464
BcoDI	GTCTC	2 cut(s)	542, 572
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	272
BglII	AGATCT	1 cut(s)	559
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
BmrI	ACTGGG	1 cut(s)	561
BmuI	ACTGGG	1 cut(s)	561
Bpu10I	CCTNAGC	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	54
BsaJI	CCNNGG	2 cut(s)	15, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse1I	ACTGG	3 cut(s)	387, 556, 594
BseDI	CCNNGG	2 cut(s)	15, 323
BseGI	GGATG	3 cut(s)	419, 426, 511
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	193
BseNI	ACTGG	3 cut(s)	387, 556, 594
BseRI	GAGGAG	1 cut(s)	32
BseX3I	CGGCCG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	71
Bsh1285I	CGRYCG	2 cut(s)	15, 334
BshFI	GGCC	4 cut(s)	14, 99, 386, 613
BsiEI	CGRYCG	2 cut(s)	15, 334
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	2 cut(s)	542, 572
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	4 cut(s)	14, 99, 386, 613
Bsp119I	TTCGAA	1 cut(s)	340
Bsp143I	GATC	6 cut(s)	151, 318, 331, 436, 559, 574
BspACI	CCGC	1 cut(s)	52
BspANI	GGCC	4 cut(s)	14, 99, 386, 613
BspCNI	CTCAG	1 cut(s)	192
BspMAI	CTGCAG	1 cut(s)	276
BspPI	GGATC	1 cut(s)	313
BspT104I	TTCGAA	1 cut(s)	340
BsrI	ACTGG	3 cut(s)	387, 556, 594
BssECI	CCNNGG	2 cut(s)	15, 323
BssMI	GATC	6 cut(s)	151, 318, 331, 436, 559, 574
BssSI	CACGAG	1 cut(s)	380
Bst2BI	CACGAG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	485
BstBI	TTCGAA	1 cut(s)	340
BstC8I	GCNNGC	2 cut(s)	185, 272
BstDEI	CTNAG	2 cut(s)	179, 188
BstDSI	CCRYGG	1 cut(s)	323
BstEII	GGTNACC	1 cut(s)	140
BstENI	CCTNNNNNAGG	1 cut(s)	380
BstF5I	GGATG	3 cut(s)	419, 426, 511
BstKTI	GATC	6 cut(s)	154, 321, 334, 439, 562, 577
BstMAI	GTCTC	2 cut(s)	542, 572
BstMBI	GATC	6 cut(s)	151, 318, 331, 436, 559, 574
BstMCI	CGRYCG	2 cut(s)	15, 334
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 81, 216, 414
BstPI	GGTNACC	1 cut(s)	140
BstSFI	CTRYAG	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	71
BstX2I	RGATCY	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	559
BstZI	CGGCCG	1 cut(s)	12
BsuRI	GGCC	4 cut(s)	14, 99, 386, 613
BtgI	CCRYGG	1 cut(s)	323
BtsCI	GGATG	3 cut(s)	419, 426, 511
Cac8I	GCNNGC	2 cut(s)	185, 272
Csp6I	GTAC	2 cut(s)	478, 587
CviAII	CATG	3 cut(s)	110, 211, 256
CviQI	GTAC	2 cut(s)	478, 587
DdeI	CTNAG	2 cut(s)	179, 188
DpnI	GATC	6 cut(s)	153, 320, 333, 438, 561, 576
DpnII	GATC	6 cut(s)	151, 318, 331, 436, 559, 574
EaeI	YGGCCR	2 cut(s)	12, 611
EagI	CGGCCG	1 cut(s)	12
EclXI	CGGCCG	1 cut(s)	12
Eco52I	CGGCCG	1 cut(s)	12
Eco91I	GGTNACC	1 cut(s)	140
EcoNI	CCTNNNNNAGG	1 cut(s)	380
EcoO65I	GGTNACC	1 cut(s)	140
EcoRI	GAATTC	2 cut(s)	301, 336
FaeI	CATG	3 cut(s)	113, 214, 259
FaiI	YATR	9 cut(s)	93, 95, 111, 165, 167, 212, 247, 249, 257
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	3 cut(s)	109, 210, 255
FauNDI	CATATG	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	3 cut(s)	406, 413, 518
Fsp4HI	GCNGC	1 cut(s)	85
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	1 cut(s)	85
HaeIII	GGCC	4 cut(s)	14, 99, 386, 613
Hin1II	CATG	3 cut(s)	113, 214, 259
HincII	GTYRAC	1 cut(s)	404
HindII	GTYRAC	1 cut(s)	404
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	1 cut(s)	535
HphI	GGTGA	1 cut(s)	538
Hpy166II	GTNNAC	1 cut(s)	404
Hpy188I	TCNGA	4 cut(s)	105, 229, 574, 639
Hpy188III	TCNNGA	2 cut(s)	380, 541
Hpy8I	GTNNAC	1 cut(s)	404
Hpy99I	CGWCG	2 cut(s)	452, 485
HpyAV	CCTTC	4 cut(s)	208, 386, 494, 517
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	3 cut(s)	122, 274, 492
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 81, 216, 414
HpyF3I	CTNAG	2 cut(s)	179, 188
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	113, 214, 259
Kzo9I	GATC	6 cut(s)	151, 318, 331, 436, 559, 574
LmnI	GCTCC	2 cut(s)	81, 230
LpnPI	CCDG	7 cut(s)	260, 284, 400, 443, 537, 575, 588
Lsp1109I	GCAGC	1 cut(s)	71
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	6 cut(s)	153, 320, 333, 438, 561, 576
MboI	GATC	6 cut(s)	151, 318, 331, 436, 559, 574
MboII	GAAGA	3 cut(s)	161, 194, 197
MflI	RGATCY	1 cut(s)	559
MlsI	TGGCCA	1 cut(s)	613
MluCI	AATT	6 cut(s)	40, 128, 301, 336, 342, 493
MluNI	TGGCCA	1 cut(s)	613
MlyI	GAGTC	1 cut(s)	544
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	9 cut(s)	10, 143, 188, 301, 376, 422, 440, 455, 591
Mox20I	TGGCCA	1 cut(s)	613
MroXI	GAANNNNTTC	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	613
Msp20I	TGGCCA	1 cut(s)	613
MwoI	GCNNNNNNNGC	4 cut(s)	72, 81, 216, 414
NdeI	CATATG	1 cut(s)	165
NdeII	GATC	6 cut(s)	151, 318, 331, 436, 559, 574
NlaIII	CATG	3 cut(s)	113, 214, 259
NmeAIII	GCCGAG	2 cut(s)	28, 40
NspV	TTCGAA	1 cut(s)	340
PdmI	GAANNNNTTC	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	86
Ple19I	CGATCG	1 cut(s)	334
PleI	GAGTC	1 cut(s)	543
PpsI	GAGTC	1 cut(s)	543
PspEI	GGTNACC	1 cut(s)	140
PstI	CTGCAG	1 cut(s)	276
PsuI	RGATCY	1 cut(s)	559
PvuI	CGATCG	1 cut(s)	334
RsaI	GTAC	2 cut(s)	479, 588
RsaNI	GTAC	2 cut(s)	478, 587
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	6 cut(s)	151, 318, 331, 436, 559, 574
SbfI	CCTGCAGG	1 cut(s)	276
SchI	GAGTC	1 cut(s)	544
SdaI	CCTGCAGG	1 cut(s)	276
SetI	ASST	9 cut(s)	86, 189, 282, 378, 403, 414, 447, 459, 528
SfcI	CTRYAG	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	340
SmlI	CTYRAG	1 cut(s)	69
SmoI	CTYRAG	1 cut(s)	69
Sse8387I	CCTGCAGG	1 cut(s)	276
Sse9I	AATT	6 cut(s)	40, 128, 301, 336, 342, 493
SsiI	CCGC	1 cut(s)	52
SspMI	CTAG	1 cut(s)	398
TaaI	ACNGT	1 cut(s)	485
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	3 cut(s)	334, 340, 607
TasI	AATT	6 cut(s)	40, 128, 301, 336, 342, 493
TatI	WGTACW	1 cut(s)	586
TseI	GCWGC	1 cut(s)	84
TspDTI	ATGAA	1 cut(s)	227
XagI	CCTNNNNNAGG	1 cut(s)	380
XapI	RAATTY	3 cut(s)	128, 301, 336
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.