Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003787

Physical Location & Seq

Genomic Coordinates Forward (+)

23457049 .. 23458745

Gene Structure 1697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG235400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGAATACACGGCCGAGGAGATAAAACTTGCTACTGATAATTTTTCTCGGCGGTTGAGATTTGGCTCTCAAGGCGTTTGGAGCTGCGTTTATATAGGCCGTCTGAAACATGACAAAGTTGCAATCAAATTCCTCATTGGTAACCAAGAAGATCACTTCAAACATATGGTCAAGTCCCTCAGCAAGCTTAGACACCCTAATCTTCTTCGCATGAAGGGCTTCTGCTCCGAGTTGAAGTGCTTTGTATATAAATACATGGAAAAATGTAGCCTGCAGGACGTTTTACTATCCTCCAATGAGAATTCTAAAAACAAAACGATCCCGTGGCACGATCGAATTCGAATTGCCACAGAAGTTTGCTCGGTTGTGTGCTACCTTCACGAGGCCAGTTGTGTGCTAGGTCAACGCCACCTCTGCCCATCCAACATCCTCATTGACCGCAACCTCGTCGCCAAGGTGGATTTTGTTGAGCAAAAGTACGACGGTAAATGCAATTTTGAAGGGGATGTAAAGGCTTTTGGGAAGGTGATTTTGAGTCTCTTGACTGCGACTGGGGGAGATCTTTGTCTCTCTGATCTCTTTGCTGTACTGGATAAGAGGGCTGGTCGATGGCCAATGGATTTGGCAGAGAAACTTCTGAAGTTGTCCGAAACTTGTAATTCCTTTAAACCTAGCGATTATAAGGACTCTTCGTATATGCTCAAAGTAAGGGAAGAGCTTAATGAAATTAGAGAAAATGCTGATGATATAATCAGACAGCGGTCAAGGACATATGAAACGTTTTGTGGTGGTGCTTATGTAGAGGATTCCAACATCCCAAATGCTTTCGTCTGCCCAATATTTAAGGAAGTAATGAAGGATCCACATGTGGCGGCTGACGGATTTTCTTATGAGCGAAAAGCCATAGCGAAATGGTTGAAATTGGGAAGTTATAGGTCACCAATGACAAATTTAGTGCTTGAGCATAAAGTTCTTAGGCCCAATCACACCCTTCTGTTTCTCATCCAAGATTGGCAAAGTGCAAATTCATCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr U-box

Protein Analysis

345

Amino Acids

39.6

Weight (kDa)

8.67

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	24 - 153	2.2e-15	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	24 - 152	3.1e-09	Protein kinase domain
U-box	PF04564	272 - 343	8e-16	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01670 AT1G01670 AT1G01670 AT1G01680
fragaria_vesca	FvH4_1g19560 FvH4_1g19563
malus_domestica	MD07G1249800.v1.1
pyrus_communis	pycom01g09160
rosa_chinensis	RchiOBHm_Chr2g0111071 RchiOBHm_Chr2g0111091 RchiOBHm_Chr2g0111101
rosa_laevigata	RLG00000017863 RLG00000017864
rosa_multiflora	Rmu_co8348129.1_g000001 Rmu_sc0012949.1_g000001 Rmu_sc0018570.1_g000001 Rmu_sc0019445.1_g000002 Rmu_sc0036074.1_g000001 Rmu_sc0040262.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132710
rosa_rugosa	Rorug02G0170900
rosa_samantha	Rh2AG223400 Rh2AG223600 Rh2AG223700 Rh2AG223800 Rh2BG235300 Rh2BG235400 Rh2CG226800 Rh2CG226900 Rh2DG231100 Rh2DG231300 Rh2DG231400
rosa_wichuraiana	Rw2G017240 Rw2G017260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	681
AciI	CCGC	4 cut(s)	52, 439, 760, 872
AclI	AACGTT	1 cut(s)	779
AclWI	GGATC	3 cut(s)	313, 854, 867
AcoI	YGGCCR	2 cut(s)	12, 611
AcsI	RAATTY	5 cut(s)	128, 301, 336, 949, 1024
AcuI	CTGAAG	1 cut(s)	659
AfaI	GTAC	2 cut(s)	479, 588
AfiI	CCNNNNNNNGG	1 cut(s)	382
AflIII	ACRYGT	1 cut(s)	865
AgsI	TTSAA	4 cut(s)	160, 235, 500, 919
AluBI	AGCT	3 cut(s)	84, 187, 718
AluI	AGCT	3 cut(s)	84, 187, 718
Alw26I	GTCTC	2 cut(s)	542, 572
AlwI	GGATC	3 cut(s)	313, 854, 867
AoxI	GGCC	5 cut(s)	12, 97, 384, 611, 977
ApeKI	GCWGC	1 cut(s)	84
ApoI	RAATTY	5 cut(s)	128, 301, 336, 949, 1024
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
Asp700I	GAANNNNTTC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	978
AsuHPI	GGTGA	2 cut(s)	538, 930
AsuII	TTCGAA	1 cut(s)	340
BalI	TGGCCA	1 cut(s)	613
BamHI	GGATCC	1 cut(s)	859
BauI	CACGAG	1 cut(s)	380
BbvCI	CCTCAGC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	2 cut(s)	427, 603
BceAI	ACGGC	2 cut(s)	27, 84
BcgI	CGANNNNNNTGC	2 cut(s)	430, 464
BcoDI	GTCTC	2 cut(s)	542, 572
BfaI	CTAG	2 cut(s)	398, 672
BfmI	CTRYAG	1 cut(s)	272
BglII	AGATCT	1 cut(s)	559
BisI	GCNGC	2 cut(s)	85, 873
BlsI	GCNGC	2 cut(s)	86, 874
BmgT120I	GGNCC	1 cut(s)	978
BmiI	GGNNCC	1 cut(s)	861
BmrI	ACTGGG	1 cut(s)	561
BmuI	ACTGGG	1 cut(s)	561
BoxI	GACNNNNGTC	1 cut(s)	760
Bpu10I	CCTNAGC	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	340
BpuEI	CTTGAG	2 cut(s)	54, 980
BsaJI	CCNNGG	3 cut(s)	15, 323, 453
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse1I	ACTGG	3 cut(s)	387, 556, 594
BseDI	CCNNGG	3 cut(s)	15, 323, 453
BseGI	GGATG	5 cut(s)	419, 426, 511, 813, 1002
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	193
BseNI	ACTGG	3 cut(s)	387, 556, 594
BseRI	GAGGAG	1 cut(s)	32
BseX3I	CGGCCG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	71
Bsh1285I	CGRYCG	2 cut(s)	15, 334
BshFI	GGCC	5 cut(s)	14, 99, 386, 613, 979
BsiEI	CGRYCG	2 cut(s)	15, 334
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	2 cut(s)	542, 572
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	5 cut(s)	14, 99, 386, 613, 979
Bsp119I	TTCGAA	1 cut(s)	340
Bsp143I	GATC	6 cut(s)	151, 318, 331, 559, 574, 859
BspACI	CCGC	4 cut(s)	52, 439, 760, 872
BspANI	GGCC	5 cut(s)	14, 99, 386, 613, 979
BspCNI	CTCAG	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	861
BspMAI	CTGCAG	1 cut(s)	276
BspPI	GGATC	3 cut(s)	313, 854, 867
BspQI	GCTCTTC	1 cut(s)	708
BspT104I	TTCGAA	1 cut(s)	340
BsrI	ACTGG	3 cut(s)	387, 556, 594
BssECI	CCNNGG	3 cut(s)	15, 323, 453
BssMI	GATC	6 cut(s)	151, 318, 331, 559, 574, 859
BssSI	CACGAG	1 cut(s)	380
BssT1I	CCWWGG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	485
Bst6I	CTCTTC	2 cut(s)	694, 708
BstBI	TTCGAA	1 cut(s)	340
BstC8I	GCNNGC	2 cut(s)	185, 272
BstDEI	CTNAG	3 cut(s)	179, 188, 974
BstDSI	CCRYGG	1 cut(s)	323
BstEII	GGTNACC	2 cut(s)	140, 936
BstENI	CCTNNNNNAGG	1 cut(s)	380
BstF5I	GGATG	5 cut(s)	419, 426, 511, 813, 1002
BstKTI	GATC	6 cut(s)	154, 321, 334, 562, 577, 862
BstMAI	GTCTC	2 cut(s)	542, 572
BstMBI	GATC	6 cut(s)	151, 318, 331, 559, 574, 859
BstMCI	CGRYCG	2 cut(s)	15, 334
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 81, 216, 414
BstNSI	RCATGY	1 cut(s)	869
BstPAI	GACNNNNGTC	1 cut(s)	760
BstPI	GGTNACC	2 cut(s)	140, 936
BstSFI	CTRYAG	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	71
BstX2I	RGATCY	2 cut(s)	559, 859
BstYI	RGATCY	2 cut(s)	559, 859
BstZI	CGGCCG	1 cut(s)	12
BsuRI	GGCC	5 cut(s)	14, 99, 386, 613, 979
BtgI	CCRYGG	1 cut(s)	323
BtsCI	GGATG	5 cut(s)	419, 426, 511, 813, 1002
Cac8I	GCNNGC	2 cut(s)	185, 272
Cfr13I	GGNCC	1 cut(s)	978
Csp6I	GTAC	2 cut(s)	478, 587
CviAII	CATG	5 cut(s)	110, 211, 256, 866, 1035
CviQI	GTAC	2 cut(s)	478, 587
DdeI	CTNAG	3 cut(s)	179, 188, 974
DpnI	GATC	6 cut(s)	153, 320, 333, 561, 576, 861
DpnII	GATC	6 cut(s)	151, 318, 331, 559, 574, 859
DraI	TTTAAA	1 cut(s)	667
EaeI	YGGCCR	2 cut(s)	12, 611
EagI	CGGCCG	1 cut(s)	12
Eam1104I	CTCTTC	2 cut(s)	694, 708
EarI	CTCTTC	2 cut(s)	694, 708
EclXI	CGGCCG	1 cut(s)	12
Eco130I	CCWWGG	1 cut(s)	453
Eco52I	CGGCCG	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	659
Eco91I	GGTNACC	2 cut(s)	140, 936
EcoNI	CCTNNNNNAGG	1 cut(s)	380
EcoO65I	GGTNACC	2 cut(s)	140, 936
EcoRI	GAATTC	2 cut(s)	301, 336
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	5 cut(s)	113, 214, 259, 869, 1038
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	5 cut(s)	109, 210, 255, 865, 1034
FauNDI	CATATG	2 cut(s)	165, 772
Fnu4HI	GCNGC	2 cut(s)	85, 873
FokI	GGATG	5 cut(s)	406, 413, 518, 800, 989
Fsp4HI	GCNGC	2 cut(s)	85, 873
FspBI	CTAG	2 cut(s)	398, 672
GluI	GCNGC	2 cut(s)	85, 873
HaeIII	GGCC	5 cut(s)	14, 99, 386, 613, 979
Hin1II	CATG	5 cut(s)	113, 214, 259, 869, 1038
HincII	GTYRAC	1 cut(s)	404
HindII	GTYRAC	1 cut(s)	404
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	3 cut(s)	535, 686, 806
HphI	GGTGA	2 cut(s)	538, 930
Hpy166II	GTNNAC	1 cut(s)	404
Hpy188I	TCNGA	6 cut(s)	105, 229, 574, 639, 649, 755
Hpy188III	TCNNGA	2 cut(s)	380, 541
Hpy8I	GTNNAC	1 cut(s)	404
Hpy99I	CGWCG	2 cut(s)	452, 485
HpyAV	CCTTC	6 cut(s)	208, 386, 494, 517, 850, 1001
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4IV	ACGT	2 cut(s)	279, 779
HpyCH4V	TGCA	4 cut(s)	122, 274, 492, 1022
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 81, 216, 414
HpyF3I	CTNAG	3 cut(s)	179, 188, 974
HpySE526I	ACGT	2 cut(s)	279, 779
Hsp92II	CATG	5 cut(s)	113, 214, 259, 869, 1038
Kzo9I	GATC	6 cut(s)	151, 318, 331, 559, 574, 859
LguI	GCTCTTC	1 cut(s)	708
LmnI	GCTCC	2 cut(s)	81, 230
LpnPI	CCDG	6 cut(s)	260, 284, 400, 537, 575, 588
Lsp1109I	GCAGC	1 cut(s)	71
MaeI	CTAG	2 cut(s)	398, 672
MaeII	ACGT	2 cut(s)	279, 779
MaeIII	GTNAC	2 cut(s)	140, 936
MalI	GATC	6 cut(s)	153, 320, 333, 561, 576, 861
MboI	GATC	6 cut(s)	151, 318, 331, 559, 574, 859
MboII	GAAGA	5 cut(s)	161, 194, 197, 681, 725
MflI	RGATCY	2 cut(s)	559, 859
MlsI	TGGCCA	1 cut(s)	613
MluNI	TGGCCA	1 cut(s)	613
MlyI	GAGTC	2 cut(s)	544, 680
MmeI	TCCRAC	2 cut(s)	447, 834
Mox20I	TGGCCA	1 cut(s)	613
MroXI	GAANNNNTTC	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	613
MseI	TTAA	3 cut(s)	666, 720, 843
MslI	CAYNNNNRTG	1 cut(s)	1033
Msp20I	TGGCCA	1 cut(s)	613
MspA1I	CMGCKG	1 cut(s)	760
MwoI	GCNNNNNNNGC	4 cut(s)	72, 81, 216, 414
NdeI	CATATG	2 cut(s)	165, 772
NdeII	GATC	6 cut(s)	151, 318, 331, 559, 574, 859
NlaIII	CATG	5 cut(s)	113, 214, 259, 869, 1038
NlaIV	GGNNCC	1 cut(s)	861
NmeAIII	GCCGAG	2 cut(s)	28, 40
NmuCI	GTSAC	1 cut(s)	936
NspI	RCATGY	1 cut(s)	869
NspV	TTCGAA	1 cut(s)	340
PciI	ACATGT	1 cut(s)	865
PciSI	GCTCTTC	1 cut(s)	708
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	1 cut(s)	806
PkrI	GCNGC	2 cut(s)	86, 874
Ple19I	CGATCG	1 cut(s)	334
PleI	GAGTC	2 cut(s)	543, 680
PpsI	GAGTC	2 cut(s)	543, 680
PscI	ACATGT	1 cut(s)	865
PshAI	GACNNNNGTC	1 cut(s)	760
PsiI	TTATAA	1 cut(s)	681
Psp1406I	AACGTT	1 cut(s)	779
PspEI	GGTNACC	2 cut(s)	140, 936
PspN4I	GGNNCC	1 cut(s)	861
PspPI	GGNCC	1 cut(s)	978
PstI	CTGCAG	1 cut(s)	276
PsuI	RGATCY	2 cut(s)	559, 859
PvuI	CGATCG	1 cut(s)	334
RsaI	GTAC	2 cut(s)	479, 588
RsaNI	GTAC	2 cut(s)	478, 587
RseI	CAYNNNNRTG	1 cut(s)	1033
SapI	GCTCTTC	1 cut(s)	708
SaqAI	TTAA	3 cut(s)	666, 720, 843
SatI	GCNGC	2 cut(s)	85, 873
Sau3AI	GATC	6 cut(s)	151, 318, 331, 559, 574, 859
Sau96I	GGNCC	1 cut(s)	978
SbfI	CCTGCAGG	1 cut(s)	276
SchI	GAGTC	2 cut(s)	544, 680
SdaI	CCTGCAGG	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	1033
SmlI	CTYRAG	2 cut(s)	69, 959
SmoI	CTYRAG	2 cut(s)	69, 959
Sse8387I	CCTGCAGG	1 cut(s)	276
SsiI	CCGC	4 cut(s)	52, 439, 760, 872
SspI	AATATT	1 cut(s)	840
SspMI	CTAG	2 cut(s)	398, 672
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	485
TaiI	ACGT	2 cut(s)	282, 782
TaqI	TCGA	3 cut(s)	334, 340, 607
TatI	WGTACW	1 cut(s)	586
TauI	GCSGC	1 cut(s)	875
TfiI	GAWTC	1 cut(s)	806
Tru1I	TTAA	3 cut(s)	666, 720, 843
Tru9I	TTAA	3 cut(s)	666, 720, 843
TseFI	GTSAC	1 cut(s)	936
TseI	GCWGC	1 cut(s)	84
Tsp45I	GTSAC	1 cut(s)	936
TspDTI	ATGAA	5 cut(s)	227, 738, 789, 869, 1017
TspGWI	ACGGA	1 cut(s)	894
XagI	CCTNNNNNAGG	1 cut(s)	380
XapI	RAATTY	5 cut(s)	128, 301, 336, 949, 1024
XceI	RCATGY	1 cut(s)	869
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	2 cut(s)	398, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.