Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040262.1

Orthogroup ID

OG0003787

Physical Location & Seq

Genomic Coordinates Reverse (-)

828 .. 1405

Gene Structure 578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040262.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgctcaaagtaagggaagagcttaatgaaattagagaaaatgctgatgatataatcagacagcggtcaaggacatatgaaacgttttgtggtggtgcttatgtagaggattccaacatcccaaatgctttcgtctgcccaatatttaaggaagtaatgaaggatccacatgtggcggctgacggattttcttatgagcgaaaagccatagcgaaatggttgaaattgggaagttataggtcaccaatgacaaatttggtgcttgagcataaagttcttaggcccaatcacacccttctgtttctcatccaagattggcaaagtgcaaattcatctccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr U-box

Protein Analysis

113

Amino Acids

13.07

Weight (kDa)

6.83

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01670 AT1G01670 AT1G01670 AT1G01680
fragaria_vesca	FvH4_1g19560 FvH4_1g19563
malus_domestica	MD07G1249800.v1.1
pyrus_communis	pycom01g09160
rosa_chinensis	RchiOBHm_Chr2g0111071 RchiOBHm_Chr2g0111091 RchiOBHm_Chr2g0111101
rosa_laevigata	RLG00000017863 RLG00000017864
rosa_multiflora	Rmu_co8348129.1_g000001 Rmu_sc0012949.1_g000001 Rmu_sc0018570.1_g000001 Rmu_sc0019445.1_g000002 Rmu_sc0036074.1_g000001 Rmu_sc0040262.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132710
rosa_rugosa	Rorug02G0170900
rosa_samantha	Rh2AG223400 Rh2AG223600 Rh2AG223700 Rh2AG223800 Rh2BG235300 Rh2BG235400 Rh2CG226800 Rh2CG226900 Rh2DG231100 Rh2DG231300 Rh2DG231400
rosa_wichuraiana	Rw2G017240 Rw2G017260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	64, 176
AclI	AACGTT	1 cut(s)	83
AclWI	GGATC	2 cut(s)	158, 171
AcsI	RAATTY	2 cut(s)	253, 328
AflIII	ACRYGT	1 cut(s)	169
AgsI	TTSAA	1 cut(s)	223
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
AlwI	GGATC	2 cut(s)	158, 171
AoxI	GGCC	1 cut(s)	281
ApoI	RAATTY	2 cut(s)	253, 328
AspS9I	GGNCC	1 cut(s)	282
AsuHPI	GGTGA	1 cut(s)	234
BamHI	GGATCC	1 cut(s)	163
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	282
BmiI	GGNNCC	1 cut(s)	165
BoxI	GACNNNNGTC	1 cut(s)	64
BpuEI	CTTGAG	1 cut(s)	284
BseGI	GGATG	2 cut(s)	117, 306
BshFI	GGCC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	283
Bsp143I	GATC	1 cut(s)	163
BspACI	CCGC	2 cut(s)	64, 176
BspANI	GGCC	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	165
BspPI	GGATC	2 cut(s)	158, 171
BspQI	GCTCTTC	1 cut(s)	12
BssMI	GATC	1 cut(s)	163
Bst6I	CTCTTC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	278
BstEII	GGTNACC	1 cut(s)	240
BstF5I	GGATG	2 cut(s)	117, 306
BstKTI	GATC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	173
BstPAI	GACNNNNGTC	1 cut(s)	64
BstPI	GGTNACC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	283
BtsCI	GGATG	2 cut(s)	117, 306
Cfr13I	GGNCC	1 cut(s)	282
CviAII	CATG	2 cut(s)	170, 339
CviJI	RGCY	4 cut(s)	22, 179, 206, 283
CviKI_1	RGCY	4 cut(s)	22, 179, 206, 283
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco91I	GGTNACC	1 cut(s)	240
EcoO65I	GGTNACC	1 cut(s)	240
FaeI	CATG	2 cut(s)	173, 342
FatI	CATG	2 cut(s)	169, 338
FauNDI	CATATG	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	2 cut(s)	104, 293
Fsp4HI	GCNGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	177
HaeIII	GGCC	1 cut(s)	283
Hin1II	CATG	2 cut(s)	173, 342
HinfI	GANTC	1 cut(s)	110
HphI	GGTGA	1 cut(s)	234
Hpy188I	TCNGA	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	154, 305
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	1 cut(s)	326
HpyF3I	CTNAG	1 cut(s)	278
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	2 cut(s)	173, 342
Kzo9I	GATC	1 cut(s)	163
LguI	GCTCTTC	1 cut(s)	12
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	240
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	1 cut(s)	29
MflI	RGATCY	1 cut(s)	163
MluCI	AATT	4 cut(s)	30, 224, 253, 328
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	1 cut(s)	100
MseI	TTAA	2 cut(s)	24, 147
MslI	CAYNNNNRTG	1 cut(s)	337
MspA1I	CMGCKG	1 cut(s)	64
NdeI	CATATG	1 cut(s)	76
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	2 cut(s)	173, 342
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	1 cut(s)	240
NspI	RCATGY	1 cut(s)	173
PciI	ACATGT	1 cut(s)	169
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	110
PkrI	GCNGC	1 cut(s)	178
PscI	ACATGT	1 cut(s)	169
PshAI	GACNNNNGTC	1 cut(s)	64
Psp1406I	AACGTT	1 cut(s)	83
PspEI	GGTNACC	1 cut(s)	240
PspN4I	GGNNCC	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	282
PsuI	RGATCY	1 cut(s)	163
RseI	CAYNNNNRTG	1 cut(s)	337
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	24, 147
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	1 cut(s)	282
SetI	ASST	3 cut(s)	24, 86, 242
SgeI	CNNG	4 cut(s)	81, 182, 275, 323
SmiMI	CAYNNNNRTG	1 cut(s)	337
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	4 cut(s)	30, 224, 253, 328
SsiI	CCGC	2 cut(s)	64, 176
SspI	AATATT	1 cut(s)	144
TaiI	ACGT	1 cut(s)	86
TasI	AATT	4 cut(s)	30, 224, 253, 328
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	2 cut(s)	24, 147
Tru9I	TTAA	2 cut(s)	24, 147
TseFI	GTSAC	1 cut(s)	240
Tsp45I	GTSAC	1 cut(s)	240
TspDTI	ATGAA	4 cut(s)	42, 93, 173, 321
TspGWI	ACGGA	1 cut(s)	198
XapI	RAATTY	2 cut(s)	253, 328
XceI	RCATGY	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.