pycom01g09160

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0003787
Physical Location & Seq
Forward (+)
10152610 .. 10153068
459 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g09160.1

Sequence Viewer

Length: 276 bp
ATGAGAACTTCATGTGGTTGCTCATCATCATTCCGGTTGGGTACTGAAGAGCATTTCCAACCTCCTCCATATTTTATTTGTCCCATTTTCCAGGAAGTCATGCAAGATCCGCATGTTGCAGCAGACGGTTATACTTATGAAGCAGAAGCTTTGAAAGGATGGTTGGACAGCGGTCACGACACTTCACCGATGACAAATCTGAAGCTTGAACACAAGAATCTCGTCCCCAACCGCGCTCTCCGTTCTGCAATTCAGGAGTGGCTGCAACAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr U-box

Protein Analysis

92

Amino Acids

10.37

Weight (kDa)

5.41

Isoelectric Point (pI)

47.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 22 - 90 4.5e-21 U-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 234
AciI CCGC 3 cut(s) 110, 171, 232
AclWI GGATC 1 cut(s) 101
AcuI CTGAAG 2 cut(s) 66, 221
AfaI GTAC 1 cut(s) 43
AgsI TTSAA 2 cut(s) 154, 209
AjnI CCWGG 1 cut(s) 90
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AluBI AGCT 3 cut(s) 149, 205, 271
AluI AGCT 3 cut(s) 149, 205, 271
AlwI GGATC 1 cut(s) 101
ApeKI GCWGC 2 cut(s) 119, 262
AspLEI GCGC 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 177
BbvI GCAGC 2 cut(s) 131, 249
BccI CCATC 1 cut(s) 153
BciT130I CCWGG 1 cut(s) 92
BisI GCNGC 2 cut(s) 120, 263
BlsI GCNGC 2 cut(s) 121, 264
Bme1390I CCNGG 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 92
BoxI GACNNNNGTC 1 cut(s) 171
BsaWI WCCGGW 1 cut(s) 33
BseBI CCWGG 1 cut(s) 92
BseGI GGATG 1 cut(s) 164
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 2 cut(s) 131, 249
Bsh1236I CGCG 1 cut(s) 234
BsiSI CCGG 1 cut(s) 34
BslFI GGGAC 2 cut(s) 66, 209
BsmFI GGGAC 2 cut(s) 66, 209
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 3 cut(s) 110, 171, 232
BspFNI CGCG 1 cut(s) 234
BspPI GGATC 1 cut(s) 101
BspQI GCTCTTC 1 cut(s) 42
BssMI GATC 1 cut(s) 106
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 42
BstF5I GGATG 1 cut(s) 164
BstFNI CGCG 1 cut(s) 234
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 2 cut(s) 109, 268
BstNI CCWGG 1 cut(s) 92
BstNSI RCATGY 1 cut(s) 116
BstPAI GACNNNNGTC 1 cut(s) 171
BstSCI CCNGG 1 cut(s) 90
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 131, 249
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BtsCI GGATG 1 cut(s) 164
CfoI GCGC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 42
CviAII CATG 3 cut(s) 12, 100, 113
CviJI RGCY 4 cut(s) 149, 205, 262, 271
CviKI_1 RGCY 4 cut(s) 149, 205, 262, 271
CviQI GTAC 1 cut(s) 42
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco57I CTGAAG 2 cut(s) 66, 221
EcoRII CCWGG 1 cut(s) 90
FaeI CATG 3 cut(s) 15, 103, 116
FaiI YATR 6 cut(s) 13, 70, 101, 114, 132, 138
FaqI GGGAC 2 cut(s) 66, 209
FatI CATG 3 cut(s) 11, 99, 112
Fnu4HI GCNGC 2 cut(s) 120, 263
FokI GGATG 1 cut(s) 171
Fsp4HI GCNGC 2 cut(s) 120, 263
GlaI GCGC 1 cut(s) 235
GluI GCNGC 2 cut(s) 120, 263
HapII CCGG 1 cut(s) 34
HhaI GCGC 1 cut(s) 236
Hin1II CATG 3 cut(s) 15, 103, 116
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HindIII AAGCTT 2 cut(s) 147, 203
HinfI GANTC 1 cut(s) 217
HpaII CCGG 1 cut(s) 34
HphI GGTGA 1 cut(s) 177
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 2 cut(s) 176, 254
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 4 cut(s) 103, 119, 248, 265
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 268
Hsp92II CATG 3 cut(s) 15, 103, 116
HspAI GCGC 1 cut(s) 234
Kzo9I GATC 1 cut(s) 106
LguI GCTCTTC 1 cut(s) 42
LpnPI CCDG 4 cut(s) 47, 77, 104, 239
Lsp1109I GCAGC 2 cut(s) 131, 249
MaeIII GTNAC 1 cut(s) 173
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 1 cut(s) 59
MflI RGATCY 1 cut(s) 106
MluCI AATT 1 cut(s) 249
MmeI TCCRAC 2 cut(s) 82, 144
MnlI CCTC 2 cut(s) 72, 75
MspA1I CMGCKG 1 cut(s) 171
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 109, 268
NdeII GATC 1 cut(s) 106
NlaIII CATG 3 cut(s) 15, 103, 116
NmuCI GTSAC 1 cut(s) 173
NspI RCATGY 1 cut(s) 116
PciSI GCTCTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 217
PfoI TCCNGGA 1 cut(s) 90
PkrI GCNGC 2 cut(s) 121, 264
PshAI GACNNNNGTC 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 42
SatI GCNGC 2 cut(s) 120, 263
Sau3AI GATC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 92
SetI ASST 4 cut(s) 64, 151, 207, 273
Sse9I AATT 1 cut(s) 249
SsiI CCGC 3 cut(s) 110, 171, 232
StyD4I CCNGG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 128
TasI AATT 1 cut(s) 249
TfiI GAWTC 1 cut(s) 217
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 2 cut(s) 119, 262
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 153
TspGWI ACGGA 1 cut(s) 230
XceI RCATGY 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.